Emc7

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain mRNA stability Emc7 0.03 0.02 1.1e-03 0.04 0.03 0.04 0.04 9.5e-05 4.8e-04 1.3e-04 5.4e-05
2 Brain gene expression Emc7 0.04 0.04 2.5e-03 0.02 0.03 0.02 0.02 5.0e-03 1.3e-03 1.2e-02 5.1e-03
3 IL gene expression Emc7 0.13 0.11 6.3e-03 0.08 0.08 0.09 0.09 7.1e-03 6.9e-03 3.7e-03 3.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.40.81.0-1.00.51.0
Area under the delay curve0.30.40.50.3-0.7-0.7
BMI with tail0.51.63.5-1.11.90.4
BMI without tail0.61.83.6-1.31.90.5
Body weight0.10.30.4-0.70.50.4
Weight adjusted by age0.40.50.90.7-0.4-1.0
Bone surface0.61.11.3-1.20.81.2
Bone volume1.11.92.3-1.51.11.5
Breakpoint value in progressive ratio session0.20.20.30.4-0.6-0.3
Number of licking bursts0.30.41.0-0.50.21.0
Context. condit. distance diff. score2.63.24.0-1.91.42.0
Locomotion velocity, session 10.80.91.01.0-1.0-0.9
Locomotion distance, session 10.20.20.60.20.0-0.7
Locomotion velocity, session 20.10.10.30.3-0.1-0.5
Locomotion distance, session 20.20.30.90.20.1-0.9
Locomotion velocity, session 30.30.40.90.40.1-1.0
Locomotion distance, session 30.00.00.00.10.0-0.2
Stereotopy head waving bouts, day 32.12.53.2-1.81.61.3
Stereotopy head waving duration, day 32.83.34.2-2.01.91.5
Locomotion velocity, session 74.95.46.2-2.52.32.2
Locomotion distance, session 72.93.74.5-2.11.52.1
Stereotopy head waving bouts, day 71.11.21.81.0-1.3-0.8
Stereotopy head waving duration, day 70.91.01.51.0-1.2-0.7
Locomotion velocity, session 80.60.70.8-0.90.90.7
Locomotion distance, session 81.32.02.6-1.61.41.1
Degree of sensitization distance2.72.83.7-1.81.21.9
Degree of sensitization stereotypy3.33.55.01.9-2.2-1.4
Conditioned locomotion2.42.83.81.8-1.1-1.9
Cocaine response after cond. corrected0.80.91.90.8-0.4-1.4
Cocaine response after cond. not corrected0.40.51.00.6-0.4-1.0
Cocaine response before conditioning0.20.20.4-0.40.00.6
Saline control response0.00.00.00.0-0.10.1
Bone: connectivity density0.50.71.0-1.00.70.9
Bone: cortical apparent density2.53.55.62.0-2.4-0.8
Bone: cortical area0.60.91.4-0.91.20.7
Bone: cortical porosity0.80.81.80.80.1-1.3
Bone: cortical porosity0.70.71.60.70.2-1.3
Bone: cortical thickness0.00.10.10.1-0.30.3
Bone: cortical thickness1.72.02.41.5-1.3-1.5
Bone: cortical tissue density3.04.16.42.2-2.5-0.9
Condit. Reinf. active minus inactive responses0.91.02.4-0.80.21.5
Condit. Reinf. active-inactive response ratio3.13.44.7-1.81.52.2
Condit. Reinf. active responses0.50.61.3-0.2-0.71.1
Condit. Reinf. inactive responses1.82.23.81.5-2.0-0.8
Incentive salience index mean1.51.93.9-1.20.52.0
Condit. Reinf. lever presses0.91.32.7-1.10.21.7
Condit. Reinf. active minus inactive responses0.50.70.8-0.90.80.8
Condit. Reinf. active-inactive response ratio0.81.01.3-1.01.20.8
Condit. Reinf. active responses0.81.22.1-1.10.61.5
Condit. Reinf. inactive responses1.41.93.9-1.20.42.0
Condit. Reinf. lever presses0.20.20.4-0.0-0.50.6
Condit. Reinf. lever reinforcers received0.40.61.3-0.70.11.1
