Fcho1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression Fcho1 0.16 0.1 2.1e-03 0.04 0.04 0.03 0.04 6.1e-04 2.7e-04 9.6e-04 5.5e-04
2 Liver gene expression Fcho1 0.04 0.03 1.9e-03 0.01 0 0.01 0.01 2.1e-02 9.9e-02 2.0e-02 4.2e-02
3 Brain gene expression Fcho1 0.16 0.15 5.8e-05 0.06 0.04 0.05 0.06 1.4e-06 1.0e-04 2.5e-05 2.0e-06
4 Adipose gene expression Fcho1 0.07 0.05 3.6e-06 0.04 0.04 0.04 0.04 4.5e-05 6.6e-05 8.5e-05 5.6e-05
5 PL gene expression Fcho1 0.03 0.02 1.7e-03 0.02 0.03 0.02 0.03 3.5e-03 7.3e-04 1.4e-03 7.4e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4 5
Bone: apparent density2.13.76.22.32.51.70.71.8
Area under the delay curve0.91.11.6-1.1-1.3-1.1-0.5-1.1
BMI with tail2.48.313.23.63.03.12.42.0
BMI without tail2.57.512.53.52.62.83.01.2
Body weight6.126.939.06.25.65.44.63.6
Weight adjusted by age1.52.33.92.01.51.21.80.7
Bone surface1.73.14.91.82.21.70.52.0
Bone volume2.34.16.02.42.42.01.11.9
Breakpoint value in progressive ratio session0.60.82.1-0.31.00.8-0.11.5
Number of licking bursts0.10.20.3-0.5-0.5-0.3-0.3-0.4
Context. condit. distance diff. score0.10.10.10.20.30.30.30.2
Locomotion velocity, session 13.13.36.61.21.92.1-0.42.6
Locomotion distance, session 11.51.84.00.61.11.1-1.52.0
Locomotion velocity, session 21.92.23.11.81.71.70.71.2
Locomotion distance, session 21.31.84.30.70.90.6-2.11.7
Locomotion velocity, session 30.10.20.50.10.30.1-0.70.5
Locomotion distance, session 30.40.50.90.40.70.6-0.71.0
Stereotopy head waving bouts, day 30.20.20.50.10.50.2-0.70.5
Stereotopy head waving duration, day 30.10.10.20.10.40.2-0.20.4
Locomotion velocity, session 70.70.71.3-0.9-1.1-0.6-1.0-0.4
Locomotion distance, session 71.51.92.6-1.6-1.6-1.4-1.2-1.0
Stereotopy head waving bouts, day 72.42.74.11.72.01.80.11.8
Stereotopy head waving duration, day 72.22.64.01.72.01.80.61.6
Locomotion velocity, session 81.11.32.40.80.91.1-1.11.5
Locomotion distance, session 81.21.83.11.11.31.3-0.91.8
Degree of sensitization distance1.92.03.0-1.5-1.7-1.4-0.4-1.5
Degree of sensitization stereotypy2.83.14.21.92.02.00.51.8
Conditioned locomotion0.20.20.3-0.6-0.5-0.40.2-0.4
Cocaine response after cond. corrected2.73.35.0-1.7-1.9-2.20.6-2.2
Cocaine response after cond. not corrected2.22.63.9-1.7-1.7-2.0-0.1-1.8
Cocaine response before conditioning0.81.02.20.30.60.7-1.51.3
Saline control response1.31.72.21.41.51.3-0.51.5
Bone: connectivity density1.11.72.91.21.71.20.61.5
Bone: cortical apparent density0.10.20.7-0.1-0.1-0.3-0.9-0.0
Bone: cortical area7.110.816.74.13.43.63.02.0
Bone: cortical porosity0.60.71.50.70.61.1-0.31.2
Bone: cortical porosity0.80.91.80.80.81.2-0.21.4
Bone: cortical thickness7.212.018.54.33.83.92.52.5
Bone: cortical thickness3.84.46.72.62.32.31.81.4
Bone: cortical tissue density0.20.20.9-0.3-0.2-0.4-0.9-0.1
Condit. Reinf. active minus inactive responses2.12.43.21.71.71.80.51.6
