Exoc3l1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Exoc3l1 0.04 0.04 1.7e-03 0.02 0.02 0.02 0.02 2.3e-03 4.9e-03 1.1e-02 5.4e-03
2 Brain intron excision ratio chr19_50079034_50079134 0.05 0.04 4.4e-04 0.01 0.03 0.01 0.02 1.2e-02 1.0e-03 4.1e-02 8.5e-03
3 Eye alternative TSS NM_001106178.1 0.88 0.1 4.8e-03 0.08 0.04 0.04 0.08 2.4e-02 8.2e-02 9.8e-02 2.2e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.10.20.5-0.30.3
Area under the delay curve0.00.00.00.00.0-0.2
BMI with tail0.00.10.10.3-0.3-0.3
BMI without tail0.00.00.0-0.2-0.0-0.0
Body weight0.31.41.51.2-1.2-1.2
Weight adjusted by age0.00.10.20.0-0.10.4
Bone surface1.22.23.01.7-1.5-1.1
Bone volume0.91.72.51.6-1.4-0.8
Breakpoint value in progressive ratio session2.12.63.0-1.51.61.7
Number of licking bursts0.60.91.11.0-0.9-0.9
Context. condit. distance diff. score0.00.00.0-0.00.2-0.1
Locomotion velocity, session 10.10.10.20.3-0.2-0.4
Locomotion distance, session 10.00.10.1-0.30.3-0.0
Locomotion velocity, session 20.50.60.8-0.90.80.6
Locomotion distance, session 20.10.10.2-0.40.3-0.1
Locomotion velocity, session 30.30.30.4-0.50.60.6
Locomotion distance, session 30.10.10.1-0.20.2-0.3
Stereotopy head waving bouts, day 30.10.10.20.2-0.3-0.4
Stereotopy head waving duration, day 30.40.50.60.7-0.8-0.5
Locomotion velocity, session 70.10.10.30.10.10.5
Locomotion distance, session 70.00.10.1-0.20.20.3
Stereotopy head waving bouts, day 70.10.10.20.4-0.30.1
Stereotopy head waving duration, day 70.30.40.60.8-0.6-0.4
Locomotion velocity, session 80.20.30.70.10.20.8
Locomotion distance, session 80.20.30.5-0.60.70.2
Degree of sensitization distance0.00.00.00.1-0.10.1
Degree of sensitization stereotypy0.20.20.30.6-0.5-0.2
Conditioned locomotion2.22.52.71.5-1.6-1.6
Cocaine response after cond. corrected0.20.30.40.6-0.6-0.3
Cocaine response after cond. not corrected0.00.00.00.10.00.1
Cocaine response before conditioning1.11.31.7-1.31.30.7
Saline control response4.55.96.52.4-2.5-2.4
Bone: connectivity density0.10.20.4-0.10.30.6
Bone: cortical apparent density1.11.52.0-1.01.21.4
Bone: cortical area0.30.50.80.9-0.7-0.4
Bone: cortical porosity0.10.10.2-0.50.4-0.0
Bone: cortical porosity0.10.10.2-0.40.4-0.0
Bone: cortical thickness0.20.30.40.6-0.40.5
Bone: cortical thickness0.00.00.00.1-0.20.0
Bone: cortical tissue density1.11.52.0-1.01.21.4
Condit. Reinf. active minus inactive responses3.74.14.7-2.12.21.8
Condit. Reinf. active-inactive response ratio3.13.34.1-2.02.01.4
Condit. Reinf. active responses2.53.13.6-1.91.91.4
Condit. Reinf. inactive responses0.10.20.3-0.50.40.3
Incentive salience index mean1.92.32.5-1.51.61.4
Condit. Reinf. lever presses0.20.20.5-0.30.40.7
Condit. Reinf. active minus inactive responses0.91.21.31.2-1.0-1.1
Condit. Reinf. active-inactive response ratio0.50.60.91.0-0.8-0.5
Condit. Reinf. active responses0.50.80.90.9-0.8-0.9
Condit. Reinf. inactive responses0.10.10.1-0.40.30.0
Condit. Reinf. lever presses2.23.13.5-1.61.81.9
Condit. Reinf. lever reinforcers received0.10.10.20.4-0.3-0.3
