ENSRNOG00000070544

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000070544 0.26 0.15 5.6e-17 0.18 0.2 0.18 0.18 7.9e-17 6.2e-18 2.5e-16 7.3e-17
2 Eye gene expression ENSRNOG00000070544 0.3 0.19 6.9e-04 0.09 0.16 0.12 0.12 1.8e-02 1.8e-03 7.7e-03 6.0e-03
3 Liver gene expression ENSRNOG00000070544 0.18 0.12 0.0e+00 0.15 0.16 0.16 0.16 9.8e-17 4.2e-17 4.4e-17 6.5e-17
4 PL gene expression ENSRNOG00000070544 0.03 0.03 1.7e-03 0.03 0.02 0.02 0.03 4.5e-03 5.7e-03 1.0e-02 3.5e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail4.313.915.73.44.03.83.7
BMI without tail0.20.40.70.80.30.60.7
Body weight4.820.324.94.05.04.64.4
Epididymis fat weight0.00.00.1-0.00.40.20.1
Glucose0.30.40.8-0.9-0.4-0.6-0.7
Heart weight0.10.10.10.30.30.30.3
Left kidney weight0.92.52.81.71.41.61.6
Right kidney weight2.05.87.02.12.62.52.4
Tail length0.00.10.2-0.1-0.4-0.3-0.2
Length with tail1.65.87.12.12.72.52.3
Length without tail4.910.614.42.63.83.43.1
Liver weight, left1.62.53.11.31.81.61.6
Liver weight, right1.52.42.81.41.71.61.5
Parametrial fat weight1.32.63.7-1.3-1.9-1.7-1.5
Retroperitoneal fat weight1.13.53.7-1.9-1.8-1.9-1.9
Intraocular pressure5.07.19.6-2.2-3.1-2.8-2.5
Extensor digitorum longus weight4.518.218.84.14.34.34.2
Soleus weight1.03.03.11.71.71.71.8
Tibialis anterior weight2.89.611.83.42.63.13.2
Tibia length4.512.516.72.94.13.73.4
Number of licking bursts1.21.41.5-1.2-1.1-1.2-1.2
Food consumed during 24 hour testing period1.61.92.21.21.51.41.4
Times rat made contact with spout0.00.00.1-0.0-0.3-0.2-0.1
Mean time between licks in bursts0.00.00.0-0.1-0.1-0.1-0.1
Mean num. licks in bursts0.50.60.80.90.60.70.8
Std. dev. time between licks in bursts1.31.51.9-1.1-1.4-1.3-1.2
Water consumed over 24 hours0.10.10.2-0.4-0.1-0.3-0.3
Indifference point 0 sec5.99.610.5-3.2-2.8-3.1-3.2
Indifference point AUC0.20.20.4-0.3-0.6-0.5-0.4
Indifference point function ln k4.96.97.52.52.72.72.6
Indifference point function log k4.96.97.52.52.72.72.6
Delay discounting total patch changes 0 sec5.58.99.7-3.1-2.7-3.0-3.1
Delay discounting total patch changes 12 sec5.87.78.2-2.8-2.6-2.8-2.9
Delay discounting total patch changes 18 sec7.19.49.7-3.0-3.1-3.1-3.1
Delay discounting total patch changes 24 sec4.45.65.9-2.4-2.3-2.4-2.4
Delay discounting total patch changes 6 sec6.610.110.8-3.3-3.0-3.2-3.3
Delay discounting time to switch 0 sec2.53.84.3-1.8-2.1-2.0-2.0
Delay discounting water rate 0 sec3.25.15.42.12.32.32.3
Delay discounting water rate 12 sec2.94.35.51.72.32.12.0
Delay discounting water rate 18 sec0.40.60.60.70.80.80.7
Delay discounting water rate 24 sec4.86.77.22.52.62.62.7
Delay discounting water rate 6 sec5.58.08.42.72.82.92.9
Locomotor activity1.22.02.2-1.3-1.5-1.4-1.5
