Fau

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain isoform ratio NM_001160231.1 0.03 0.02 5.3e-03 0.01 0.02 0.01 0.01 8.8e-02 7.8e-03 3.0e-02 4.6e-02
2 Liver intron excision ratio chr1_203350280_203350527 0.05 0.04 8.7e-03 0 0 0.01 0.01 9.0e-02 1.1e-01 6.8e-02 5.0e-02
3 Liver isoform ratio NM_001160231.1 0.07 0.05 1.6e-03 0.01 0.01 0.01 0.01 1.2e-02 2.1e-02 1.1e-02 2.2e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.50.82.11.50.4-0.5
Area under the delay curve0.00.00.00.20.10.1
BMI with tail3.812.222.44.72.7-2.6
BMI without tail1.94.06.82.61.8-1.4
Body weight4.418.622.94.84.0-4.1
Weight adjusted by age2.32.63.21.51.6-1.8
Bone surface4.07.111.53.41.9-2.5
Bone volume1.42.35.02.20.7-1.2
Breakpoint value in progressive ratio session2.52.73.41.81.5-1.6
Number of licking bursts0.10.20.30.60.3-0.2
Context. condit. distance diff. score1.41.71.9-1.4-1.31.3
Locomotion velocity, session 10.20.30.40.00.6-0.7
Locomotion distance, session 11.01.31.61.31.1-1.0
Locomotion velocity, session 23.64.25.02.21.9-2.0
Locomotion distance, session 21.01.51.81.31.3-0.9
Locomotion velocity, session 30.10.10.10.3-0.1-0.4
Locomotion distance, session 30.00.00.0-0.1-0.1-0.0
Stereotopy head waving bouts, day 30.10.10.2-0.0-0.3-0.4
Stereotopy head waving duration, day 30.20.20.5-0.4-0.70.2
Locomotion velocity, session 70.20.20.40.2-0.60.5
Locomotion distance, session 70.00.00.00.10.2-0.1
Stereotopy head waving bouts, day 70.30.40.60.0-0.80.7
Stereotopy head waving duration, day 70.70.82.01.40.6-0.2
Locomotion velocity, session 81.72.03.10.91.5-1.8
Locomotion distance, session 80.00.10.10.2-0.3-0.2
Degree of sensitization distance0.10.10.20.40.1-0.5
Degree of sensitization stereotypy0.20.30.80.90.00.1
Conditioned locomotion1.92.22.41.41.5-1.6
Cocaine response after cond. corrected0.60.71.4-1.2-0.70.5
Cocaine response after cond. not corrected0.40.50.9-1.0-0.70.1
Cocaine response before conditioning0.40.40.80.90.4-0.6
Saline control response4.66.16.52.32.6-2.5
Bone: connectivity density2.23.56.12.51.5-1.5
Bone: cortical apparent density0.20.20.50.10.70.5
Bone: cortical area0.50.81.11.10.6-1.0
Bone: cortical porosity0.10.10.30.60.20.2
Bone: cortical porosity0.50.61.01.00.8-0.4
Bone: cortical thickness2.03.25.11.42.2-1.6
Bone: cortical thickness0.60.71.60.21.3-0.7
Bone: cortical tissue density0.20.30.60.20.80.4
Condit. Reinf. active minus inactive responses0.10.10.20.50.50.0
Condit. Reinf. active-inactive response ratio0.10.20.4-0.10.20.7
Condit. Reinf. active responses0.10.10.20.40.0-0.1
Condit. Reinf. inactive responses0.20.20.30.4-0.5-0.4
Incentive salience index mean0.40.50.90.90.6-0.5
Condit. Reinf. lever presses0.60.91.21.10.4-1.1
Condit. Reinf. active minus inactive responses0.30.30.6-0.2-0.80.6
Condit. Reinf. active-inactive response ratio0.80.92.3-0.3-1.50.5
Condit. Reinf. active responses0.10.10.20.3-0.10.5
Condit. Reinf. inactive responses0.30.40.90.51.00.1
Condit. Reinf. lever presses1.52.03.31.81.0-1.3
Condit. Reinf. lever reinforcers received0.10.10.30.50.20.2