Conditioned reinforcement - actives0.61.01.5-1.21.0-0.7
Conditioned reinforcement - inactives0.10.20.40.5-0.2-0.6
Conditioned locomotion0.91.11.51.1-0.8-1.2
Patch foraging indifference point 0 sec3.25.96.32.3-2.4-2.5
Patch foraging indifference point AUC1.62.42.71.6-1.6-1.4
Delay disc. indifference point, 0s delay0.70.81.0-0.90.81.0
Delay disc. indifference point, 16s delay0.60.61.70.3-0.4-1.3
Delay disc. indifference point, 2s delay0.20.20.50.7-0.4-0.0
Delay disc. indifference point, 24s delay0.30.31.00.0-0.1-1.0
Delay disc. indifference point, 4s delay0.30.40.6-0.40.60.8
Delay disc. indifference point, 8s delay0.00.00.0-0.10.0-0.0
Indifference point function ln k0.20.30.5-0.60.70.1
Indifference point function log k0.20.30.5-0.60.70.1
Patch foraging total patch changes 0 sec3.15.86.22.3-2.4-2.5
Patch foraging total patch changes 12 sec3.03.94.11.9-2.0-2.0
Patch foraging total patch changes 18 sec2.94.44.92.0-2.1-2.2
Patch foraging total patch changes 24 sec0.20.30.60.8-0.60.0
Patch foraging total patch changes 6 sec1.72.63.31.8-1.8-1.2
Patch foraging time to switch 0 sec0.81.72.1-1.11.31.5
Patch foraging water rate 0 sec1.42.93.01.6-1.7-1.7
Patch foraging water rate 12 sec0.10.20.30.5-0.4-0.5
Patch foraging water rate 18 sec0.10.20.40.5-0.2-0.6
Patch foraging water rate 24 sec0.00.00.0-0.1-0.1-0.1
Patch foraging water rate 6 sec0.71.01.31.1-1.0-0.9
Seeking ratio, delayed vs. immediate footshock2.53.13.31.8-1.8-1.6
Distance traveled before self-admin0.60.82.01.4-0.70.1
Distance traveled after self-admin0.10.10.20.5-0.30.1
Extensor digitorum longus weight0.62.42.6-1.61.61.5
Bone: elastic displacement1.51.81.91.3-1.4-1.4
Bone: elastic work0.40.60.70.8-0.8-0.6
Bone: endosteal estimation0.20.41.00.3-0.4-1.0
Bone: endosteal perimeter0.40.91.80.6-0.7-1.3
Epididymis fat weight2.48.310.52.7-2.7-3.2
Delta time in closed arm before/after self-admin0.10.10.10.3-0.4-0.2
Delta time in open arm before/after self-admin0.80.82.2-0.00.31.5
Diff in mean of infusions in LGA sessions0.70.81.3-0.80.81.2
Delay discount exponential model param0.00.00.00.1-0.10.2
Extinction: sum of active levers before priming0.70.71.2-1.10.90.4
Active lever presses in extinction session 60.00.00.00.0-0.1-0.1
Bone: final force0.81.31.6-1.01.11.2
Bone: final moment0.30.50.7-0.60.70.8
Food consumed during 24 hour testing period1.11.53.90.4-0.7-2.0
Glucose1.62.52.8-1.71.71.3
Heart weight0.00.00.0-0.10.20.2
Delay discount hyperbolic model param0.00.00.00.2-0.2-0.1
Intermittent access intake day 1-15 change0.91.83.1-1.71.50.3
Intermittent access intake escalation1.02.03.3-1.81.60.5
Intermittent access intake escalation 20.70.81.5-1.21.0-0.0
Intermitt. access day 1 inactive lever presses0.00.00.1-0.30.1-0.2
Intermitt. access day 15 inactive lever presses0.00.10.2-0.20.40.3
Intermitt. access escalation Index0.20.30.40.6-0.6-0.3
Intermittent access day 1 total infusions0.20.30.9-0.40.1-0.9
Intermittent access day 15 total infusions1.31.93.4-1.91.5-0.4
Intermittent access terminal intake (last 3 days)2.12.74.7-2.21.8-0.1
