Esrra

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain isoform ratio NM_001008511.2 0.04 0.02 8.9e-04 0.03 0.02 0.02 0.03 6.4e-04 3.6e-03 4.9e-03 1.7e-03
2 Brain isoform ratio XM_039108523.1 0.04 0.02 4.2e-04 0.04 0.03 0.03 0.04 2.0e-04 5.7e-04 4.9e-04 3.3e-04
3 Liver gene expression Esrra 0.03 0.02 1.0e-02 0 0 -0 0 1.7e-01 9.4e-02 7.0e-01 3.2e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.10.10.4-0.4-0.2
Area under the delay curve0.10.10.20.2-0.2-0.4
BMI with tail2.27.28.42.9-2.9-2.2
BMI without tail2.85.96.82.6-2.6-2.0
Body weight3.313.715.03.9-3.9-3.4
Weight adjusted by age1.51.72.11.5-1.5-1.0
Bone surface1.62.83.82.0-2.0-0.9
Bone volume0.20.30.50.7-0.70.1
Breakpoint value in progressive ratio session2.02.22.81.7-1.7-1.0
Number of licking bursts0.20.20.30.6-0.6-0.2
Context. condit. distance diff. score0.50.60.7-0.80.80.7
Locomotion velocity, session 10.20.30.40.4-0.4-0.6
Locomotion distance, session 10.40.50.70.6-0.6-0.8
Locomotion velocity, session 22.32.72.81.7-1.7-1.5
Locomotion distance, session 20.60.81.30.7-0.7-1.1
Locomotion velocity, session 30.20.20.3-0.50.50.4
Locomotion distance, session 30.00.00.0-0.10.1-0.0
Stereotopy head waving bouts, day 30.30.40.4-0.70.70.4
Stereotopy head waving duration, day 30.70.80.9-0.90.90.8
Locomotion velocity, session 70.60.70.7-0.80.80.8
Locomotion distance, session 70.10.10.1-0.30.3-0.3
Stereotopy head waving bouts, day 70.30.41.1-0.10.11.0
Stereotopy head waving duration, day 70.70.91.31.1-1.1-0.2
Locomotion velocity, session 81.82.12.21.4-1.4-1.5
Locomotion distance, session 80.00.00.10.0-0.00.3
Degree of sensitization distance0.00.00.0-0.10.1-0.0
Degree of sensitization stereotypy0.30.30.40.6-0.60.4
Conditioned locomotion1.82.12.31.5-1.5-1.2
Cocaine response after cond. corrected0.91.01.5-1.21.20.3
Cocaine response after cond. not corrected0.80.81.2-1.11.10.2
Cocaine response before conditioning0.10.10.20.4-0.4-0.3
Saline control response4.66.06.42.5-2.5-2.3
Bone: connectivity density1.01.61.81.3-1.3-1.1
Bone: cortical apparent density0.40.50.50.7-0.7-0.7
Bone: cortical area0.40.50.80.9-0.9-0.2
Bone: cortical porosity0.10.20.20.5-0.5-0.1
Bone: cortical porosity0.70.81.01.0-1.0-0.6
Bone: cortical thickness3.25.25.42.3-2.3-2.2
Bone: cortical thickness1.01.22.40.8-0.8-1.5
Bone: cortical tissue density0.50.60.60.8-0.8-0.8
Condit. Reinf. active minus inactive responses0.70.81.01.0-1.0-0.4
Condit. Reinf. active-inactive response ratio0.30.30.50.7-0.7-0.2
Condit. Reinf. active responses0.10.10.20.4-0.40.1
Condit. Reinf. inactive responses0.30.40.5-0.60.60.7
Incentive salience index mean0.70.91.21.1-1.1-0.5
Condit. Reinf. lever presses0.20.30.40.6-0.6-0.2
Condit. Reinf. active minus inactive responses0.50.61.4-0.50.51.2
Condit. Reinf. active-inactive response ratio2.22.34.2-1.11.12.0
Condit. Reinf. active responses0.10.10.10.3-0.30.3
Condit. Reinf. inactive responses1.21.51.51.2-1.2-1.2
Condit. Reinf. lever presses0.71.01.51.2-1.2-0.3
Condit. Reinf. lever reinforcers received0.10.20.20.5-0.50.2
