ENSRNOG00000070558

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000070558 0.12 0.06 4.6e-06 0.1 0.1 0.07 0.11 5.8e-06 3.6e-06 1.5e-04 2.7e-06
2 Brain gene expression ENSRNOG00000070558 0.09 0.06 1.6e-07 0.07 0.08 0.08 0.08 8.2e-07 1.5e-07 3.8e-08 8.3e-08
3 LHb gene expression ENSRNOG00000070558 0.16 0.1 7.4e-03 0.07 0.04 0.02 0.05 9.0e-03 4.6e-02 1.3e-01 2.7e-02
4 NAcc gene expression ENSRNOG00000070558 0.04 0.03 1.8e-03 0.04 0.03 0.02 0.03 6.1e-04 2.0e-03 7.2e-03 3.2e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.41.32.0-1.4-1.2-0.8-1.2
BMI without tail0.00.10.3-0.2-0.10.20.5
Body weight0.73.03.2-1.7-1.7-1.8-1.7
Epididymis fat weight0.20.51.01.00.80.40.3
Glucose0.61.01.7-1.3-1.0-1.0-0.4
Heart weight0.10.10.3-0.5-0.3-0.30.0
Left kidney weight2.46.98.7-2.9-2.6-2.7-2.3
Right kidney weight3.29.010.1-3.0-3.1-3.2-2.7
Tail length0.10.20.30.50.1-0.30.5
Length with tail0.10.30.70.0-0.2-0.8-0.6
Length without tail0.61.32.3-0.8-0.8-1.2-1.5
Liver weight, left4.26.88.8-2.4-2.9-3.0-2.1
Liver weight, right0.10.10.2-0.2-0.4-0.4-0.4
Parametrial fat weight3.26.37.52.72.72.12.4
Retroperitoneal fat weight0.41.52.41.61.11.01.1
Intraocular pressure2.63.74.31.91.81.92.1
Extensor digitorum longus weight7.028.231.2-4.7-5.5-5.6-5.4
Soleus weight0.51.42.3-1.0-1.5-1.3-0.6
Tibialis anterior weight8.529.230.5-5.2-5.5-5.5-5.5
Tibia length0.92.74.1-2.0-1.6-1.5-1.4
Number of licking bursts0.20.30.4-0.6-0.4-0.6-0.5
Food consumed during 24 hour testing period0.20.30.5-0.6-0.7-0.4-0.3
Times rat made contact with spout0.70.81.1-0.8-0.8-1.1-0.8
Mean time between licks in bursts0.81.12.60.60.81.01.6
Mean num. licks in bursts0.00.00.1-0.1-0.3-0.1-0.0
Std. dev. time between licks in bursts2.42.94.12.01.51.61.6
Water consumed over 24 hours0.50.60.9-0.6-0.7-1.0-0.8
Indifference point 0 sec0.00.10.10.40.30.0-0.1
Indifference point AUC0.30.40.6-0.8-0.8-0.3-0.4
Indifference point function ln k0.10.10.3-0.2-0.1-0.5-0.6
Indifference point function log k0.10.10.3-0.2-0.1-0.5-0.6
Delay discounting total patch changes 0 sec0.10.10.20.1-0.0-0.4-0.5
Delay discounting total patch changes 12 sec0.60.91.0-1.0-1.0-0.8-0.8
Delay discounting total patch changes 18 sec0.10.20.2-0.2-0.5-0.5-0.3
Delay discounting total patch changes 24 sec0.70.81.3-0.6-0.8-1.1-1.0
Delay discounting total patch changes 6 sec0.10.10.1-0.3-0.4-0.2-0.3
Delay discounting time to switch 0 sec0.30.50.60.80.80.60.6
Delay discounting water rate 0 sec1.11.82.7-1.2-1.1-1.3-1.6
Delay discounting water rate 12 sec2.63.84.8-1.6-1.9-2.2-2.0
Delay discounting water rate 18 sec7.09.310.4-2.9-2.9-3.2-3.2
Delay discounting water rate 24 sec0.50.81.5-0.6-0.9-1.2-0.6
Delay discounting water rate 6 sec1.92.83.9-1.3-1.6-2.0-1.8