Locomotor testing distance3.45.66.0-2.2-2.4-2.4-2.4
Locomotor testing rearing2.33.54.0-1.7-2.0-1.9-1.9
Light reinforcement 10.91.73.2-0.8-1.8-1.4-1.1
Light reinforcement 20.10.10.20.5-0.4-0.00.2
Reaction time number correct1.21.82.41.11.61.41.2
Reaction time mean minus median5.97.710.2-2.3-3.2-2.9-2.7
Reaction time mean minus median AUC4.35.47.1-1.9-2.7-2.4-2.2
Reaction time num false alarms1.41.92.3-1.2-1.5-1.4-1.3
Reaction time num false alarms AUC1.62.22.9-1.3-1.7-1.5-1.4
Reaction time trials correct on left1.21.82.41.11.61.41.2
Reaction time trials on left1.01.41.91.01.41.21.1
Reaction time mean0.70.91.1-0.9-1.1-1.0-0.9
Reaction time mean AUC0.40.50.7-0.6-0.8-0.7-0.6
Median of all reaction times0.00.00.0-0.1-0.1-0.1-0.0
Reaction time omissions8.010.713.4-2.8-3.7-3.4-3.2
Reaction time false alarm rate1.82.63.6-1.3-1.9-1.7-1.5
Reaction time premature initiation rate4.66.28.3-2.0-2.9-2.6-2.5
Reaction time premature initiations1.92.73.6-1.3-1.9-1.7-1.6
Std. dev. reaction times5.17.08.7-2.3-3.0-2.7-2.6
Reaction time trials completed1.01.41.91.01.41.21.1
Reaction time trials AUC1.62.33.11.31.81.61.4
Social response proportion0.10.10.2-0.2-0.4-0.3-0.3
Social responses5.47.09.4-2.2-3.1-2.7-2.5
Social time0.20.30.40.70.40.50.6
Conditioned locomotion0.00.00.0-0.20.0-0.1-0.1
Cocaine response after cond. corrected0.00.00.00.1-0.00.00.0
Cocaine response after cond. not corrected0.20.20.4-0.3-0.6-0.5-0.5
Cocaine response before conditioning2.12.63.5-1.3-1.9-1.6-1.5
Saline control response0.00.00.0-0.20.20.0-0.1
Condit. Reinf. active minus inactive responses0.91.11.71.30.61.01.2
Condit. Reinf. active-inactive response ratio0.80.81.61.30.30.81.0
Condit. Reinf. active responses0.10.10.30.50.00.30.4
Condit. Reinf. inactive responses0.81.01.0-1.0-1.0-1.0-1.0
Condit. Reinf. lever presses0.00.00.00.00.00.00.0
Condit. Reinf. lever reinforcers received0.00.10.20.1-0.4-0.2-0.0
Pavlov. Cond. lever latency0.81.11.51.20.81.01.1
Pavlov. Cond. magazine entry latency0.10.20.4-0.60.4-0.1-0.3
Pavlov. Cond. change in total contacts0.50.71.10.61.00.90.7
Pavlov. Cond. index score0.40.51.0-1.0-0.1-0.5-0.7
Pavlov. Cond. latency score0.30.41.0-1.0-0.0-0.5-0.7
Pavlov. Cond. lever contacts0.71.01.2-1.1-0.8-1.0-1.0
Pavlov. Cond. magazine entry number0.20.20.50.4-0.7-0.20.0
Pavlov. Cond. intertrial magazine entries2.43.14.9-1.2-2.2-1.8-1.6
Pavlov. Cond. lever-magazine prob. diff.0.20.20.5-0.70.2-0.2-0.4
Pavlov. Cond. response bias0.30.50.7-0.8-0.5-0.7-0.7
Conditioned reinforcement - actives1.11.11.5-0.8-1.2-1.1-1.0
Conditioned reinforcement - inactives2.02.22.7-1.3-1.6-1.5-1.4
Conditioned locomotion0.10.20.3-0.3-0.5-0.4-0.4
Intermittent access intake day 1-15 change0.30.30.7-0.0-0.9-0.5-0.3