Conditioned reinforcement - actives1.31.31.9-1.01.01.4
Conditioned reinforcement - inactives7.28.19.1-2.82.83.0
Conditioned locomotion11.013.214.5-3.83.83.3
Patch foraging indifference point 0 sec0.00.00.1-0.00.00.3
Patch foraging indifference point AUC3.13.64.82.2-2.2-1.1
Delay disc. indifference point, 0s delay0.10.10.2-0.00.0-0.4
Delay disc. indifference point, 16s delay0.80.81.0-0.80.81.0
Delay disc. indifference point, 2s delay0.00.00.0-0.20.20.1
Delay disc. indifference point, 24s delay0.20.20.50.3-0.3-0.7
Delay disc. indifference point, 4s delay0.40.40.70.6-0.6-0.8
Delay disc. indifference point, 8s delay0.20.20.50.3-0.3-0.7
Indifference point function ln k5.27.39.7-3.13.11.6
Indifference point function log k5.27.39.7-3.13.11.6
Patch foraging total patch changes 0 sec0.00.00.00.1-0.1-0.0
Patch foraging total patch changes 12 sec3.95.05.92.4-2.4-1.8
Patch foraging total patch changes 18 sec0.70.91.31.1-1.1-0.4
Patch foraging total patch changes 24 sec3.24.04.92.2-2.2-1.5
Patch foraging total patch changes 6 sec1.11.72.01.4-1.4-1.1
Patch foraging time to switch 0 sec0.50.81.01.0-1.0-0.5
Patch foraging water rate 0 sec2.54.04.8-2.22.21.6
Patch foraging water rate 12 sec3.75.67.2-2.72.71.5
Patch foraging water rate 18 sec1.72.33.3-1.81.80.7
Patch foraging water rate 24 sec2.73.85.1-2.32.31.1
Patch foraging water rate 6 sec1.92.73.8-2.02.00.7
Seeking ratio, delayed vs. immediate footshock0.00.00.0-0.10.10.1
Distance traveled before self-admin0.20.20.30.5-0.50.1
Distance traveled after self-admin0.00.00.00.2-0.20.1
Extensor digitorum longus weight6.826.830.55.5-5.5-4.4
Bone: elastic displacement0.30.40.5-0.70.7-0.1
Bone: elastic work1.72.23.11.3-1.3-1.8
Bone: endosteal estimation1.12.33.0-1.41.41.7
Bone: endosteal perimeter2.04.16.3-1.71.72.5
Epididymis fat weight2.55.75.9-2.42.42.3
Delta time in closed arm before/after self-admin0.50.51.6-0.10.1-1.2
Delta time in open arm before/after self-admin0.30.30.40.6-0.60.6
Diff in mean of infusions in LGA sessions0.40.50.60.8-0.8-0.5
Delay discount exponential model param0.10.10.2-0.30.30.5
Extinction: sum of active levers before priming4.64.65.82.4-2.4-1.5
Active lever presses in extinction session 61.51.52.01.4-1.4-0.6
Bone: final force2.03.23.92.0-2.0-1.3
Bone: final moment1.72.83.41.9-1.9-1.2
Food consumed during 24 hour testing period0.00.00.10.1-0.10.4
Glucose2.94.45.2-2.32.31.7
Heart weight3.95.57.4-2.72.71.3
Delay discount hyperbolic model param0.20.20.2-0.40.40.5
Intermittent access intake day 1-15 change0.90.91.7-0.70.71.3
Intermittent access intake escalation0.80.81.5-0.70.71.2
Intermittent access intake escalation 20.40.40.9-0.40.41.0
Intermitt. access day 1 inactive lever presses2.62.83.0-1.61.61.7
Intermitt. access day 15 inactive lever presses4.65.16.0-2.12.12.5
Intermitt. access escalation Index2.01.82.5-1.61.60.6
Intermittent access day 1 total infusions7.18.38.9-3.03.02.7
Intermittent access day 15 total infusions11.212.612.7-3.53.53.6
Intermittent access terminal intake (last 3 days)8.39.110.6-2.92.93.2