Condit. Reinf. active-inactive response ratio0.40.40.60.80.70.70.40.5
Condit. Reinf. active responses2.73.34.41.92.02.10.81.9
Condit. Reinf. inactive responses0.50.60.90.80.71.00.70.8
Incentive salience index mean5.46.79.02.73.02.90.52.9
Condit. Reinf. lever presses8.311.615.93.54.03.90.43.9
Condit. Reinf. active minus inactive responses0.40.50.80.60.80.8-0.50.9
Condit. Reinf. active-inactive response ratio0.60.71.01.00.90.90.60.6
Condit. Reinf. active responses0.30.41.9-0.10.00.1-1.40.5
Condit. Reinf. inactive responses1.92.43.4-1.8-1.6-1.5-1.9-0.8
Condit. Reinf. lever presses0.00.00.00.10.10.10.0-0.1
Condit. Reinf. lever reinforcers received0.10.10.6-0.1-0.2-0.1-0.8-0.0
Conditioned reinforcement - actives0.50.82.80.90.30.31.7-0.5
Conditioned reinforcement - inactives2.43.612.01.81.11.13.5-0.3
Conditioned locomotion0.81.03.20.5-0.3-0.31.8-1.2
Patch foraging indifference point 0 sec1.42.55.21.41.61.52.31.0
Patch foraging indifference point AUC0.30.40.8-0.9-0.5-0.8-0.5-0.4
Delay disc. indifference point, 0s delay1.71.84.1-1.2-1.3-1.2-2.0-0.8
Delay disc. indifference point, 16s delay4.34.76.5-2.3-2.5-2.3-1.0-2.3
Delay disc. indifference point, 2s delay0.40.41.5-0.6-0.20.0-1.20.5
Delay disc. indifference point, 24s delay0.50.51.3-0.3-0.8-0.70.1-1.1
Delay disc. indifference point, 4s delay0.40.40.50.70.60.6-0.60.6
Delay disc. indifference point, 8s delay1.61.92.7-1.5-1.5-1.50.3-1.6
Indifference point function ln k0.61.02.21.20.51.01.5-0.0
Indifference point function log k0.61.02.21.20.51.01.5-0.0
Patch foraging total patch changes 0 sec1.93.58.01.81.71.72.80.8
Patch foraging total patch changes 12 sec0.20.20.80.50.40.10.9-0.1
Patch foraging total patch changes 18 sec0.30.41.3-1.1-0.5-0.6-0.0-0.2
Patch foraging total patch changes 24 sec0.20.40.90.20.60.40.90.5
Patch foraging total patch changes 6 sec0.91.32.11.01.31.11.50.7
Patch foraging time to switch 0 sec0.40.93.9-0.5-0.2-0.3-2.00.3
Patch foraging water rate 0 sec1.02.03.51.91.31.51.50.8
Patch foraging water rate 12 sec0.51.01.91.40.71.01.20.2
Patch foraging water rate 18 sec0.30.51.00.60.60.8-0.11.0
Patch foraging water rate 24 sec2.43.36.22.51.82.00.51.7
Patch foraging water rate 6 sec0.81.13.81.20.20.62.0-0.3
Seeking ratio, delayed vs. immediate footshock0.50.61.91.40.10.2-1.1-0.2
Distance traveled before self-admin0.71.01.31.11.10.90.90.9
Distance traveled after self-admin2.02.53.31.81.81.61.11.5
Extensor digitorum longus weight0.93.56.22.52.21.91.01.3
Bone: elastic displacement0.80.91.40.90.81.0-0.81.2
Bone: elastic work2.02.64.92.21.51.81.31.0
Bone: endosteal estimation0.61.42.0-1.1-1.4-1.20.5-1.4
Bone: endosteal perimeter0.30.73.10.2-0.20.21.8-0.6
Epididymis fat weight0.82.94.82.21.72.01.01.3
Delta time in closed arm before/after self-admin1.11.11.8-1.3-1.2-1.00.1-1.1
Delta time in open arm before/after self-admin0.30.31.2-0.4-0.0-0.3-1.10.3