Locomotor activity3.15.06.2-2.0-2.2-2.5-2.1
Locomotor testing distance0.30.51.1-0.6-0.6-1.0-0.5
Locomotor testing rearing0.10.10.4-0.6-0.3-0.2-0.1
Light reinforcement 10.40.61.0-0.6-0.7-0.8-1.0
Light reinforcement 20.91.21.91.41.31.10.4
Reaction time number correct0.00.10.20.00.10.20.4
Reaction time mean minus median0.00.00.10.3-0.30.0-0.2
Reaction time mean minus median AUC0.00.00.1-0.1-0.30.3-0.1
Reaction time num false alarms0.30.40.9-0.6-0.6-1.0-0.3
Reaction time num false alarms AUC0.60.91.5-1.0-1.0-1.2-0.4
Reaction time trials correct on left0.00.10.20.00.10.20.4
Reaction time trials on left0.10.10.20.00.20.30.5
Reaction time mean0.60.91.21.10.90.90.7
Reaction time mean AUC0.81.11.51.21.11.10.7
Median of all reaction times0.91.31.61.31.21.10.9
Reaction time omissions1.31.83.00.81.11.71.6
Reaction time false alarm rate0.71.01.5-1.0-1.0-1.2-0.7
Reaction time premature initiation rate0.20.20.50.1-0.5-0.7-0.4
Reaction time premature initiations0.00.10.20.2-0.2-0.40.0
Std. dev. reaction times0.40.50.80.80.60.90.5
Reaction time trials completed0.10.10.20.00.20.30.5
Reaction time trials AUC0.10.10.20.10.20.30.5
Social response proportion3.03.34.11.62.02.01.5
Social responses1.52.02.51.21.41.51.6
Social time1.21.62.9-1.7-1.2-0.8-1.2
Conditioned locomotion1.01.22.31.51.30.80.3
Cocaine response after cond. corrected0.50.50.80.60.90.70.7
Cocaine response after cond. not corrected0.40.40.60.50.80.60.6
Cocaine response before conditioning0.50.60.8-0.7-0.9-0.8-0.7
Saline control response0.30.41.11.10.30.40.6
Condit. Reinf. active minus inactive responses0.20.20.5-0.5-0.7-0.4-0.3
Condit. Reinf. active-inactive response ratio0.80.81.1-1.0-1.1-0.8-0.6
Condit. Reinf. active responses0.40.61.0-0.7-1.0-0.8-0.7
Condit. Reinf. inactive responses0.60.71.31.20.70.80.6
Condit. Reinf. lever presses3.64.97.0-2.1-2.6-2.1-2.0
Condit. Reinf. lever reinforcers received0.71.01.7-0.8-1.3-1.0-0.9
Pavlov. Cond. lever latency4.25.77.02.32.72.22.4
Pavlov. Cond. magazine entry latency1.21.42.5-0.8-1.6-1.2-1.1
Pavlov. Cond. change in total contacts4.56.27.8-2.2-2.8-2.5-2.5
Pavlov. Cond. index score3.64.76.7-1.9-2.6-2.1-2.1
Pavlov. Cond. latency score3.54.46.5-1.8-2.5-2.0-2.0
Pavlov. Cond. lever contacts3.65.06.3-2.1-2.5-2.0-2.3
Pavlov. Cond. magazine entry number1.62.03.01.11.71.41.3
Pavlov. Cond. intertrial magazine entries2.02.53.11.01.71.81.7
Pavlov. Cond. lever-magazine prob. diff.3.24.16.1-1.7-2.5-1.9-1.9
Pavlov. Cond. response bias3.75.16.8-2.0-2.6-2.1-2.2
Conditioned reinforcement - actives11.611.413.43.73.33.43.1
Conditioned reinforcement - inactives3.64.14.52.02.12.02.0
Conditioned locomotion5.06.08.12.92.52.51.9
Intermittent access intake day 1-15 change1.61.62.41.21.11.11.5