Intermittent access total infusions7.68.48.7-2.92.92.9
Intermittent access day 1 locomotion4.34.55.4-2.32.31.6
Intermittent access day 15 total locomotion6.97.47.5-2.72.72.7
Intermittent access total locomotion9.010.310.5-3.23.23.2
Intermittent access standard deviation1.71.82.3-1.31.31.5
Left kidney weight1.13.13.6-1.91.91.4
Right kidney weight0.51.42.1-1.01.01.5
Cocaine induced anxiety0.10.10.20.2-0.20.4
Post-drug Anxiety0.80.91.31.1-1.1-0.2
Baseline Anxiety2.12.32.31.5-1.5-1.5
Tail length1.54.64.72.2-2.2-2.1
Length with tail1.96.97.12.7-2.7-2.6
Length without tail0.81.71.91.2-1.2-1.4
Times rat made contact with spout1.31.51.71.3-1.3-1.1
Lifetime Intake6.27.07.4-2.72.72.5
Liver weight, left0.00.00.1-0.00.00.3
Liver weight, right0.10.20.20.5-0.5-0.5
Locomotor activity0.71.21.7-1.31.30.3
Locomotor testing distance0.81.31.9-1.41.40.1
Locomotor testing rearing0.71.11.6-1.31.30.4
Locomotion in novel chamber5.97.38.8-2.62.63.0
Locomotion in novel chamber post-restriction3.44.14.2-2.12.11.9
Fecal boli incidents, locomotor time 10.20.20.70.0-0.00.8
Change in fecal boli incidents, locomotor task0.40.30.90.2-0.2-1.0
Time >=10cm from walls, locomotor time 11.71.73.1-1.01.01.8
Bouts of movement, locomotor time 10.80.91.11.0-1.0-0.7
Total resting periods, locomotor time 10.30.30.40.7-0.7-0.4
Rest time, locomotor task time 10.90.91.2-0.90.91.1
Distance moved, locomotor task time 10.30.30.40.6-0.6-0.4
Vertical activity count, locomotor time 10.80.80.9-0.90.90.9
Time >=10cm from walls, locomotor time 20.30.30.50.4-0.40.7
Bouts of movement, locomotor time 20.20.20.30.5-0.5-0.5
Total resting periods, locomotor time 20.00.00.10.2-0.2-0.3
Rest time, locomotor task time 22.73.03.5-1.91.91.5
Distance moved, locomotor task time 21.61.92.31.5-1.5-1.0
Vertical activity count, locomotor time 20.20.20.40.3-0.3-0.6
Light reinforcement 10.00.00.10.1-0.10.3
Light reinforcement 23.04.15.4-1.91.92.3
Bone: marrow area1.12.32.9-1.41.41.7
Bone: maximum diameter0.10.20.60.3-0.30.8
Bone: maximum force1.52.53.41.9-1.9-0.9
Bone: maximum moment1.32.23.01.7-1.7-0.8
Mean time between licks in bursts1.31.83.61.0-1.0-1.9
Mean num. licks in bursts0.00.00.0-0.10.1-0.2
Cd content in liver0.91.02.3-0.60.61.5
Co content in liver0.10.10.1-0.30.3-0.2
Cu content in liver0.20.30.30.6-0.6-0.4
Fe content in liver0.10.20.30.5-0.50.1
K content in liver1.61.61.91.4-1.4-1.0
Mg content in liver0.10.10.10.3-0.3-0.0
Mn content in liver1.41.52.21.5-1.5-0.5
Na content in liver0.90.91.31.1-1.1-0.4
Rb content in liver1.11.41.6-1.31.31.0
Se content in liver0.60.81.9-0.50.51.4
Sr content in liver2.42.22.61.6-1.6-1.2
Zn content in liver0.60.70.80.9-0.9-0.7
Bone: minimum diameter0.91.72.5-1.21.21.6
Time in familiar zone, hab. session 10.10.10.1-0.30.30.3
Time in novel zone, hab. session 10.10.10.1-0.30.3-0.3
Total zone transitions, hab. session 11.11.52.11.5-1.5-0.6
Total locomotion distance, hab. session 10.10.20.5-0.00.00.7
Locomotion velocity, hab. session 10.10.20.20.5-0.50.3