Diff in mean of infusions in LGA sessions0.20.30.70.30.50.60.90.3
Delay discount exponential model param0.50.60.80.80.90.80.20.9
Extinction: sum of active levers before priming1.21.32.50.31.10.8-1.51.6
Active lever presses in extinction session 60.10.10.4-0.0-0.2-0.2-0.6-0.1
Bone: final force4.97.912.83.42.62.83.61.0
Bone: final moment4.06.412.62.92.12.43.60.6
Food consumed during 24 hour testing period1.11.52.70.81.31.2-0.91.6
Glucose0.71.11.60.91.01.31.30.6
Heart weight3.65.57.42.62.72.51.82.0
Delay discount hyperbolic model param0.20.20.30.60.60.50.20.5
Intermittent access intake day 1-15 change0.30.50.70.70.80.80.50.7
Intermittent access intake escalation0.20.40.50.60.70.70.20.7
Intermittent access intake escalation 20.40.40.90.90.70.70.50.3
Intermitt. access day 1 inactive lever presses0.10.30.70.70.40.40.9-0.1
Intermitt. access day 15 inactive lever presses0.10.10.60.2-0.1-0.10.8-0.2
Intermitt. access escalation Index0.50.71.0-0.6-1.0-1.0-0.7-0.8
Intermittent access day 1 total infusions1.01.72.9-1.0-1.2-1.01.7-1.5
Intermittent access day 15 total infusions0.20.31.0-0.2-0.2-0.21.0-0.5
Intermittent access terminal intake (last 3 days)0.50.61.2-0.8-0.6-0.61.1-0.7
Intermittent access total infusions0.91.02.8-0.7-0.6-0.61.7-1.1
Intermittent access day 1 locomotion0.81.04.0-0.4-0.3-0.22.0-0.9
Intermittent access day 15 total locomotion0.20.30.9-0.7-0.1-0.20.9-0.2
Intermittent access total locomotion0.70.83.7-0.4-0.00.01.9-0.5
Intermittent access standard deviation0.10.20.50.4-0.0-0.10.7-0.5
Left kidney weight1.04.56.12.42.52.41.21.9
Right kidney weight1.67.39.83.13.13.11.92.2
Cocaine induced anxiety0.40.62.10.30.60.51.40.2
Post-drug Anxiety0.00.00.10.30.20.10.2-0.0
Baseline Anxiety1.01.14.6-0.2-0.7-0.6-2.1-0.2
Tail length0.83.35.22.31.92.01.41.1
Length with tail2.29.713.13.43.63.42.52.5
Length without tail2.27.110.22.83.22.82.22.3
Times rat made contact with spout0.10.10.4-0.30.0-0.0-0.60.2
Lifetime Intake1.01.25.0-0.0-0.2-0.22.2-0.9
Liver weight, left1.11.82.51.11.21.3-1.41.6
Liver weight, right1.32.33.71.91.71.70.91.0
Locomotor activity3.75.87.92.42.62.8-0.92.8
Locomotor testing distance1.22.12.61.51.51.6-1.11.6
Locomotor testing rearing1.02.04.20.51.41.4-1.22.0
Locomotion in novel chamber0.60.81.20.91.10.9-0.21.0
Locomotion in novel chamber post-restriction1.72.75.41.11.91.80.02.3
Fecal boli incidents, locomotor time 10.71.11.6-0.9-1.3-1.1-0.5-1.1
Change in fecal boli incidents, locomotor task0.50.50.9-1.0-0.8-0.8-0.3-0.4
Time >=10cm from walls, locomotor time 10.60.71.0-1.0-1.0-0.90.3-0.8
Bouts of movement, locomotor time 10.30.31.0-0.5-0.0-0.2-1.00.3
Total resting periods, locomotor time 10.50.61.7-0.8-0.4-0.6-1.30.2
Rest time, locomotor task time 10.50.61.2-0.2-0.9-0.90.0-1.1
Distance moved, locomotor task time 10.10.10.4-0.7-0.2-0.1-0.1-0.0