Conditioned reinforcement - actives0.71.22.11.1-1.5-0.6
Conditioned reinforcement - inactives1.01.51.91.3-1.4-1.0
Conditioned locomotion0.10.10.30.1-0.5-0.2
Patch foraging indifference point 0 sec1.63.03.5-1.71.61.9
Patch foraging indifference point AUC1.21.72.21.5-1.5-0.8
Delay disc. indifference point, 0s delay1.61.82.21.3-1.3-1.5
Delay disc. indifference point, 16s delay0.10.10.3-0.10.4-0.5
Delay disc. indifference point, 2s delay0.10.10.3-0.50.00.0
Delay disc. indifference point, 24s delay0.40.50.70.7-0.8-0.6
Delay disc. indifference point, 4s delay1.31.41.51.2-1.2-1.1
Delay disc. indifference point, 8s delay0.10.10.1-0.2-0.3-0.2
Indifference point function ln k0.81.32.3-1.21.50.4
Indifference point function log k0.81.32.3-1.21.50.4
Patch foraging total patch changes 0 sec1.32.53.3-1.51.41.8
Patch foraging total patch changes 12 sec0.81.01.2-1.00.91.1
Patch foraging total patch changes 18 sec0.71.11.81.2-1.3-0.3
Patch foraging total patch changes 24 sec0.00.10.10.2-0.30.2
Patch foraging total patch changes 6 sec0.81.32.4-0.80.81.5
Patch foraging time to switch 0 sec0.10.20.3-0.50.50.3
Patch foraging water rate 0 sec1.02.22.6-1.51.31.6
Patch foraging water rate 12 sec0.00.00.10.3-0.00.0
Patch foraging water rate 18 sec0.20.30.5-0.50.70.5
Patch foraging water rate 24 sec0.50.81.4-0.70.61.2
Patch foraging water rate 6 sec0.00.00.00.1-0.1-0.1
Seeking ratio, delayed vs. immediate footshock0.60.71.1-0.70.71.0
Distance traveled before self-admin1.11.53.31.0-1.8-0.4
Distance traveled after self-admin0.20.20.4-0.40.10.6
Extensor digitorum longus weight0.31.11.61.3-1.0-0.9
Bone: elastic displacement0.10.10.20.0-0.40.5
Bone: elastic work0.00.10.2-0.10.10.4
Bone: endosteal estimation0.71.63.0-1.21.70.6
Bone: endosteal perimeter0.51.12.5-0.91.6-0.0
Epididymis fat weight1.55.08.0-2.32.81.4
Delta time in closed arm before/after self-admin0.60.60.7-0.70.90.6
Delta time in open arm before/after self-admin0.10.10.20.2-0.4-0.2
Diff in mean of infusions in LGA sessions2.43.03.6-1.81.91.4
Delay discount exponential model param0.20.20.3-0.10.60.4
Extinction: sum of active levers before priming0.10.20.20.5-0.5-0.1
Active lever presses in extinction session 60.70.71.20.8-0.4-1.1
Bone: final force1.72.73.6-1.61.91.3
Bone: final moment1.62.53.6-1.51.91.3
Food consumed during 24 hour testing period0.00.00.1-0.0-0.00.3
Glucose0.71.22.0-1.21.40.3
Heart weight0.30.51.00.30.6-1.0
Delay discount hyperbolic model param0.10.20.3-0.00.60.4
Intermittent access intake day 1-15 change0.00.10.20.3-0.5-0.1
Intermittent access intake escalation0.10.30.50.5-0.7-0.2
Intermittent access intake escalation 20.20.20.40.4-0.6-0.1
Intermitt. access day 1 inactive lever presses0.00.00.1-0.10.1-0.3
Intermitt. access day 15 inactive lever presses1.22.42.91.5-1.7-1.4
Intermitt. access escalation Index0.81.21.5-1.21.20.7
Intermittent access day 1 total infusions0.71.21.70.9-1.3-1.0
Intermittent access day 15 total infusions0.81.21.71.0-1.3-1.0
Intermittent access terminal intake (last 3 days)0.20.20.50.3-0.7-0.5