Time in familiar zone, hab. session 20.50.61.30.4-0.4-1.2
Time in novel zone, hab. session 20.10.10.2-0.10.10.5
Total zone transitions, hab. session 21.31.71.91.4-1.4-1.1
Total locomotion distance, hab. session 20.10.20.20.5-0.5-0.2
Locomotion velocity, hab. session 20.00.00.10.2-0.20.2
Novel to familiar place preference ratio0.00.00.00.2-0.20.1
Novelty place preference0.10.10.1-0.20.20.4
Time in novel zone, NPP test0.00.00.1-0.20.20.3
Total zone transitions, NPP test2.13.03.71.9-1.9-1.3
Total locomotion distance, NPP test0.10.10.20.5-0.5-0.2
Locomotion velocity, NPP test0.10.20.30.5-0.5-0.1
Intraocular pressure1.82.53.0-1.51.51.7
Delta distance traveled before/after self-admin0.00.00.1-0.00.0-0.4
Delta ambulatory time before/after self-admin0.10.20.30.2-0.2-0.6
Parametrial fat weight1.93.63.8-1.91.91.8
Pavlov. Cond. lever latency0.20.30.3-0.60.60.4
Pavlov. Cond. magazine entry latency0.20.30.40.7-0.7-0.1
Pavlov. Cond. change in total contacts0.30.30.5-0.40.40.7
Pavlov. Cond. index score0.10.20.30.5-0.5-0.1
Pavlov. Cond. latency score0.10.10.20.5-0.5-0.1
Pavlov. Cond. lever contacts0.10.10.10.3-0.3-0.3
Pavlov. Cond. magazine entry number0.10.20.3-0.50.5-0.1
Pavlov. Cond. intertrial magazine entries0.91.11.2-1.11.11.0
Pavlov. Cond. lever-magazine prob. diff.0.30.40.60.8-0.8-0.2
Pavlov. Cond. response bias0.10.10.10.4-0.40.1
Pavlov. Cond. lever latency0.10.10.1-0.40.4-0.1
Pavlov. Cond. magazine entry latency2.73.13.51.9-1.9-1.5
Pavlov. Cond. change in total contacts0.30.50.60.8-0.80.3
Pavlov. Cond. index score0.70.91.31.1-1.1-0.5
Pavlov. Cond. latency score0.60.71.01.0-1.0-0.4
Pavlov. Cond. lever contacts0.00.10.10.3-0.30.1
Pavlov. Cond. magazine entry number3.74.65.6-2.42.41.6
Pavlov. Cond. intertrial magazine entries0.50.60.9-0.70.71.0
Pavlov. Cond. lever-magazine prob. diff.1.11.41.81.4-1.4-0.7
Pavlov. Cond. response bias0.60.81.01.0-1.0-0.5
Time in closed arm before self-admin0.10.10.30.2-0.20.5
Time in closed arm after self-admin0.10.10.1-0.40.4-0.2
Time in open arm before self-admin0.30.40.9-0.30.3-0.9
Time in open arm after self-admin0.00.00.00.0-0.0-0.1
Bone: periosteal estimation0.20.41.2-0.30.31.1
Bone: periosteal perimeter0.10.20.50.1-0.10.7
Bone: post-yield work0.60.82.2-0.30.31.5
Progressive ratio test 1 active lever presses4.14.34.5-2.12.12.0
Progressive ratio test 1 breakpoint3.43.53.5-1.91.91.9
Progressive ratio test 1 inactive lever presses1.31.51.9-1.41.40.7
Progressive ratio test 2 active lever presses6.67.18.1-2.62.62.9
Progressive ratio test 2 breakpoint7.88.89.1-2.92.93.0
Progressive ratio test 2 inactive lever presses11.012.713.1-3.53.53.6
Incentive Sensitization - Responses1.01.11.7-0.90.91.3
Incentive Sensitization - Breakpoint1.41.42.3-1.01.01.5
Sum of active levers in priming session hrs 5-60.30.30.30.6-0.60.4
Progressive ratio2.02.33.11.8-1.8-0.9
Food seeking constrained by brief footshock0.40.51.10.4-0.4-1.1
Seeking ratio, punishment vs. effort1.31.62.4-1.61.60.1
Retroperitoneal fat weight5.919.521.7-4.74.73.9