Conditioned reinforcement - actives0.40.40.7-0.5-0.9-0.4
Conditioned reinforcement - inactives7.28.110.0-2.9-3.22.4
Conditioned locomotion8.410.112.9-3.6-3.52.3
Patch foraging indifference point 0 sec0.10.10.2-0.2-0.40.4
Patch foraging indifference point AUC2.22.63.41.81.6-1.3
Delay disc. indifference point, 0s delay0.00.00.0-0.1-0.00.1
Delay disc. indifference point, 16s delay1.21.22.1-0.8-1.01.4
Delay disc. indifference point, 2s delay0.00.00.10.0-0.30.1
Delay disc. indifference point, 24s delay0.10.10.2-0.40.3-0.3
Delay disc. indifference point, 4s delay0.00.00.1-0.10.3-0.2
Delay disc. indifference point, 8s delay0.10.10.20.00.5-0.2
Indifference point function ln k6.08.411.1-3.3-2.72.6
Indifference point function log k6.08.411.1-3.3-2.72.6
Patch foraging total patch changes 0 sec0.00.10.1-0.3-0.10.2
Patch foraging total patch changes 12 sec3.44.46.02.42.2-1.6
Patch foraging total patch changes 18 sec0.40.51.11.00.4-0.4
Patch foraging total patch changes 24 sec2.12.53.01.41.6-1.7
Patch foraging total patch changes 6 sec0.81.21.41.21.1-1.0
Patch foraging time to switch 0 sec1.82.76.12.51.1-1.0
Patch foraging water rate 0 sec4.06.410.9-3.3-2.21.9
Patch foraging water rate 12 sec7.110.819.2-4.4-2.62.5
Patch foraging water rate 18 sec1.92.55.1-2.3-1.30.8
Patch foraging water rate 24 sec2.94.07.6-2.8-1.81.1
Patch foraging water rate 6 sec2.84.08.7-3.0-1.51.1
Seeking ratio, delayed vs. immediate footshock0.40.51.4-0.10.01.2
Distance traveled before self-admin0.40.50.80.90.5-0.6
Distance traveled after self-admin0.00.00.10.30.20.1
Extensor digitorum longus weight7.931.035.86.05.5-5.2
Bone: elastic displacement1.01.13.0-1.7-0.50.5
Bone: elastic work1.01.32.20.41.5-1.2
Bone: endosteal estimation0.40.82.30.0-1.50.1
Bone: endosteal perimeter0.71.54.2-0.2-2.10.4
Epididymis fat weight2.04.87.3-1.9-2.71.8
Delta time in closed arm before/after self-admin0.80.71.50.00.8-1.2
Delta time in open arm before/after self-admin0.20.20.30.0-0.40.5
Diff in mean of infusions in LGA sessions0.40.51.10.30.5-1.0
Delay discount exponential model param0.00.00.0-0.2-0.2-0.0
Extinction: sum of active levers before priming3.93.96.02.41.9-1.4
Active lever presses in extinction session 62.82.74.81.41.1-2.2
Bone: final force3.35.36.62.62.0-2.4
Bone: final moment2.94.75.92.41.8-2.2
Food consumed during 24 hour testing period0.00.00.1-0.3-0.20.2
Glucose1.11.62.9-0.9-1.71.1
Heart weight2.43.44.2-2.0-1.91.5
Delay discount hyperbolic model param0.00.00.1-0.2-0.20.0
Intermittent access intake day 1-15 change1.01.01.6-1.2-1.20.2
Intermittent access intake escalation0.90.91.4-1.0-1.20.5
Intermittent access intake escalation 20.40.40.6-0.8-0.80.3
Intermitt. access day 1 inactive lever presses2.52.63.5-1.7-1.91.3
Intermitt. access day 15 inactive lever presses2.73.04.5-1.8-2.11.2
Intermitt. access escalation Index3.83.46.3-1.4-1.42.5
Intermittent access day 1 total infusions3.74.36.9-1.5-2.61.9
Intermittent access day 15 total infusions7.38.112.8-2.7-3.62.1
