ENSRNOG00000070389

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000070389 0.28 0.13 0.0e+00 0.28 0.29 0.29 0.29 7.7e-32 1.8e-32 7.0e-32 6.5e-32
2 BLA gene expression ENSRNOG00000070389 0.21 0.15 2.4e-09 0.13 0.13 0.1 0.12 1.2e-07 1.2e-07 5.6e-06 1.1e-06
3 Brain gene expression ENSRNOG00000070389 0.05 0.04 3.9e-05 0.05 0.05 0.05 0.05 2.7e-05 2.3e-05 1.9e-05 3.3e-05
4 PL gene expression ENSRNOG00000070389 0.04 0.04 4.4e-03 0.03 0.02 0.02 0.02 4.0e-03 1.6e-02 1.7e-02 8.6e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail4.313.921.7-3.3-3.4-4.7-3.3
BMI without tail1.83.78.0-1.4-1.7-2.8-1.5
Body weight5.322.536.5-4.1-4.5-6.0-4.1
Epididymis fat weight1.22.95.7-1.2-1.7-2.4-1.2
Glucose1.32.02.21.51.41.41.4
Heart weight0.00.00.10.20.2-0.10.2
Left kidney weight5.114.619.0-3.6-3.8-4.4-3.5
Right kidney weight4.212.015.9-3.2-3.4-4.0-3.2
Tail length0.10.41.30.2-0.4-1.20.1
Length with tail0.93.46.0-1.4-1.9-2.5-1.4
Length without tail3.26.97.5-2.6-2.6-2.7-2.6
Liver weight, left0.20.30.4-0.6-0.5-0.5-0.6
Liver weight, right0.00.00.1-0.2-0.00.1-0.0
Parametrial fat weight0.00.00.00.10.10.1-0.0
Retroperitoneal fat weight0.10.20.6-0.2-0.3-0.8-0.2
Intraocular pressure0.50.71.10.80.71.10.6
Extensor digitorum longus weight0.00.20.60.20.30.20.7
Soleus weight1.64.76.1-2.2-2.2-2.5-1.8
Tibialis anterior weight1.03.54.5-2.1-1.8-1.9-1.7
Tibia length1.85.17.7-2.0-2.4-2.8-1.8
Number of licking bursts0.20.20.30.40.40.50.5
Food consumed during 24 hour testing period0.10.10.10.10.20.40.4
Times rat made contact with spout0.10.10.20.30.30.40.4
Mean time between licks in bursts1.62.32.7-1.7-1.4-1.4-1.5
Mean num. licks in bursts0.00.00.00.10.10.00.0
Std. dev. time between licks in bursts0.00.00.0-0.00.0-0.00.1
Water consumed over 24 hours0.20.20.3-0.5-0.4-0.3-0.6
Indifference point 0 sec0.50.81.00.70.90.91.0
Indifference point AUC2.32.65.11.51.31.32.3
Indifference point function ln k1.62.33.7-1.5-1.3-1.3-1.9
Indifference point function log k1.62.33.7-1.5-1.3-1.3-1.9
Delay discounting total patch changes 0 sec0.71.11.30.81.11.11.2
Delay discounting total patch changes 12 sec1.11.53.11.00.91.01.8
Delay discounting total patch changes 18 sec1.72.33.41.31.51.31.9
Delay discounting total patch changes 24 sec0.20.30.90.20.20.30.9
Delay discounting total patch changes 6 sec3.96.07.52.22.42.52.7
Delay discounting time to switch 0 sec0.20.30.9-0.1-0.2-0.1-1.0
Delay discounting water rate 0 sec0.10.10.30.10.0-0.20.5
Delay discounting water rate 12 sec2.33.45.0-1.9-1.8-1.4-2.2
Delay discounting water rate 18 sec0.71.01.0-1.0-1.0-1.0-1.0
Delay discounting water rate 24 sec0.10.10.30.10.10.50.4
Delay discounting water rate 6 sec1.42.12.3-1.5-1.4-1.5-1.4
Locomotor activity0.81.32.8-1.1-1.1-1.70.2
Locomotor testing distance0.10.20.6-0.1-0.1-0.50.8
Locomotor testing rearing0.71.22.5-1.0-1.1-1.6-0.2
Light reinforcement 11.12.03.61.31.30.91.9
Light reinforcement 20.00.00.10.40.20.1-0.1
Reaction time number correct0.60.91.3-1.0-1.1-1.0-0.3