Reaction time number correct0.40.50.50.7-0.7-0.7
Reaction time mean minus median1.62.13.01.7-1.7-0.6
Reaction time mean minus median AUC1.31.62.31.5-1.5-0.6
Reaction time num false alarms0.40.50.6-0.70.7-0.8
Reaction time num false alarms AUC0.40.51.6-0.00.0-1.3
Reaction time trials correct on left0.40.50.50.7-0.7-0.7
Reaction time trials on left0.40.60.60.8-0.8-0.8
Reaction time mean0.10.20.5-0.10.10.7
Reaction time mean AUC0.20.20.6-0.10.10.8
Median of all reaction times0.30.40.8-0.50.50.9
Reaction time omissions0.40.50.50.7-0.7-0.7
Reaction time false alarm rate0.30.40.4-0.60.6-0.6
Reaction time premature initiation rate4.35.77.12.3-2.3-2.7
Reaction time premature initiations5.98.49.32.8-2.8-3.1
Std. dev. reaction times0.20.30.40.7-0.70.1
Reaction time trials completed0.40.60.60.8-0.8-0.8
Reaction time trials AUC0.30.40.50.6-0.6-0.7
Run reversals in cocaine runway, females0.90.92.10.6-0.6-1.5
Run reversals in cocaine runway, males0.20.20.20.5-0.50.0
Latency to leave start box in cocaine runway0.10.10.3-0.10.10.5
Latency to leave start box in cocaine runway, F0.00.00.10.1-0.10.3
Latency to leave start box in cocaine runway, M0.10.10.1-0.20.20.3
Std. dev. time between licks in bursts0.30.31.0-0.10.1-1.0
Total sessions with >9 infusions2.02.22.5-1.61.61.2
Short access day 1 total inactive lever presses5.25.86.9-2.62.61.9
Short access day 10 total inactive lever presses2.73.04.0-2.02.01.0
Short access day 1 total infusions3.84.04.7-2.22.21.6
Short access day 10 total infusions2.93.23.6-1.91.91.6
Short access total infusions2.22.43.0-1.71.71.2
Short access day 1 locomotion2.83.03.7-1.91.91.2
Short access day 10 total locomotion1.92.12.5-1.61.61.1
Short access total locomotion1.91.92.5-1.61.60.9
One hour access (0.3 mA shock)12.514.615.4-3.93.93.6
Compulsive drug intake4.84.87.01.9-1.9-2.6
One hour access (shock baseline)14.116.418.2-3.93.94.3
Social response proportion0.70.81.01.0-1.0-0.6
Social responses1.01.21.51.2-1.2-0.8
Social time0.71.01.11.0-1.0-0.9
Soleus weight3.08.89.7-3.13.12.6
Bone: stiffness1.21.92.71.6-1.6-0.5
Tibialis anterior weight9.833.639.36.3-6.3-4.7
Time to tail flick, vehicle, before self-admin0.30.30.50.7-0.7-0.3
Time to tail flick, vehicle, after self-admin3.73.93.92.0-2.0-2.0
Time to tail flick, test, before self-admin0.30.30.4-0.60.60.1
Time to tail flick, test, after self-admin0.00.00.10.2-0.2-0.2
Delta time to tail flick, vehicle, before/after SA1.41.41.61.1-1.1-1.3
Delta time to tail flick, test, before/after SA0.70.60.80.9-0.9-0.5
Tibia length0.20.60.90.9-0.90.3
Ambulatory time before self-admin0.20.20.30.3-0.30.6
Ambulatory time after self-admin0.50.51.1-0.50.51.0
Bone: tissue strength0.10.10.2-0.30.30.5
Total heroin consumption4.45.25.72.4-2.4-2.1
Bone: trabecular number0.00.00.10.2-0.20.2
Bone: trabecular spacing0.10.10.20.0-0.0-0.5
Bone: trabecular thickness1.11.31.4-1.21.21.1
Bone: trabecular tissue density3.14.44.7-2.22.21.9
Water consumed over 24 hours1.21.51.61.3-1.3-1.1
Number of responses in last shaping day1.31.31.9-1.41.40.4