Intermittent access total infusions0.50.60.80.6-0.9-0.8
Intermittent access day 1 locomotion0.30.40.80.4-0.9-0.4
Intermittent access day 15 total locomotion0.10.20.50.2-0.7-0.2
Intermittent access total locomotion1.92.33.61.4-1.9-1.1
Intermittent access standard deviation0.20.30.70.4-0.8-0.3
Left kidney weight0.94.25.6-2.42.31.4
Right kidney weight1.35.97.7-2.82.52.0
Cocaine induced anxiety0.71.01.7-1.11.30.5
Post-drug Anxiety4.14.45.8-2.41.92.0
Baseline Anxiety1.21.41.8-1.30.91.3
Tail length0.41.51.81.3-1.2-1.2
Length with tail0.10.51.40.4-1.2-0.2
Length without tail0.10.30.90.1-0.90.2
Times rat made contact with spout1.21.42.1-1.11.41.0
Lifetime Intake0.30.40.70.4-0.8-0.5
Liver weight, left2.13.53.9-2.01.81.8
Liver weight, right2.84.85.9-2.31.82.4
Locomotor activity0.40.71.11.1-0.2-0.9
Locomotor testing distance0.10.20.50.00.70.0
Locomotor testing rearing0.00.00.00.00.1-0.0
Locomotion in novel chamber0.10.20.4-0.40.60.1
Locomotion in novel chamber post-restriction0.50.81.21.1-0.8-0.8
Fecal boli incidents, locomotor time 11.11.51.61.2-1.3-1.3
Change in fecal boli incidents, locomotor task1.11.12.3-0.91.50.3
Time >=10cm from walls, locomotor time 10.20.20.50.4-0.2-0.7
Bouts of movement, locomotor time 17.48.410.73.2-3.3-2.1
Total resting periods, locomotor time 16.77.59.23.0-3.0-2.1
Rest time, locomotor task time 11.11.31.41.2-1.1-1.1
Distance moved, locomotor task time 12.13.13.9-2.01.41.9
Vertical activity count, locomotor time 11.74.24.7-2.21.82.2
Time >=10cm from walls, locomotor time 21.92.84.0-1.90.82.0
Bouts of movement, locomotor time 20.20.30.70.5-0.80.1
Total resting periods, locomotor time 20.30.51.00.7-1.0-0.2
Rest time, locomotor task time 23.13.95.42.3-1.2-2.2
Distance moved, locomotor task time 25.26.29.3-2.71.53.0
Vertical activity count, locomotor time 25.67.711.8-3.01.63.4
Light reinforcement 10.10.30.8-0.2-0.40.9
Light reinforcement 20.20.30.60.4-0.80.0
Bone: marrow area0.71.52.8-1.11.70.6
Bone: maximum diameter0.81.53.1-1.11.80.4
Bone: maximum force1.93.44.5-1.82.11.5
Bone: maximum moment1.73.04.2-1.72.01.4
Mean time between licks in bursts1.23.03.81.9-1.5-1.8
Mean num. licks in bursts0.10.20.4-0.20.6-0.3
Cd content in liver0.10.20.3-0.30.50.3
Co content in liver1.31.52.61.1-0.7-1.6
Cu content in liver2.83.33.71.9-1.6-1.9
Fe content in liver0.20.20.3-0.40.50.3
K content in liver0.90.81.40.9-0.6-1.2
Mg content in liver2.62.62.91.7-1.6-1.6
Mn content in liver0.91.01.21.0-1.1-0.9
Na content in liver2.32.43.2-1.81.51.3
Rb content in liver2.32.75.21.5-2.3-0.9
Se content in liver2.32.73.91.7-2.0-1.0
Sr content in liver0.50.40.7-0.60.80.4
Zn content in liver1.82.02.31.5-1.3-1.4
Bone: minimum diameter2.13.86.1-2.02.51.1
Time in familiar zone, hab. session 11.00.91.21.1-0.6-1.1
Time in novel zone, hab. session 11.51.52.1-1.41.21.1
Total zone transitions, hab. session 10.20.20.60.20.0-0.8
Total locomotion distance, hab. session 10.10.20.3-0.10.4-0.6
Locomotion velocity, hab. session 10.10.10.30.20.1-0.5