Intermittent access total infusions1.61.93.5-1.91.5-0.3
Intermittent access day 1 locomotion1.41.82.51.1-1.3-1.6
Intermittent access day 15 total locomotion0.20.40.70.5-0.5-0.8
Intermittent access total locomotion0.10.10.40.2-0.2-0.6
Intermittent access standard deviation0.20.40.50.5-0.5-0.7
Left kidney weight1.36.27.2-2.42.72.4
Right kidney weight1.56.67.1-2.42.72.6
Cocaine induced anxiety2.02.93.82.0-1.9-1.2
Post-drug Anxiety0.50.50.60.7-0.7-0.8
Baseline Anxiety1.21.42.4-1.51.40.2
Tail length0.00.00.1-0.0-0.2-0.3
Length with tail0.10.60.70.8-0.8-0.7
Length without tail0.61.81.91.4-1.3-1.4
Times rat made contact with spout1.82.02.81.2-1.4-1.7
Lifetime Intake1.31.63.0-1.71.4-0.3
Liver weight, left0.20.30.50.7-0.6-0.2
Liver weight, right0.50.91.10.8-1.0-1.0
Locomotor activity2.23.54.92.2-2.1-1.1
Locomotor testing distance1.83.24.22.0-2.0-1.2
Locomotor testing rearing0.20.30.60.8-0.70.0
Locomotion in novel chamber2.22.83.61.9-1.7-1.4
Locomotion in novel chamber post-restriction1.32.23.01.6-1.7-1.0
Fecal boli incidents, locomotor time 10.81.21.60.9-1.3-1.1
Change in fecal boli incidents, locomotor task0.40.40.7-0.70.80.4
Time >=10cm from walls, locomotor time 10.20.30.50.2-0.7-0.5
Bouts of movement, locomotor time 10.10.20.40.1-0.2-0.6
Total resting periods, locomotor time 10.10.10.2-0.20.1-0.4
Rest time, locomotor task time 10.20.30.5-0.50.40.7
Distance moved, locomotor task time 10.20.30.50.5-0.4-0.7
Vertical activity count, locomotor time 10.81.93.21.1-1.2-1.8
Time >=10cm from walls, locomotor time 20.71.01.7-0.90.61.3
Bouts of movement, locomotor time 20.50.81.2-1.11.00.5
Total resting periods, locomotor time 20.61.01.5-1.21.10.6
Rest time, locomotor task time 20.50.61.2-1.10.80.3
Distance moved, locomotor task time 20.50.61.11.0-0.8-0.4
Vertical activity count, locomotor time 21.11.51.71.3-1.2-1.2
Light reinforcement 12.35.76.82.6-2.4-2.1
Light reinforcement 22.23.44.02.0-1.9-1.6
Bone: marrow area0.20.41.00.2-0.3-1.0
Bone: maximum diameter0.61.11.51.0-0.9-1.2
Bone: maximum force0.30.50.9-0.50.71.0
Bone: maximum moment0.10.10.2-0.10.30.5
Mean time between licks in bursts0.00.10.20.2-0.1-0.4
Mean num. licks in bursts0.00.00.1-0.2-0.1-0.3
Cd content in liver0.10.10.2-0.10.30.5
Co content in liver0.00.00.1-0.30.20.0
Cu content in liver0.70.91.2-1.11.00.6
Fe content in liver1.51.82.61.4-1.6-0.9
K content in liver0.10.10.2-0.50.3-0.2
Mg content in liver0.60.61.10.5-0.7-1.0
Mn content in liver0.70.81.10.8-0.8-1.0
Na content in liver0.00.00.0-0.20.10.1
Rb content in liver0.20.20.3-0.60.50.1
Se content in liver0.00.00.0-0.20.20.1
Sr content in liver1.41.21.51.0-1.0-1.2
Zn content in liver1.41.52.3-1.51.40.6
Bone: minimum diameter0.10.30.30.5-0.5-0.5
Time in familiar zone, hab. session 10.20.20.30.6-0.4-0.5
Time in novel zone, hab. session 10.30.30.5-0.60.40.7
Total zone transitions, hab. session 10.91.21.31.1-1.1-1.1
Total locomotion distance, hab. session 11.01.51.81.2-1.3-1.1
Locomotion velocity, hab. session 11.42.02.31.3-1.5-1.4