Intermittent access intake escalation0.10.10.30.3-0.6-0.20.1
Intermittent access intake escalation 20.20.20.70.1-0.8-0.4-0.1
Intermitt. access day 1 inactive lever presses0.40.40.9-0.3-1.0-0.7-0.5
Intermitt. access day 15 inactive lever presses0.10.10.40.0-0.6-0.3-0.2
Intermitt. access escalation Index0.80.70.9-0.9-0.7-0.8-0.8
Intermittent access day 1 total infusions1.31.41.6-1.1-1.3-1.2-1.2
Intermittent access day 15 total infusions1.82.02.9-1.1-1.7-1.5-1.3
Intermittent access terminal intake (last 3 days)1.81.93.0-1.0-1.7-1.4-1.2
Intermittent access total infusions1.71.92.8-1.1-1.7-1.4-1.2
Intermittent access day 1 locomotion1.51.51.7-1.3-1.1-1.2-1.3
Intermittent access day 15 total locomotion1.21.31.7-1.0-1.3-1.2-1.0
Intermittent access total locomotion3.94.44.7-2.0-2.2-2.1-2.0
Intermittent access standard deviation0.10.10.10.4-0.3-0.00.0
Cocaine induced anxiety0.80.91.10.91.11.00.9
Post-drug Anxiety5.15.66.32.12.52.42.4
Baseline Anxiety0.80.91.00.81.00.90.9
Lifetime Intake2.52.83.6-1.4-1.9-1.7-1.6
Incentive Sensitization - Responses0.30.30.50.70.30.50.7
Incentive Sensitization - Breakpoint0.20.20.40.60.20.40.6
Progressive ratio test 1 active lever presses8.48.79.0-2.9-2.9-3.0-3.0
Progressive ratio test 1 breakpoint7.27.47.6-2.7-2.7-2.8-2.7
Progressive ratio test 1 inactive lever presses2.32.43.3-1.3-1.8-1.6-1.5
Progressive ratio test 2 active lever presses2.12.22.9-1.3-1.7-1.5-1.4
Progressive ratio test 2 breakpoint2.32.63.6-1.3-1.9-1.7-1.5
Progressive ratio test 2 inactive lever presses1.21.32.2-0.8-1.5-1.2-1.0
Total sessions with >9 infusions1.51.72.0-1.2-1.4-1.3-1.3
Short access day 1 total inactive lever presses1.31.41.8-1.0-1.4-1.2-1.1
Short access day 10 total inactive lever presses0.10.10.10.40.10.20.3
Short access day 1 total infusions0.60.60.7-0.9-0.7-0.8-0.8
Short access day 10 total infusions2.62.93.0-1.7-1.6-1.7-1.7
Short access total infusions1.81.92.0-1.4-1.4-1.4-1.4
Short access day 1 locomotion0.20.30.3-0.5-0.5-0.5-0.5
Short access day 10 total locomotion0.20.20.2-0.4-0.4-0.4-0.5
Short access total locomotion0.50.50.6-0.7-0.8-0.7-0.7
Compulsive drug intake1.81.81.91.31.31.41.3
One hour access (0.3 mA shock)0.10.10.20.5-0.30.10.2
One hour access (shock baseline)0.00.00.10.2-0.3-0.10.1
Number of responses in last shaping day0.40.40.60.80.40.60.7
Context. condit. distance diff. score0.20.20.30.40.60.50.5
Locomotion velocity, session 13.94.25.0-2.2-1.7-2.0-2.2
Locomotion distance, session 12.83.73.8-1.8-2.0-1.9-1.9
Locomotion velocity, session 20.30.30.4-0.5-0.6-0.6-0.6
Locomotion distance, session 22.94.24.3-2.0-2.0-2.1-2.1
Locomotion velocity, session 34.75.55.9-2.2-2.4-2.4-2.3
Locomotion distance, session 33.23.54.9-1.5-2.2-1.9-1.8