Time in familiar zone, hab. session 20.10.10.20.3-0.40.1
Time in novel zone, hab. session 20.40.50.8-0.70.90.4
Total zone transitions, hab. session 20.91.22.11.0-0.7-1.4
Total locomotion distance, hab. session 20.71.01.71.0-0.6-1.3
Locomotion velocity, hab. session 20.70.91.60.9-0.5-1.3
Novel to familiar place preference ratio2.22.44.1-1.62.00.8
Novelty place preference2.32.54.3-1.62.10.7
Time in novel zone, NPP test1.81.93.0-1.51.70.8
Total zone transitions, NPP test4.46.47.12.7-2.4-2.5
Total locomotion distance, NPP test2.53.44.01.9-1.6-2.0
Locomotion velocity, NPP test2.73.74.92.1-1.4-2.2
Intraocular pressure0.30.40.7-0.80.80.1
Delta distance traveled before/after self-admin0.30.40.9-0.40.90.2
Delta ambulatory time before/after self-admin1.11.42.2-1.11.50.9
Parametrial fat weight0.20.40.90.3-0.2-1.0
Pavlov. Cond. lever latency1.72.22.61.6-1.2-1.6
Pavlov. Cond. magazine entry latency5.26.78.2-2.92.02.8
Pavlov. Cond. change in total contacts3.63.84.8-2.11.52.2
Pavlov. Cond. index score4.05.16.3-2.51.72.5
Pavlov. Cond. latency score3.64.65.6-2.41.72.3
Pavlov. Cond. lever contacts2.12.42.9-1.71.31.7
Pavlov. Cond. magazine entry number6.27.89.43.1-2.3-3.0
Pavlov. Cond. intertrial magazine entries0.40.50.70.8-0.6-0.7
Pavlov. Cond. lever-magazine prob. diff.3.74.65.7-2.31.62.4
Pavlov. Cond. response bias3.13.85.0-2.11.42.2
Pavlov. Cond. lever latency0.10.10.20.3-0.4-0.3
Pavlov. Cond. magazine entry latency0.10.10.10.2-0.30.3
Pavlov. Cond. change in total contacts0.20.40.6-0.60.50.8
Pavlov. Cond. index score0.20.30.6-0.50.40.8
Pavlov. Cond. latency score0.20.20.4-0.40.30.7
Pavlov. Cond. lever contacts0.30.40.5-0.60.70.5
Pavlov. Cond. magazine entry number0.20.20.60.20.1-0.8
Pavlov. Cond. intertrial magazine entries0.40.61.2-0.80.11.1
Pavlov. Cond. lever-magazine prob. diff.0.30.30.6-0.50.40.8
Pavlov. Cond. response bias0.20.20.3-0.40.40.6
Time in closed arm before self-admin0.71.01.6-1.00.41.3
Time in closed arm after self-admin0.60.60.9-0.90.50.9
Time in open arm before self-admin0.10.10.30.20.0-0.5
Time in open arm after self-admin0.10.10.1-0.30.3-0.2
Bone: periosteal estimation0.71.42.7-1.11.60.6
Bone: periosteal perimeter0.71.33.1-0.81.8-0.2
Bone: post-yield work0.20.30.40.20.7-0.6
Progressive ratio test 1 active lever presses0.20.20.70.2-0.80.0
Progressive ratio test 1 breakpoint0.20.30.70.3-0.90.0
Progressive ratio test 1 inactive lever presses0.30.40.90.4-1.0-0.3
Progressive ratio test 2 active lever presses0.10.10.2-0.5-0.00.3
Progressive ratio test 2 breakpoint0.10.10.3-0.5-0.00.3
Progressive ratio test 2 inactive lever presses0.00.10.2-0.1-0.40.0
Incentive Sensitization - Responses0.00.10.1-0.30.2-0.1
Incentive Sensitization - Breakpoint0.10.10.2-0.50.20.0
Sum of active levers in priming session hrs 5-62.72.53.71.9-1.8-0.7
Progressive ratio1.42.22.91.7-1.4-1.3
Food seeking constrained by brief footshock0.00.00.00.0-0.10.1
Seeking ratio, punishment vs. effort0.60.81.2-1.10.80.8
Retroperitoneal fat weight6.829.234.7-5.95.84.4