Intermittent access terminal intake (last 3 days)4.85.29.2-1.9-3.01.7
Intermittent access total infusions3.84.27.3-1.6-2.71.7
Intermittent access day 1 locomotion1.81.83.5-1.0-1.91.0
Intermittent access day 15 total locomotion4.24.67.8-2.0-2.81.3
Intermittent access total locomotion4.65.39.6-1.7-3.11.8
Intermittent access standard deviation1.31.42.2-1.4-1.50.3
Left kidney weight0.82.32.9-1.2-1.71.7
Right kidney weight0.20.71.4-0.6-1.20.5
Cocaine induced anxiety0.00.00.10.1-0.2-0.2
Post-drug Anxiety1.82.14.21.10.9-2.1
Baseline Anxiety3.53.86.81.41.6-2.6
Tail length0.61.92.90.61.7-1.6
Length with tail2.17.69.62.22.9-3.1
Length without tail2.55.57.12.12.2-2.7
Times rat made contact with spout0.40.41.00.51.0-0.1
Lifetime Intake3.03.45.9-1.4-2.41.6
Liver weight, left0.00.00.1-0.0-0.20.1
Liver weight, right0.10.20.60.00.1-0.8
Locomotor activity1.32.04.9-2.2-1.00.3
Locomotor testing distance1.62.77.0-2.6-1.00.4
Locomotor testing rearing1.42.15.0-2.2-1.00.6
Locomotion in novel chamber4.45.47.9-2.3-2.81.8
Locomotion in novel chamber post-restriction3.03.64.4-1.9-2.11.7
Fecal boli incidents, locomotor time 10.20.20.40.4-0.60.1
Change in fecal boli incidents, locomotor task0.80.71.50.30.8-1.2
Time >=10cm from walls, locomotor time 10.70.72.00.3-1.4-0.1
Bouts of movement, locomotor time 10.70.71.80.61.30.0
Total resting periods, locomotor time 10.40.40.90.61.00.2
Rest time, locomotor task time 10.91.01.8-1.3-1.10.2
Distance moved, locomotor task time 10.20.20.50.70.20.2
Vertical activity count, locomotor time 11.31.31.5-1.2-1.11.1
Time >=10cm from walls, locomotor time 20.10.10.10.3-0.30.3
Bouts of movement, locomotor time 20.20.20.40.40.60.3
Total resting periods, locomotor time 20.10.10.20.30.30.5
Rest time, locomotor task time 21.31.52.2-1.4-1.50.6
Distance moved, locomotor task time 20.60.71.10.91.1-0.5
Vertical activity count, locomotor time 20.20.20.5-0.70.3-0.4
Light reinforcement 10.20.40.6-0.8-0.50.6
Light reinforcement 21.21.62.8-1.0-1.71.0
Bone: marrow area0.40.82.3-0.0-1.50.1
Bone: maximum diameter0.30.61.00.8-0.2-1.0
Bone: maximum force3.86.610.43.21.9-2.4
Bone: maximum moment3.35.79.03.01.7-2.3
Mean time between licks in bursts1.11.52.30.51.5-1.4
Mean num. licks in bursts0.20.20.3-0.6-0.10.6
Cd content in liver1.92.12.7-1.4-1.61.2
Co content in liver2.12.54.6-2.1-0.61.6
Cu content in liver0.20.20.30.60.50.3
Fe content in liver0.30.40.90.50.2-1.0
K content in liver2.52.43.71.91.3-1.4
Mg content in liver0.40.41.01.00.30.1
Mn content in liver2.02.33.21.81.2-1.5
Na content in liver1.11.21.61.10.8-1.3
Rb content in liver1.41.82.8-1.1-1.21.7
Se content in liver0.20.20.60.2-0.80.3
Sr content in liver2.01.82.71.21.6-1.1
Zn content in liver0.80.91.51.21.1-0.5
Bone: minimum diameter0.51.02.00.0-1.41.0
Time in familiar zone, hab. session 10.10.10.3-0.2-0.50.3
Time in novel zone, hab. session 10.20.20.6-0.80.1-0.1
Total zone transitions, hab. session 10.40.61.01.00.9-0.3
Total locomotion distance, hab. session 10.10.10.3-0.1-0.50.2
Locomotion velocity, hab. session 10.00.00.10.3-0.10.1