Time in familiar zone, hab. session 20.80.81.21.1-0.9-0.7
Time in novel zone, hab. session 25.05.15.5-2.32.22.3
Total zone transitions, hab. session 22.12.63.11.7-1.8-1.3
Total locomotion distance, hab. session 21.31.71.91.3-1.4-1.2
Locomotion velocity, hab. session 21.21.61.91.3-1.4-1.2
Novel to familiar place preference ratio2.42.62.8-1.61.71.6
Novelty place preference3.84.14.4-2.02.02.1
Time in novel zone, NPP test3.53.84.0-1.92.02.0
Total zone transitions, NPP test1.92.72.81.6-1.7-1.6
Total locomotion distance, NPP test0.91.31.61.1-1.3-1.0
Locomotion velocity, NPP test0.81.11.41.0-1.2-0.9
Intraocular pressure0.50.71.1-0.50.81.1
Delta distance traveled before/after self-admin0.50.50.6-0.80.70.6
Delta ambulatory time before/after self-admin0.70.81.3-1.10.90.6
Parametrial fat weight7.016.418.24.3-4.0-3.9
Pavlov. Cond. lever latency0.10.10.30.1-0.1-0.5
Pavlov. Cond. magazine entry latency0.30.40.5-0.70.70.5
Pavlov. Cond. change in total contacts0.80.81.1-0.80.91.0
Pavlov. Cond. index score0.20.30.3-0.40.50.6
Pavlov. Cond. latency score0.20.20.3-0.30.40.5
Pavlov. Cond. lever contacts0.50.60.9-0.70.70.9
Pavlov. Cond. magazine entry number0.40.50.70.8-0.8-0.4
Pavlov. Cond. intertrial magazine entries0.20.30.50.4-0.4-0.7
Pavlov. Cond. lever-magazine prob. diff.0.30.30.4-0.50.60.6
Pavlov. Cond. response bias0.20.20.2-0.50.50.5
Pavlov. Cond. lever latency1.21.61.71.3-1.3-1.3
Pavlov. Cond. magazine entry latency3.34.04.0-2.02.02.0
Pavlov. Cond. change in total contacts1.62.63.0-1.51.61.7
Pavlov. Cond. index score3.24.34.4-2.12.12.1
Pavlov. Cond. latency score3.24.24.4-2.02.12.0
Pavlov. Cond. lever contacts1.42.02.1-1.41.41.3
Pavlov. Cond. magazine entry number5.36.56.72.5-2.6-2.6
Pavlov. Cond. intertrial magazine entries4.46.77.22.6-2.7-2.4
Pavlov. Cond. lever-magazine prob. diff.3.64.85.0-2.22.22.1
Pavlov. Cond. response bias2.93.94.0-2.02.02.0
Time in closed arm before self-admin3.84.97.01.9-2.0-2.7
Time in closed arm after self-admin3.13.33.81.9-1.8-1.7
Time in open arm before self-admin1.51.61.6-1.31.31.2
Time in open arm after self-admin1.31.43.0-0.70.91.7
Bone: periosteal estimation0.30.60.70.8-0.8-0.9
Bone: periosteal perimeter0.81.41.51.2-1.2-1.2
Bone: post-yield work0.50.81.11.1-0.8-0.7
Progressive ratio test 1 active lever presses2.12.64.5-2.11.80.4
Progressive ratio test 1 breakpoint1.92.34.0-2.01.70.3
Progressive ratio test 1 inactive lever presses0.10.10.2-0.50.2-0.3
Progressive ratio test 2 active lever presses1.71.93.8-1.91.4-0.3
Progressive ratio test 2 breakpoint1.72.03.9-2.01.4-0.2
Progressive ratio test 2 inactive lever presses0.10.20.2-0.50.4-0.3
Incentive Sensitization - Responses0.50.81.6-1.30.7-0.4
Incentive Sensitization - Breakpoint0.70.91.8-1.30.8-0.4
Sum of active levers in priming session hrs 5-60.40.40.7-0.40.60.9
Progressive ratio0.50.71.90.50.01.4
Food seeking constrained by brief footshock2.02.53.9-1.31.42.0
Seeking ratio, punishment vs. effort0.50.71.4-1.20.90.2
Retroperitoneal fat weight6.427.430.65.5-5.3-4.9