Vertical activity count, locomotor time 10.41.01.40.91.11.2-0.61.2
Time >=10cm from walls, locomotor time 20.61.01.7-0.4-1.3-1.0-0.4-1.3
Bouts of movement, locomotor time 20.40.61.60.21.00.7-0.41.2
Total resting periods, locomotor time 20.30.41.20.00.90.5-0.21.1
Rest time, locomotor task time 20.10.10.20.30.50.40.10.2
Distance moved, locomotor task time 20.60.81.3-0.6-1.1-0.90.2-1.2
Vertical activity count, locomotor time 20.20.21.01.00.10.4-0.00.0
Light reinforcement 10.41.01.8-1.3-1.1-0.90.0-1.0
Light reinforcement 22.64.05.8-2.3-2.1-2.10.4-2.4
Bone: marrow area0.61.31.9-1.1-1.4-1.20.4-1.3
Bone: maximum diameter1.83.46.32.11.51.82.50.6
Bone: maximum force6.711.818.14.33.53.73.42.1
Bone: maximum moment5.08.813.43.72.93.13.21.5
Mean time between licks in bursts0.92.33.71.91.31.71.70.5
Mean num. licks in bursts0.10.20.40.50.60.40.10.6
Cd content in liver0.50.62.00.5-0.1-0.01.4-0.8
Co content in liver0.00.00.10.00.30.2-0.00.3
Cu content in liver1.31.53.80.31.01.1-1.31.9
Fe content in liver1.01.22.0-1.0-0.9-1.3-1.4-0.6
K content in liver2.22.13.0-1.6-1.7-1.6-1.3-1.0
Mg content in liver0.10.10.2-0.5-0.5-0.3-0.0-0.2
Mn content in liver0.20.20.60.30.30.80.40.5
Na content in liver0.91.04.3-0.4-0.2-0.2-2.10.6
Rb content in liver1.21.43.6-0.2-0.6-0.81.9-1.5
Se content in liver0.30.30.80.30.50.4-0.50.9
Sr content in liver0.50.40.6-0.8-0.7-0.7-0.8-0.4
Zn content in liver0.10.10.3-0.10.10.2-0.40.5
Bone: minimum diameter1.42.64.12.01.61.81.70.7
Time in familiar zone, hab. session 10.00.00.00.00.20.10.20.2
Time in novel zone, hab. session 10.00.00.00.1-0.10.10.1-0.1
Total zone transitions, hab. session 10.30.41.00.20.20.3-1.00.9
Total locomotion distance, hab. session 10.81.23.40.00.30.5-1.81.5
Locomotion velocity, hab. session 10.71.03.1-0.10.20.4-1.81.3
Time in familiar zone, hab. session 20.00.00.2-0.00.10.00.4-0.1
Time in novel zone, hab. session 20.20.20.3-0.3-0.6-0.5-0.3-0.5
Total zone transitions, hab. session 20.00.00.1-0.1-0.00.1-0.10.3
Total locomotion distance, hab. session 21.01.32.71.01.11.1-0.51.7
Locomotion velocity, hab. session 21.01.43.01.01.11.1-0.71.7
Novel to familiar place preference ratio0.91.01.6-1.0-1.1-1.0-0.0-1.3
Novelty place preference1.21.31.9-1.2-1.3-1.1-0.1-1.4
Time in novel zone, NPP test1.31.42.1-1.3-1.4-1.2-0.4-1.3
Total zone transitions, NPP test0.40.51.40.10.40.4-1.01.2
Total locomotion distance, NPP test1.11.53.40.50.80.9-1.51.8
Locomotion velocity, NPP test0.81.12.50.40.60.6-1.51.6
Intraocular pressure0.40.51.60.70.10.31.3-0.7
Delta distance traveled before/after self-admin0.70.81.10.81.11.00.50.8
Delta ambulatory time before/after self-admin0.20.20.40.30.60.50.30.5
Parametrial fat weight1.02.58.30.7-0.3-0.32.9-1.8
Pavlov. Cond. lever latency6.37.911.8-2.9-3.4-3.00.4-3.2
Pavlov. Cond. magazine entry latency0.40.61.21.11.00.70.30.4