Time in familiar zone, hab. session 20.30.30.6-0.30.5-0.8
Time in novel zone, hab. session 20.20.20.40.4-0.00.6
Total zone transitions, hab. session 21.92.54.22.01.5-1.0
Total locomotion distance, hab. session 20.20.30.60.80.3-0.3
Locomotion velocity, hab. session 20.10.20.50.7-0.1-0.2
Novel to familiar place preference ratio0.50.51.51.20.3-0.2
Novelty place preference0.20.20.60.80.00.2
Time in novel zone, NPP test0.20.20.50.70.00.2
Total zone transitions, NPP test2.53.64.92.21.8-1.6
Total locomotion distance, NPP test0.20.30.60.70.4-0.5
Locomotion velocity, NPP test0.20.30.60.70.4-0.3
Intraocular pressure1.21.72.6-1.5-1.60.6
Delta distance traveled before/after self-admin0.10.10.2-0.40.00.1
Delta ambulatory time before/after self-admin0.10.10.1-0.30.2-0.1
Parametrial fat weight1.83.45.2-1.1-2.32.0
Pavlov. Cond. lever latency0.40.50.9-1.0-0.50.7
Pavlov. Cond. magazine entry latency0.30.30.90.90.30.3
Pavlov. Cond. change in total contacts0.30.30.60.5-0.40.8
Pavlov. Cond. index score0.10.10.30.60.20.1
Pavlov. Cond. latency score0.10.10.30.60.2-0.0
Pavlov. Cond. lever contacts0.10.10.10.40.2-0.2
Pavlov. Cond. magazine entry number0.10.10.2-0.4-0.1-0.3
Pavlov. Cond. intertrial magazine entries1.21.41.5-1.2-1.21.2
Pavlov. Cond. lever-magazine prob. diff.0.20.30.70.90.4-0.1
Pavlov. Cond. response bias0.10.10.10.30.10.3
Pavlov. Cond. lever latency0.50.61.0-1.0-0.30.9
Pavlov. Cond. magazine entry latency2.73.14.92.21.8-1.1
Pavlov. Cond. change in total contacts0.91.23.21.80.6-0.3
Pavlov. Cond. index score1.72.24.12.01.1-1.0
Pavlov. Cond. latency score1.51.83.51.91.0-1.0
Pavlov. Cond. lever contacts0.30.50.80.70.3-0.9
Pavlov. Cond. magazine entry number4.35.38.5-2.9-2.31.4
Pavlov. Cond. intertrial magazine entries0.81.01.4-1.1-1.20.6
Pavlov. Cond. lever-magazine prob. diff.2.12.64.72.21.4-1.2
Pavlov. Cond. response bias1.21.62.61.61.0-1.1
Time in closed arm before self-admin0.10.10.20.4-0.30.1
Time in closed arm after self-admin0.10.10.2-0.00.0-0.4
Time in open arm before self-admin0.50.50.9-1.00.20.8
Time in open arm after self-admin0.60.71.2-0.9-0.21.1
Bone: periosteal estimation0.20.40.50.7-0.6-0.6
Bone: periosteal perimeter0.30.40.70.9-0.2-0.7
Bone: post-yield work1.41.95.62.4-0.4-0.2
Progressive ratio test 1 active lever presses3.33.53.8-1.8-2.01.8
Progressive ratio test 1 breakpoint3.23.33.4-1.8-1.81.8
Progressive ratio test 1 inactive lever presses1.51.61.7-1.2-1.21.3
Progressive ratio test 2 active lever presses4.75.17.4-2.1-2.71.9
Progressive ratio test 2 breakpoint6.26.98.8-2.6-3.02.3
Progressive ratio test 2 inactive lever presses9.110.514.7-3.0-3.82.8
Incentive Sensitization - Responses0.70.71.3-0.6-1.10.6
Incentive Sensitization - Breakpoint1.01.01.8-0.8-1.30.8
Sum of active levers in priming session hrs 5-61.11.02.50.70.3-1.6
Progressive ratio3.03.56.32.51.5-1.4
Food seeking constrained by brief footshock0.30.30.60.20.8-0.7
Seeking ratio, punishment vs. effort2.22.75.5-2.3-1.01.2
Retroperitoneal fat weight5.016.319.9-3.6-4.54.0