Reaction time number correct0.81.52.3-1.51.40.6
Reaction time mean minus median0.82.03.8-1.01.21.9
Reaction time mean minus median AUC0.61.52.9-0.81.01.7
Reaction time num false alarms0.10.10.2-0.40.40.1
Reaction time num false alarms AUC0.00.00.1-0.1-0.1-0.3
Reaction time trials correct on left0.81.52.3-1.51.40.6
Reaction time trials on left0.81.62.4-1.61.40.6
Reaction time mean0.50.92.50.20.31.6
Reaction time mean AUC0.71.23.1-0.10.61.8
Median of all reaction times0.30.51.20.50.01.1
Reaction time omissions0.20.30.60.2-0.5-0.8
Reaction time false alarm rate0.30.40.50.7-0.7-0.6
Reaction time premature initiation rate1.41.92.4-1.31.31.5
Reaction time premature initiations2.34.14.5-2.12.01.9
Std. dev. reaction times0.71.23.3-0.20.61.8
Reaction time trials completed0.81.62.4-1.61.40.6
Reaction time trials AUC0.91.72.5-1.61.40.7
Run reversals in cocaine runway, females1.71.71.91.2-1.4-1.3
Run reversals in cocaine runway, males0.60.60.90.4-0.8-0.9
Latency to leave start box in cocaine runway0.20.20.4-0.40.60.5
Latency to leave start box in cocaine runway, F1.31.51.9-1.41.31.0
Latency to leave start box in cocaine runway, M1.11.02.11.5-0.9-0.5
Std. dev. time between licks in bursts2.12.82.91.7-1.7-1.6
Total sessions with >9 infusions1.01.22.4-1.51.10.0
Short access day 1 total inactive lever presses0.00.00.00.0-0.10.2
Short access day 10 total inactive lever presses0.10.20.30.5-0.50.0
Short access day 1 total infusions0.40.50.8-0.90.4-0.7
Short access day 10 total infusions0.40.50.7-0.80.5-0.8
Short access total infusions1.31.63.1-1.81.3-0.1
Short access day 1 locomotion0.20.20.5-0.70.3-0.3
Short access day 10 total locomotion1.32.43.01.7-1.6-1.3
Short access total locomotion0.40.40.70.6-0.6-0.8
One hour access (0.3 mA shock)0.81.01.7-1.31.0-0.5
Compulsive drug intake0.10.20.30.5-0.40.2
One hour access (shock baseline)0.81.22.2-1.51.1-0.6
Social response proportion0.40.40.6-0.80.7-0.4
Social responses0.10.20.50.1-0.0-0.7
Social time0.20.20.7-0.20.0-0.8
Soleus weight0.20.50.80.9-0.8-0.5
Bone: stiffness2.84.65.1-2.02.32.2
Tibialis anterior weight0.10.50.6-0.80.70.7
Time to tail flick, vehicle, before self-admin0.40.40.7-0.80.60.4
Time to tail flick, vehicle, after self-admin2.22.86.60.8-1.2-2.6
Time to tail flick, test, before self-admin4.84.97.91.8-1.9-2.8
Time to tail flick, test, after self-admin0.90.92.60.3-0.4-1.6
Delta time to tail flick, vehicle, before/after SA2.12.04.20.8-1.1-2.1
Delta time to tail flick, test, before/after SA1.01.11.2-1.11.00.9
Tibia length0.00.10.4-0.00.10.6
Ambulatory time before self-admin1.01.42.71.6-1.1-0.6
Ambulatory time after self-admin0.30.30.60.8-0.5-0.2
Bone: tissue strength0.30.30.4-0.60.60.3
Total heroin consumption1.01.21.6-1.31.10.9
Bone: trabecular number0.20.40.70.9-0.6-0.0
Bone: trabecular spacing0.20.30.70.2-0.3-0.8
Bone: trabecular thickness0.91.12.2-0.70.81.5
Bone: trabecular tissue density0.81.21.4-1.01.01.2
Water consumed over 24 hours0.50.61.20.6-0.7-1.1
Number of responses in last shaping day0.70.70.9-0.60.91.0