Reaction time mean minus median1.51.92.9-1.5-1.4-1.7-0.8
Reaction time mean minus median AUC1.51.93.2-1.4-1.4-1.8-0.5
Reaction time num false alarms1.52.04.11.01.11.32.0
Reaction time num false alarms AUC2.23.15.81.41.41.72.4
Reaction time trials correct on left0.60.91.3-1.0-1.1-1.0-0.3
Reaction time trials on left0.70.91.4-1.0-1.2-1.1-0.3
Reaction time mean3.44.66.1-1.9-2.0-2.5-2.1
Reaction time mean AUC2.63.45.0-1.6-1.7-2.2-1.8
Median of all reaction times3.04.04.9-1.8-1.8-2.2-2.2
Reaction time omissions0.00.00.10.20.0-0.00.1
Reaction time false alarm rate2.13.04.51.51.61.72.1
Reaction time premature initiation rate3.24.35.72.22.22.41.3
Reaction time premature initiations1.52.12.91.51.51.71.0
Std. dev. reaction times1.52.13.4-1.4-1.4-1.8-1.1
Reaction time trials completed0.70.91.4-1.0-1.2-1.1-0.3
Reaction time trials AUC0.71.11.5-1.1-1.2-1.2-0.4
Social response proportion0.20.20.3-0.6-0.4-0.6-0.3
Social responses0.30.40.8-0.6-0.4-0.90.5
Social time0.30.40.8-0.2-0.5-0.90.7
Conditioned locomotion0.80.91.3-1.1-0.9-0.9-0.8
Cocaine response after cond. corrected0.00.00.1-0.2-0.2-0.30.0
Cocaine response after cond. not corrected0.20.20.3-0.5-0.4-0.4-0.4
Cocaine response before conditioning0.10.10.20.30.30.50.0
Saline control response1.11.52.01.41.11.11.2
Condit. Reinf. active minus inactive responses0.30.30.70.30.50.80.4
Condit. Reinf. active-inactive response ratio0.20.20.3-0.6-0.4-0.1-0.4
Condit. Reinf. active responses0.10.10.20.10.30.50.1
Condit. Reinf. inactive responses0.10.20.30.50.40.30.4
Condit. Reinf. lever presses0.70.91.20.91.01.10.8
Condit. Reinf. lever reinforcers received0.10.10.2-0.4-0.2-0.0-0.4
Pavlov. Cond. lever latency1.21.72.3-1.2-1.3-1.5-1.1
Pavlov. Cond. magazine entry latency0.50.51.00.60.81.00.3
Pavlov. Cond. change in total contacts0.60.91.50.71.01.20.6
Pavlov. Cond. index score0.91.21.90.91.21.40.7
Pavlov. Cond. latency score1.82.23.41.31.61.81.1
Pavlov. Cond. lever contacts0.91.31.91.11.21.40.9
Pavlov. Cond. magazine entry number0.20.20.5-0.2-0.5-0.70.1
Pavlov. Cond. intertrial magazine entries0.20.20.4-0.3-0.5-0.70.0
Pavlov. Cond. lever-magazine prob. diff.1.01.32.11.01.21.50.7
Pavlov. Cond. response bias0.60.81.20.80.91.10.6
Conditioned reinforcement - actives0.70.71.40.70.71.20.7
Conditioned reinforcement - inactives6.67.49.42.62.63.12.6
Conditioned locomotion1.21.42.11.11.11.51.1
Intermittent access intake day 1-15 change2.62.54.41.31.52.11.3
Intermittent access intake escalation2.52.43.91.31.52.01.3
Intermittent access intake escalation 23.43.45.51.61.72.31.6
Intermitt. access day 1 inactive lever presses7.17.79.22.72.73.02.7
Intermitt. access day 15 inactive lever presses2.93.23.61.91.81.61.8
Intermitt. access escalation Index3.02.77.01.21.22.61.1
Intermittent access day 1 total infusions0.10.10.20.30.20.40.4
Intermittent access day 15 total infusions0.50.61.20.70.61.10.6
Intermittent access terminal intake (last 3 days)1.61.73.01.21.11.71.1
Intermittent access total infusions0.91.01.70.90.71.30.9