Intermittent access intake escalation2.22.23.61.41.31.21.9
Intermittent access intake escalation 20.70.71.30.70.70.71.1
Intermitt. access day 1 inactive lever presses3.94.25.41.72.32.12.0
Intermitt. access day 15 inactive lever presses1.31.41.81.11.41.11.2
Intermitt. access escalation Index0.50.40.7-0.8-0.7-0.6-0.5
Intermittent access day 1 total infusions0.70.71.31.20.80.60.8
Intermittent access day 15 total infusions3.53.94.72.11.91.72.2
Intermittent access terminal intake (last 3 days)2.62.83.31.81.81.41.8
Intermittent access total infusions3.94.35.32.32.11.82.0
Intermittent access day 1 locomotion0.30.30.60.80.60.40.2
Intermittent access day 15 total locomotion3.23.44.02.01.91.51.9
Intermittent access total locomotion1.92.22.71.61.61.21.4
Intermittent access standard deviation1.61.72.51.61.30.91.3
Cocaine induced anxiety0.50.61.7-0.2-0.5-0.6-1.3
Post-drug Anxiety0.20.20.6-0.0-0.1-0.1-0.8
Baseline Anxiety0.10.20.40.10.20.40.6
Lifetime Intake4.44.96.32.52.22.02.1
Incentive Sensitization - Responses2.12.14.20.81.01.62.1
Incentive Sensitization - Breakpoint1.91.93.80.81.01.51.9
Progressive ratio test 1 active lever presses0.40.40.60.80.70.60.4
Progressive ratio test 1 breakpoint0.40.40.60.70.80.50.4
Progressive ratio test 1 inactive lever presses0.70.71.20.81.10.90.4
Progressive ratio test 2 active lever presses3.13.34.01.71.61.92.0
Progressive ratio test 2 breakpoint1.92.12.61.21.31.61.6
Progressive ratio test 2 inactive lever presses1.01.21.60.80.91.21.2
Total sessions with >9 infusions5.66.16.82.52.62.52.2
Short access day 1 total inactive lever presses0.20.20.40.50.60.30.0
Short access day 10 total inactive lever presses0.10.10.5-0.7-0.3-0.1-0.1
Short access day 1 total infusions5.76.07.52.72.72.32.0
Short access day 10 total infusions0.70.81.81.30.90.60.4
Short access total infusions2.93.24.82.21.81.61.4
Short access day 1 locomotion2.22.33.11.71.71.41.1
Short access day 10 total locomotion0.00.00.00.1-0.10.2-0.1
Short access total locomotion0.50.50.70.90.80.70.5
Compulsive drug intake1.21.21.7-1.3-1.1-0.6-1.1
One hour access (0.3 mA shock)2.32.63.31.51.31.81.8
One hour access (shock baseline)5.05.86.92.62.42.12.4
Number of responses in last shaping day1.31.32.21.51.50.50.7
Context. condit. distance diff. score0.30.30.50.70.60.50.5
Locomotion velocity, session 11.21.31.8-1.3-1.4-1.0-0.8
Locomotion distance, session 11.21.51.6-1.2-1.3-1.2-1.2
Locomotion velocity, session 20.60.71.4-0.8-0.5-0.7-1.2
Locomotion distance, session 20.20.30.5-0.7-0.2-0.5-0.7
Locomotion velocity, session 31.41.61.9-1.3-1.2-1.4-1.2
Locomotion distance, session 31.92.12.8-1.5-1.3-1.3-1.7
Stereotopy head waving bouts, day 31.01.21.71.01.00.91.3