Pavlov. Cond. change in total contacts4.64.97.52.72.72.40.71.9
Pavlov. Cond. index score2.73.45.02.02.21.9-0.42.0
Pavlov. Cond. latency score3.84.87.12.32.72.3-0.62.4
Pavlov. Cond. lever contacts5.36.39.52.73.12.7-0.32.7
Pavlov. Cond. magazine entry number0.60.81.5-1.2-1.1-0.9-0.4-0.5
Pavlov. Cond. intertrial magazine entries1.21.42.51.11.31.30.01.6
Pavlov. Cond. lever-magazine prob. diff.2.22.74.11.92.01.7-0.31.7
Pavlov. Cond. response bias1.62.03.21.71.81.50.21.3
Pavlov. Cond. lever latency0.50.71.2-1.1-1.1-0.9-0.5-0.4
Pavlov. Cond. magazine entry latency0.60.71.71.01.30.60.50.5
Pavlov. Cond. change in total contacts0.71.21.91.31.41.20.60.7
Pavlov. Cond. index score0.81.12.01.31.41.00.80.5
Pavlov. Cond. latency score0.70.91.91.11.40.90.40.6
Pavlov. Cond. lever contacts0.60.81.41.01.21.00.40.6
Pavlov. Cond. magazine entry number1.21.52.6-1.6-1.5-1.1-1.0-0.5
Pavlov. Cond. intertrial magazine entries0.71.01.9-1.3-1.4-0.9-0.7-0.4
Pavlov. Cond. lever-magazine prob. diff.1.01.32.31.41.51.10.80.6
Pavlov. Cond. response bias0.70.91.41.21.21.00.80.5
Time in closed arm before self-admin4.35.510.72.82.22.03.30.7
Time in closed arm after self-admin1.92.17.80.7-0.2-0.02.8-1.4
Time in open arm before self-admin1.51.63.30.21.01.0-1.61.8
Time in open arm after self-admin4.04.47.71.42.11.7-2.32.8
Bone: periosteal estimation1.02.04.11.71.11.42.00.3
Bone: periosteal perimeter2.84.810.02.31.92.13.20.6
Bone: post-yield work0.00.00.10.0-0.00.1-0.10.3
Progressive ratio test 1 active lever presses1.41.86.50.61.00.92.60.5
Progressive ratio test 1 breakpoint1.41.76.00.60.90.92.50.5
Progressive ratio test 1 inactive lever presses1.11.53.61.40.91.01.90.4
Progressive ratio test 2 active lever presses0.60.71.8-0.6-0.6-0.51.3-0.9
Progressive ratio test 2 breakpoint0.50.61.3-0.6-0.6-0.51.1-0.8
Progressive ratio test 2 inactive lever presses0.61.04.10.50.50.52.0-0.0
Incentive Sensitization - Responses2.23.14.1-1.9-2.0-1.80.3-2.0
Incentive Sensitization - Breakpoint2.73.54.8-2.1-2.2-2.0-0.0-2.1
Sum of active levers in priming session hrs 5-61.51.45.5-0.9-0.5-0.6-2.30.3
Progressive ratio0.20.30.6-0.4-0.6-0.7-0.2-0.8
Food seeking constrained by brief footshock0.20.20.4-0.6-0.3-0.5-0.5-0.1
Seeking ratio, punishment vs. effort0.30.40.90.20.50.4-0.70.9
Retroperitoneal fat weight1.45.812.63.11.72.03.5-0.1
Reaction time number correct1.63.15.21.71.91.8-0.62.3
Reaction time mean minus median0.00.10.2-0.30.30.1-0.20.5
Reaction time mean minus median AUC0.00.10.2-0.40.20.10.40.4
Reaction time num false alarms0.20.31.1-0.50.40.41.00.3
Reaction time num false alarms AUC0.10.20.5-0.60.10.20.70.1
Reaction time trials correct on left1.63.15.21.71.91.8-0.62.3
Reaction time trials on left1.73.25.51.71.91.9-0.62.3
Reaction time mean0.91.42.4-1.1-1.0-1.01.1-1.6
Reaction time mean AUC1.21.92.7-1.6-1.4-1.40.6-1.6
Median of all reaction times1.82.64.9-1.4-1.6-1.51.3-2.2