Stereotopy head waving bouts, day 30.10.10.3-0.20.50.20.0
Stereotopy head waving duration, day 30.10.10.2-0.50.2-0.1-0.2
Locomotion velocity, session 72.83.13.9-2.0-1.4-1.7-1.9
Locomotion distance, session 74.05.25.5-2.3-2.2-2.3-2.3
Stereotopy head waving bouts, day 70.50.60.70.70.80.80.8
Stereotopy head waving duration, day 71.11.31.51.11.21.21.2
Locomotion velocity, session 80.40.40.7-0.8-0.4-0.6-0.7
Locomotion distance, session 81.11.71.8-1.3-1.3-1.3-1.3
Degree of sensitization distance0.00.00.1-0.20.30.1-0.0
Degree of sensitization stereotypy0.70.70.91.00.60.80.9
Condit. Reinf. active minus inactive responses0.10.10.1-0.4-0.3-0.3-0.3
Condit. Reinf. active-inactive response ratio0.10.10.20.20.50.40.4
Condit. Reinf. active responses0.80.91.0-0.9-1.0-1.0-1.0
Condit. Reinf. inactive responses2.83.33.8-1.6-2.0-1.9-1.8
Incentive salience index mean0.00.00.0-0.00.10.00.0
Condit. Reinf. lever presses0.40.60.70.80.60.70.8
Time in familiar zone, hab. session 10.00.00.10.2-0.10.00.1
Time in novel zone, hab. session 10.00.00.1-0.00.30.20.1
Total zone transitions, hab. session 10.10.10.2-0.1-0.4-0.3-0.2
Total locomotion distance, hab. session 10.30.40.7-0.8-0.3-0.6-0.7
Locomotion velocity, hab. session 10.20.20.5-0.7-0.2-0.4-0.5
Time in familiar zone, hab. session 21.51.61.91.41.11.31.3
Time in novel zone, hab. session 21.71.72.3-1.5-1.0-1.3-1.4
Total zone transitions, hab. session 20.20.30.3-0.4-0.6-0.5-0.5
Total locomotion distance, hab. session 20.40.50.6-0.8-0.6-0.7-0.8
Locomotion velocity, hab. session 20.20.30.4-0.6-0.4-0.5-0.6
Novel to familiar place preference ratio1.41.51.91.01.41.31.2
Novelty place preference0.80.91.20.71.11.00.9
Time in novel zone, NPP test0.60.60.90.51.00.80.7
Total zone transitions, NPP test2.63.74.0-2.0-1.8-1.9-2.0
Total locomotion distance, NPP test3.44.75.0-2.2-2.0-2.2-2.2
Locomotion velocity, NPP test2.23.23.5-1.9-1.6-1.8-1.9
Pavlov. Cond. lever latency0.10.20.5-0.70.1-0.3-0.4
Pavlov. Cond. magazine entry latency0.91.11.61.30.71.01.2
Pavlov. Cond. change in total contacts1.21.22.01.40.71.01.2
Pavlov. Cond. index score0.60.81.31.10.50.81.0
Pavlov. Cond. latency score0.50.61.11.00.40.70.9
Pavlov. Cond. lever contacts0.10.10.30.6-0.30.10.3
Pavlov. Cond. magazine entry number0.30.40.6-0.8-0.3-0.5-0.7
Pavlov. Cond. intertrial magazine entries4.55.47.4-2.7-1.7-2.3-2.5
Pavlov. Cond. lever-magazine prob. diff.0.91.21.71.30.81.01.2
Pavlov. Cond. response bias0.20.30.50.70.10.40.6
Bone: apparent density7.612.516.03.04.03.63.4
Bone surface10.017.621.33.74.64.34.1
Bone volume9.115.417.23.64.14.03.9
Bone: connectivity density4.16.49.32.03.02.62.4
Bone: cortical apparent density0.20.30.4-0.4-0.6-0.5-0.6
Bone: cortical area6.09.112.02.53.53.12.9