Stereotopy head waving duration, day 30.10.10.2-0.2-0.3-0.40.1
Locomotion velocity, session 70.10.10.2-0.50.2-0.0-0.2
Locomotion distance, session 71.41.72.91.21.71.21.1
Stereotopy head waving bouts, day 73.23.64.4-2.0-2.1-1.9-1.5
Stereotopy head waving duration, day 74.45.46.4-2.3-2.5-2.4-2.0
Locomotion velocity, session 80.40.41.0-0.5-0.3-0.7-1.0
Locomotion distance, session 80.10.10.3-0.2-0.1-0.4-0.6
Degree of sensitization distance7.57.68.92.63.02.72.8
Degree of sensitization stereotypy3.43.74.6-1.8-2.1-1.9-1.8
Condit. Reinf. active minus inactive responses1.71.93.0-1.5-1.7-1.3-0.9
Condit. Reinf. active-inactive response ratio0.10.10.3-0.4-0.5-0.10.2
Condit. Reinf. active responses2.32.94.6-1.7-2.1-1.7-1.1
Condit. Reinf. inactive responses1.01.21.8-0.7-1.3-1.3-0.8
Incentive salience index mean3.13.75.4-2.0-2.3-1.8-1.4
Condit. Reinf. lever presses3.04.15.8-2.1-2.4-1.9-1.6
Time in familiar zone, hab. session 10.10.10.2-0.2-0.5-0.40.2
Time in novel zone, hab. session 10.10.10.40.20.60.3-0.1
Total zone transitions, hab. session 11.11.63.0-1.0-1.0-1.1-1.7
Total locomotion distance, hab. session 10.20.20.5-0.1-0.5-0.7-0.5
Locomotion velocity, hab. session 10.30.40.7-0.1-0.7-0.9-0.7
Time in familiar zone, hab. session 20.90.91.71.30.70.71.0
Time in novel zone, hab. session 20.60.61.0-1.0-0.5-0.5-0.9
Total zone transitions, hab. session 22.53.24.4-1.5-1.7-1.9-2.1
Total locomotion distance, hab. session 21.52.02.8-1.0-1.2-1.6-1.7
Locomotion velocity, hab. session 21.82.43.3-1.2-1.4-1.8-1.8
Novel to familiar place preference ratio1.41.52.41.01.51.31.0
Novelty place preference1.31.32.20.81.51.30.8
Time in novel zone, NPP test1.21.22.10.81.51.20.8
Total zone transitions, NPP test1.42.02.7-1.3-1.4-1.4-1.6
Total locomotion distance, NPP test0.00.00.1-0.30.0-0.2-0.1
Locomotion velocity, NPP test0.10.10.2-0.4-0.1-0.3-0.3
Pavlov. Cond. lever latency1.01.31.81.31.20.81.1
Pavlov. Cond. magazine entry latency0.00.00.10.0-0.30.10.2
Pavlov. Cond. change in total contacts0.50.60.7-0.8-0.8-0.3-0.8
Pavlov. Cond. index score1.72.22.8-1.7-1.6-1.1-1.5
Pavlov. Cond. latency score1.41.82.3-1.5-1.5-1.0-1.3
Pavlov. Cond. lever contacts1.31.52.0-1.4-1.3-0.9-1.2
Pavlov. Cond. magazine entry number0.60.81.10.91.10.70.7
Pavlov. Cond. intertrial magazine entries1.41.72.7-1.0-1.6-1.5-0.9
Pavlov. Cond. lever-magazine prob. diff.2.12.73.3-1.8-1.7-1.3-1.7
Pavlov. Cond. response bias1.72.12.9-1.5-1.7-1.3-1.3
Bone: apparent density0.10.10.50.30.70.10.1
Bone surface0.10.20.40.40.60.40.1
Bone volume0.10.10.40.10.60.1-0.1
Bone: connectivity density0.61.01.31.01.11.00.7
Bone: cortical apparent density0.70.91.5-1.0-1.2-1.0-0.4
Bone: cortical area0.00.10.2-0.3-0.1-0.1-0.4
Bone: cortical porosity1.11.21.9-0.4-1.1-1.3-1.4