Reaction time omissions0.30.51.0-0.40.60.61.00.7
Reaction time false alarm rate0.40.61.2-1.0-0.5-0.31.1-0.7
Reaction time premature initiation rate1.01.33.30.61.41.0-0.31.8
Reaction time premature initiations2.03.67.41.42.21.8-0.42.7
Std. dev. reaction times0.10.20.3-0.40.40.30.60.3
Reaction time trials completed1.73.25.51.71.91.9-0.62.3
Reaction time trials AUC1.52.94.61.71.91.8-0.42.2
Run reversals in cocaine runway, females1.71.75.40.91.01.02.30.3
Run reversals in cocaine runway, males0.50.51.3-0.9-0.1-0.3-1.10.6
Latency to leave start box in cocaine runway0.10.10.20.1-0.0-0.30.4-0.3
Latency to leave start box in cocaine runway, F0.40.50.70.80.80.50.80.5
Latency to leave start box in cocaine runway, M2.42.33.1-1.6-1.7-1.8-0.4-1.6
Std. dev. time between licks in bursts1.01.32.11.31.01.21.40.4
Total sessions with >9 infusions2.02.48.91.20.91.03.00.1
Short access day 1 total inactive lever presses1.21.64.50.7-0.5-0.52.1-1.5
Short access day 10 total inactive lever presses0.00.00.1-0.1-0.2-0.2-0.2-0.2
Short access day 1 total infusions1.92.55.92.01.21.22.40.1
Short access day 10 total infusions0.70.93.60.90.30.41.9-0.3
Short access total infusions1.01.35.60.60.20.32.4-0.5
Short access day 1 locomotion2.63.210.61.80.91.03.2-0.5
Short access day 10 total locomotion2.95.36.62.42.62.51.92.1
Short access total locomotion2.12.67.01.41.31.42.70.6
One hour access (0.3 mA shock)0.50.61.5-0.3-0.7-0.70.8-1.2
Compulsive drug intake1.61.92.4-1.6-1.5-1.5-1.1-1.2
One hour access (shock baseline)0.61.03.80.70.40.41.9-0.4
Social response proportion2.42.73.71.61.91.81.51.2
Social responses2.02.53.61.61.81.9-0.21.8
Social time0.50.71.30.80.81.1-0.10.8
Soleus weight0.41.03.2-0.1-0.5-0.51.8-1.2
Bone: stiffness5.18.312.53.53.03.03.01.5
Tibialis anterior weight1.34.46.82.32.62.20.02.3
Time to tail flick, vehicle, before self-admin1.61.72.7-1.7-1.3-1.50.7-1.2
Time to tail flick, vehicle, after self-admin0.20.31.21.10.40.40.3-0.0
Time to tail flick, test, before self-admin0.80.83.20.30.50.61.80.1
Time to tail flick, test, after self-admin3.13.24.8-2.2-2.0-2.0-0.4-1.7
Delta time to tail flick, vehicle, before/after SA1.31.23.01.71.01.1-0.50.8
Delta time to tail flick, test, before/after SA1.71.82.3-1.3-1.5-1.5-1.2-1.1
Tibia length1.12.94.22.12.01.61.51.2
Ambulatory time before self-admin1.11.62.81.71.31.21.00.9
Ambulatory time after self-admin3.74.35.72.32.42.21.32.0
Bone: tissue strength0.00.00.10.20.00.30.20.1
Total heroin consumption0.20.20.9-0.9-0.1-0.1-0.20.3
Bone: trabecular number2.23.76.02.22.51.80.81.9
Bone: trabecular spacing0.71.01.6-1.0-1.2-1.1-0.3-1.0
Bone: trabecular thickness2.32.83.71.91.91.90.61.7
Bone: trabecular tissue density0.20.20.80.2-0.00.3-0.90.5
Water consumed over 24 hours0.71.01.90.61.21.0-0.11.4
Number of responses in last shaping day0.40.50.90.90.70.70.60.5