Bone: cortical porosity0.10.10.20.4-0.20.10.3
Bone: cortical porosity0.10.10.20.2-0.5-0.2-0.0
Bone: cortical thickness1.62.63.81.31.91.71.5
Bone: cortical thickness0.20.30.5-0.7-0.3-0.5-0.6
Bone: cortical tissue density0.30.40.5-0.5-0.7-0.7-0.7
Bone: elastic displacement6.47.37.7-2.7-2.6-2.7-2.8
Bone: elastic work0.00.00.0-0.10.1-0.0-0.1
Bone: endosteal estimation7.516.218.83.64.34.14.0
Bone: endosteal perimeter6.914.215.83.54.03.93.8
Bone: final force10.617.319.43.84.44.34.1
Bone: final moment12.019.821.84.14.74.54.4
Bone: marrow area7.115.218.03.44.24.03.9
Bone: maximum diameter1.63.04.41.32.11.81.6
Bone: maximum force14.124.528.74.55.45.14.9
Bone: maximum moment15.827.531.54.85.65.45.2
Bone: minimum diameter8.515.818.23.64.34.13.9
Bone: periosteal estimation9.619.623.93.94.94.64.3
Bone: periosteal perimeter9.315.417.93.54.24.03.9
Bone: post-yield work8.511.513.83.03.73.53.3
Bone: stiffness18.328.932.05.05.75.55.3
Bone: tissue strength2.02.02.11.31.41.41.4
Bone: trabecular number4.26.58.92.13.02.62.4
Bone: trabecular spacing1.31.72.5-1.0-1.6-1.3-1.2
Bone: trabecular thickness0.50.61.21.10.30.70.8
Bone: trabecular tissue density0.71.01.81.30.50.91.1
Breakpoint value in progressive ratio session0.00.00.10.10.30.20.1
Distance traveled before self-admin2.42.62.7-1.6-1.5-1.6-1.6
Distance traveled after self-admin0.50.50.7-0.8-0.7-0.8-0.7
Delta time in closed arm before/after self-admin0.10.10.10.20.40.30.3
Delta time in open arm before/after self-admin3.63.44.1-1.6-2.0-1.9-1.8
Diff in mean of infusions in LGA sessions1.21.41.81.01.41.21.1
Extinction: sum of active levers before priming0.70.70.80.70.90.80.8
Active lever presses in extinction session 60.10.10.20.10.40.30.2
Delta distance traveled before/after self-admin0.20.20.30.40.40.50.5
Delta ambulatory time before/after self-admin0.10.10.10.40.20.30.3
Time in closed arm before self-admin1.01.11.50.91.21.11.0
Time in closed arm after self-admin0.40.50.60.60.80.70.6
Time in open arm before self-admin0.10.10.30.10.50.30.2
Time in open arm after self-admin0.20.30.3-0.5-0.5-0.5-0.5
Sum of active levers in priming session hrs 5-60.40.40.6-0.8-0.4-0.6-0.6
Time to tail flick, vehicle, before self-admin0.80.80.9-0.7-1.0-0.9-0.9
Time to tail flick, vehicle, after self-admin0.50.60.70.80.70.80.7
Time to tail flick, test, before self-admin0.10.10.1-0.2-0.4-0.3-0.4
Time to tail flick, test, after self-admin0.80.81.01.00.80.90.9
Delta time to tail flick, vehicle, before/after SA0.70.70.80.90.80.90.8
Delta time to tail flick, test, before/after SA0.80.81.01.00.70.90.9
Ambulatory time before self-admin4.24.44.7-2.0-2.2-2.2-2.1
Ambulatory time after self-admin1.71.92.3-1.3-1.5-1.4-1.2
Total heroin consumption1.11.31.90.91.41.21.1