Bone: cortical porosity1.11.11.7-0.4-1.1-1.3-1.3
Bone: cortical thickness0.20.40.4-0.6-0.6-0.6-0.6
Bone: cortical thickness1.11.31.7-1.2-0.9-0.9-1.3
Bone: cortical tissue density0.70.91.5-1.0-1.2-1.0-0.3
Bone: elastic displacement0.50.50.91.00.80.70.4
Bone: elastic work0.10.20.4-0.1-0.4-0.6-0.4
Bone: endosteal estimation0.20.50.80.80.90.70.3
Bone: endosteal perimeter0.81.62.31.31.51.40.7
Bone: final force0.71.22.1-0.7-1.0-1.5-1.0
Bone: final moment0.91.52.6-0.8-1.2-1.6-1.0
Bone: marrow area0.30.61.00.91.00.70.3
Bone: maximum diameter0.50.91.50.91.21.10.3
Bone: maximum force0.50.81.8-0.4-0.8-1.4-0.8
Bone: maximum moment0.71.22.4-0.6-1.1-1.5-0.9
Bone: minimum diameter0.10.10.20.30.50.4-0.0
Bone: periosteal estimation0.20.50.80.70.90.80.2
Bone: periosteal perimeter0.20.40.60.40.80.80.1
Bone: post-yield work0.10.10.20.1-0.0-0.4-0.4
Bone: stiffness0.30.40.7-0.6-0.5-0.8-0.7
Bone: tissue strength0.50.51.50.70.30.21.2
Bone: trabecular number0.50.81.60.81.20.90.5
Bone: trabecular spacing0.10.10.2-0.2-0.5-0.4-0.1
Bone: trabecular thickness1.11.41.9-1.1-0.9-1.3-1.4
Bone: trabecular tissue density0.81.11.2-1.0-1.1-1.1-0.9
Breakpoint value in progressive ratio session0.20.20.70.10.0-0.20.8
Distance traveled before self-admin0.20.20.40.6-0.0-0.20.5
Distance traveled after self-admin0.80.91.71.31.10.80.4
Delta time in closed arm before/after self-admin0.10.10.20.40.1-0.10.3
Delta time in open arm before/after self-admin2.62.54.41.01.82.11.1
Diff in mean of infusions in LGA sessions0.10.10.20.30.2-0.4-0.2
Extinction: sum of active levers before priming0.60.61.80.70.40.11.4
Active lever presses in extinction session 60.10.10.30.50.3-0.00.4
Delta distance traveled before/after self-admin0.91.01.80.71.31.30.1
Delta ambulatory time before/after self-admin0.70.71.20.71.11.10.2
Time in closed arm before self-admin2.22.53.6-1.4-1.5-1.5-1.9
Time in closed arm after self-admin3.03.13.6-1.5-1.9-1.9-1.7
Time in open arm before self-admin0.20.20.50.2-0.4-0.7-0.3
Time in open arm after self-admin1.41.62.01.01.41.41.2
Sum of active levers in priming session hrs 5-60.00.00.0-0.1-0.10.10.1
Time to tail flick, vehicle, before self-admin0.10.10.20.4-0.2-0.1-0.3
Time to tail flick, vehicle, after self-admin0.10.10.3-0.4-0.3-0.5-0.2
Time to tail flick, test, before self-admin1.21.21.8-0.9-1.3-1.3-0.8
Time to tail flick, test, after self-admin2.12.22.91.31.21.71.6
Delta time to tail flick, vehicle, before/after SA0.10.10.2-0.50.2-0.00.3
Delta time to tail flick, test, before/after SA2.92.63.71.41.61.91.5
Ambulatory time before self-admin0.40.40.8-0.1-0.7-0.9-0.5
Ambulatory time after self-admin0.20.20.40.40.2-0.3-0.6
Total heroin consumption0.20.20.5-0.5-0.7-0.3-0.0