Reaction time number correct0.50.71.40.40.8-1.2
Reaction time mean minus median2.33.15.02.21.4-1.5
Reaction time mean minus median AUC1.21.62.11.41.1-1.3
Reaction time num false alarms0.20.20.6-0.80.10.0
Reaction time num false alarms AUC0.20.30.5-0.10.7-0.6
Reaction time trials correct on left0.50.71.40.40.8-1.2
Reaction time trials on left0.60.91.60.50.9-1.3
Reaction time mean0.10.10.30.2-0.30.6
Reaction time mean AUC0.20.20.40.2-0.40.7
Median of all reaction times0.40.51.0-0.2-0.61.0
Reaction time omissions0.91.21.51.21.2-0.8
Reaction time false alarm rate0.10.10.3-0.6-0.00.1
Reaction time premature initiation rate3.04.06.81.52.6-1.7
Reaction time premature initiations4.46.29.81.83.1-2.4
Std. dev. reaction times0.40.51.11.00.5-0.4
Reaction time trials completed0.60.91.60.50.9-1.3
Reaction time trials AUC0.40.61.30.30.7-1.1
Run reversals in cocaine runway, females1.21.21.61.31.1-0.8
Run reversals in cocaine runway, males0.40.41.0-1.0-0.4-0.1
Latency to leave start box in cocaine runway0.10.20.20.4-0.40.4
Latency to leave start box in cocaine runway, F0.30.41.10.3-0.11.0
Latency to leave start box in cocaine runway, M0.30.30.80.3-0.3-0.9
Std. dev. time between licks in bursts0.30.30.4-0.50.5-0.6
Total sessions with >9 infusions0.91.01.7-0.8-1.30.7
Short access day 1 total inactive lever presses3.13.54.0-2.0-2.01.6
Short access day 10 total inactive lever presses3.23.55.0-2.2-1.81.5
Short access day 1 total infusions2.52.63.9-1.0-1.72.0
Short access day 10 total infusions0.91.01.9-0.2-1.41.0
Short access total infusions0.70.71.5-0.4-1.20.8
Short access day 1 locomotion1.31.42.5-0.9-1.60.9
Short access day 10 total locomotion1.01.11.6-0.7-1.31.1
Short access total locomotion0.60.61.1-0.6-1.10.7
One hour access (0.3 mA shock)9.911.615.4-3.4-3.92.8
Compulsive drug intake1.91.94.51.02.1-0.4
One hour access (shock baseline)8.910.316.3-3.0-4.02.3
Social response proportion0.80.81.11.00.7-1.0
Social responses0.30.40.90.30.6-0.9
Social time0.70.91.40.41.0-1.2
Soleus weight3.49.911.2-3.3-3.32.8
Bone: stiffness2.64.17.62.81.4-1.6
Tibialis anterior weight10.536.038.26.05.9-6.2
Time to tail flick, vehicle, before self-admin1.01.01.41.20.5-1.2
Time to tail flick, vehicle, after self-admin2.62.83.11.81.6-1.6
Time to tail flick, test, before self-admin0.10.10.2-0.1-0.50.2
Time to tail flick, test, after self-admin0.10.10.10.00.2-0.4
Delta time to tail flick, vehicle, before/after SA0.70.71.10.81.0-0.7
Delta time to tail flick, test, before/after SA0.40.40.70.20.9-0.5
Tibia length0.71.92.81.60.6-1.7
Ambulatory time before self-admin0.20.30.60.80.0-0.4
Ambulatory time after self-admin0.40.40.8-0.0-0.70.9
Bone: tissue strength0.00.00.00.2-0.20.0
Total heroin consumption4.95.76.72.62.6-2.0
Bone: trabecular number0.40.71.91.40.2-0.3
Bone: trabecular spacing0.20.20.5-0.70.00.2
Bone: trabecular thickness0.60.71.0-0.4-1.01.0
Bone: trabecular tissue density3.65.15.7-2.4-2.42.0
Water consumed over 24 hours0.40.51.20.51.1-0.1
Number of responses in last shaping day1.21.32.2-1.5-1.00.8