Reaction time number correct0.40.90.9-0.90.91.0
Reaction time mean minus median0.00.00.0-0.2-0.0-0.1
Reaction time mean minus median AUC0.30.71.1-0.91.00.4
Reaction time num false alarms0.30.40.80.10.6-0.9
Reaction time num false alarms AUC0.20.40.6-0.20.8-0.7
Reaction time trials correct on left0.40.90.9-0.90.91.0
Reaction time trials on left0.50.90.9-1.00.91.0
Reaction time mean0.50.81.0-1.00.60.9
Reaction time mean AUC0.40.70.9-1.00.70.8
Median of all reaction times0.60.91.1-1.00.71.0
Reaction time omissions0.10.10.1-0.40.10.3
Reaction time false alarm rate0.50.71.80.50.2-1.4
Reaction time premature initiation rate1.11.51.8-1.21.11.3
Reaction time premature initiations1.83.23.9-1.81.52.0
Std. dev. reaction times0.40.71.0-1.00.90.4
Reaction time trials completed0.50.90.9-1.00.91.0
Reaction time trials AUC0.61.21.5-1.10.91.2
Run reversals in cocaine runway, females3.13.13.8-2.01.91.3
Run reversals in cocaine runway, males0.70.71.01.0-0.8-0.6
Latency to leave start box in cocaine runway0.70.80.90.9-1.0-0.8
Latency to leave start box in cocaine runway, F1.21.41.71.1-1.3-1.1
Latency to leave start box in cocaine runway, M0.50.40.8-0.50.90.5
Std. dev. time between licks in bursts0.10.20.3-0.40.50.2
Total sessions with >9 infusions0.30.30.80.4-0.9-0.2
Short access day 1 total inactive lever presses0.91.11.41.2-0.9-1.1
Short access day 10 total inactive lever presses0.10.30.50.5-0.3-0.7
Short access day 1 total infusions0.50.61.50.5-1.20.1
Short access day 10 total infusions0.40.61.00.6-1.0-0.6
Short access total infusions0.30.41.00.4-1.0-0.1
Short access day 1 locomotion0.20.20.3-0.1-0.50.5
Short access day 10 total locomotion1.63.03.31.8-1.7-1.7
Short access total locomotion0.20.30.40.4-0.6-0.5
One hour access (0.3 mA shock)0.20.20.40.3-0.4-0.6
Compulsive drug intake0.40.51.10.50.0-1.0
One hour access (shock baseline)0.10.10.3-0.50.10.3
Social response proportion3.54.05.6-2.31.02.4
Social responses2.53.25.1-2.00.92.3
Social time0.60.81.10.8-0.8-1.0
Soleus weight0.30.91.9-0.81.4-0.0
Bone: stiffness2.84.56.8-2.12.61.5
Tibialis anterior weight0.10.30.40.6-0.5-0.3
Time to tail flick, vehicle, before self-admin0.30.30.5-0.60.20.7
Time to tail flick, vehicle, after self-admin2.33.03.6-1.91.91.4
Time to tail flick, test, before self-admin0.20.20.4-0.40.20.6
Time to tail flick, test, after self-admin0.20.20.30.4-0.6-0.2
Delta time to tail flick, vehicle, before/after SA0.90.81.2-0.91.10.7
Delta time to tail flick, test, before/after SA0.10.10.10.3-0.2-0.3
Tibia length0.10.10.20.5-0.4-0.3
Ambulatory time before self-admin1.31.93.81.3-1.9-0.5
Ambulatory time after self-admin0.20.20.5-0.2-0.10.7
Bone: tissue strength0.70.71.11.0-0.6-0.9
Total heroin consumption1.72.02.41.6-1.5-1.2
Bone: trabecular number0.10.10.2-0.2-0.30.4
Bone: trabecular spacing1.82.32.7-1.61.51.4
Bone: trabecular thickness0.00.10.10.1-0.30.2
Bone: trabecular tissue density0.30.50.80.8-0.9-0.1
Water consumed over 24 hours1.31.73.0-1.30.81.7
Number of responses in last shaping day0.30.30.4-0.60.40.6