Area under the delay curve3.03.24.9-1.4-1.6-1.9-2.2
Delay disc. indifference point, 0s delay0.10.10.3-0.0-0.2-0.5-0.6
Delay disc. indifference point, 16s delay0.60.61.1-0.4-0.5-1.0-1.0
Delay disc. indifference point, 2s delay1.51.72.3-1.0-1.4-1.5-1.3
Delay disc. indifference point, 24s delay0.80.71.4-0.7-0.7-0.7-1.2
Delay disc. indifference point, 4s delay3.23.44.4-1.5-1.7-2.1-2.0
Delay disc. indifference point, 8s delay3.13.26.1-1.4-1.4-1.6-2.5
Delay discount exponential model param4.24.56.41.72.02.22.5
Delay discount hyperbolic model param4.24.56.11.72.02.22.5
Fecal boli incidents, locomotor time 13.74.04.9-2.1-2.2-1.7-2.0
Change in fecal boli incidents, locomotor task1.41.32.51.01.61.10.7
Time >=10cm from walls, locomotor time 10.10.10.40.1-0.4-0.60.1
Bouts of movement, locomotor time 10.80.91.4-1.2-0.9-0.8-1.0
Total resting periods, locomotor time 10.70.81.4-1.2-0.8-0.7-0.9
Rest time, locomotor task time 13.94.37.0-2.6-2.1-1.6-1.7
Distance moved, locomotor task time 12.62.84.52.11.61.11.7
Vertical activity count, locomotor time 12.62.74.72.21.81.01.4
Time >=10cm from walls, locomotor time 20.20.30.50.70.4-0.40.5
Bouts of movement, locomotor time 20.30.30.6-0.6-0.2-0.2-0.8
Total resting periods, locomotor time 20.70.81.2-1.1-0.6-0.6-1.1
Rest time, locomotor task time 23.74.36.5-2.6-1.9-1.7-2.1
Distance moved, locomotor task time 21.01.22.51.60.80.31.2
Vertical activity count, locomotor time 22.22.44.62.21.20.91.6
Weight adjusted by age2.12.32.7-1.5-1.5-1.4-1.6
Seeking ratio, delayed vs. immediate footshock2.42.74.22.11.81.70.7
Locomotion in novel chamber1.31.72.0-1.2-1.3-1.4-1.3
Locomotion in novel chamber post-restriction0.50.52.00.00.40.0-1.4
Progressive ratio0.10.10.3-0.3-0.0-0.2-0.5
Food seeking constrained by brief footshock0.40.51.30.50.40.61.2
Seeking ratio, punishment vs. effort0.10.10.30.3-0.20.00.5
Run reversals in cocaine runway, females1.11.11.91.41.11.00.7
Run reversals in cocaine runway, males0.90.81.3-0.6-1.2-0.9-1.0
Latency to leave start box in cocaine runway0.70.71.70.50.91.30.3
Latency to leave start box in cocaine runway, F1.31.42.90.81.21.70.8
Latency to leave start box in cocaine runway, M0.30.30.6-0.8-0.6-0.2-0.4
Cd content in liver0.50.60.80.40.80.90.9
Co content in liver0.30.40.6-0.4-0.5-0.8-0.7
Cu content in liver1.82.22.9-1.7-1.4-1.3-1.4
Fe content in liver0.30.30.70.20.50.40.8
K content in liver0.10.10.40.70.2-0.00.2
Mg content in liver1.11.11.71.31.00.71.1
Mn content in liver1.11.32.21.51.00.81.2
Na content in liver2.93.14.6-1.3-1.8-2.2-1.6
Rb content in liver4.35.36.72.62.42.02.3
Se content in liver2.93.54.11.82.01.91.7
Sr content in liver0.30.30.5-0.30.50.70.6
Zn content in liver1.01.11.6-0.7-1.1-1.3-1.1