Area under the delay curve1.11.21.21.11.11.11.1
Delay disc. indifference point, 0s delay2.12.32.51.51.51.51.6
Delay disc. indifference point, 16s delay0.90.91.00.91.01.00.9
Delay disc. indifference point, 2s delay1.92.22.31.41.51.51.5
Delay disc. indifference point, 24s delay0.70.61.00.61.00.80.7
Delay disc. indifference point, 4s delay1.11.21.41.20.91.11.2
Delay disc. indifference point, 8s delay1.51.52.11.01.41.31.1
Delay discount exponential model param1.11.11.2-1.1-1.1-1.1-1.1
Delay discount hyperbolic model param1.21.31.3-1.1-1.1-1.1-1.1
Fecal boli incidents, locomotor time 11.21.31.9-0.9-1.4-1.2-1.1
Change in fecal boli incidents, locomotor task0.40.40.80.30.90.60.5
Time >=10cm from walls, locomotor time 10.30.30.7-0.8-0.2-0.5-0.6
Bouts of movement, locomotor time 10.00.00.0-0.00.10.00.0
Total resting periods, locomotor time 10.30.40.5-0.7-0.5-0.6-0.7
Rest time, locomotor task time 10.70.80.8-0.9-0.8-0.9-0.9
Distance moved, locomotor task time 10.00.00.0-0.10.1-0.00.0
Vertical activity count, locomotor time 11.01.11.30.91.11.01.1
Time >=10cm from walls, locomotor time 20.40.40.6-0.5-0.8-0.7-0.6
Bouts of movement, locomotor time 23.33.63.81.81.91.91.9
Total resting periods, locomotor time 23.84.04.21.92.02.02.1
Rest time, locomotor task time 20.10.10.2-0.4-0.2-0.3-0.3
Distance moved, locomotor task time 20.00.00.1-0.2-0.2-0.2-0.2
Vertical activity count, locomotor time 20.10.10.20.40.20.30.4
Weight adjusted by age0.40.41.00.31.00.70.4
Seeking ratio, delayed vs. immediate footshock0.70.80.90.90.80.90.9
Locomotion in novel chamber2.63.24.12.01.51.81.9
Locomotion in novel chamber post-restriction0.50.60.80.90.50.70.8
Progressive ratio0.91.01.4-1.2-0.8-1.0-1.1
Food seeking constrained by brief footshock1.72.12.4-1.5-1.2-1.4-1.5
Seeking ratio, punishment vs. effort0.10.10.20.40.20.30.4
Run reversals in cocaine runway, females0.50.50.80.90.50.70.7
Run reversals in cocaine runway, males0.80.81.2-0.7-1.1-0.9-0.8
Latency to leave start box in cocaine runway0.00.00.0-0.0-0.1-0.0-0.0
Latency to leave start box in cocaine runway, F1.61.82.1-1.2-1.4-1.4-1.3
Latency to leave start box in cocaine runway, M2.42.32.41.41.61.61.5
Cd content in liver0.50.50.8-0.6-0.9-0.8-0.7
Co content in liver0.60.70.9-0.6-1.0-0.8-0.8
Cu content in liver0.20.30.50.30.70.50.4
Fe content in liver0.91.11.2-1.1-1.0-1.1-1.1
K content in liver0.10.10.2-0.50.0-0.2-0.3
Mg content in liver0.20.20.3-0.5-0.4-0.5-0.5
Mn content in liver0.10.10.10.30.40.40.4
Na content in liver0.30.30.3-0.6-0.4-0.5-0.5
Rb content in liver2.12.73.2-1.8-1.4-1.6-1.8
Se content in liver2.02.52.7-1.6-1.5-1.6-1.6
Sr content in liver0.00.00.0-0.00.20.10.1
Zn content in liver2.93.23.3-1.7-1.8-1.8-1.8