Intermittent access day 1 locomotion0.91.01.51.00.81.20.9
Intermittent access day 15 total locomotion3.13.33.91.81.72.01.7
Intermittent access total locomotion2.83.23.61.91.61.91.8
Intermittent access standard deviation2.32.43.61.41.41.91.4
Cocaine induced anxiety0.60.70.90.81.00.80.8
Post-drug Anxiety0.20.20.20.40.5-0.40.5
Baseline Anxiety0.10.10.3-0.2-0.5-0.5-0.2
Lifetime Intake0.70.81.40.80.71.20.8
Incentive Sensitization - Responses1.91.93.01.31.11.71.3
Incentive Sensitization - Breakpoint2.02.03.11.31.11.81.3
Progressive ratio test 1 active lever presses0.00.00.0-0.0-0.00.1-0.0
Progressive ratio test 1 breakpoint0.00.00.10.10.10.40.1
Progressive ratio test 1 inactive lever presses3.73.95.61.81.92.41.7
Progressive ratio test 2 active lever presses0.80.91.50.90.71.20.8
Progressive ratio test 2 breakpoint0.70.81.50.80.71.20.8
Progressive ratio test 2 inactive lever presses0.70.81.20.90.81.10.8
Total sessions with >9 infusions3.33.64.71.71.92.21.7
Short access day 1 total inactive lever presses1.21.32.01.01.11.41.0
Short access day 10 total inactive lever presses5.96.57.32.62.42.72.5
Short access day 1 total infusions0.60.60.90.60.91.00.6
Short access day 10 total infusions1.31.41.81.21.01.31.2
Short access total infusions0.60.61.20.60.71.10.7
Short access day 1 locomotion7.68.112.22.62.73.52.5
Short access day 10 total locomotion3.23.55.21.81.82.31.7
Short access total locomotion6.46.610.92.22.43.32.2
Compulsive drug intake0.30.30.50.70.50.10.6
One hour access (0.3 mA shock)1.31.51.61.31.21.21.2
One hour access (shock baseline)1.41.63.01.11.11.71.1
Number of responses in last shaping day0.30.30.8-0.4-0.3-0.9-0.5
Context. condit. distance diff. score4.15.06.32.22.12.52.1
Locomotion velocity, session 14.54.96.82.22.22.61.7
Locomotion distance, session 11.92.52.81.61.51.51.7
Locomotion velocity, session 20.60.70.90.90.81.00.6
Locomotion distance, session 20.10.10.20.40.30.20.3
Locomotion velocity, session 30.10.10.20.40.20.30.1
Locomotion distance, session 30.10.10.20.40.00.00.4
Stereotopy head waving bouts, day 30.60.71.1-0.9-0.7-0.6-1.1
Stereotopy head waving duration, day 30.10.10.3-0.4-0.2-0.1-0.5
Locomotion velocity, session 73.03.33.92.01.81.91.7
Locomotion distance, session 74.75.96.72.62.42.52.3
Stereotopy head waving bouts, day 70.10.10.40.10.40.60.1
Stereotopy head waving duration, day 70.40.50.8-0.9-0.6-0.5-0.7
Locomotion velocity, session 82.02.42.81.61.51.71.3
Locomotion distance, session 83.95.97.02.52.32.62.2
Degree of sensitization distance2.42.43.31.51.71.81.2
Degree of sensitization stereotypy0.10.10.30.20.40.50.3
Condit. Reinf. active minus inactive responses0.00.00.0-0.0-0.0-0.10.0
Condit. Reinf. active-inactive response ratio0.91.01.2-1.1-0.9-0.9-1.1
Condit. Reinf. active responses1.21.51.71.21.21.21.3
Condit. Reinf. inactive responses4.24.95.62.22.22.12.4
Incentive salience index mean0.00.00.00.0-0.0-0.10.2
Condit. Reinf. lever presses0.20.20.40.50.40.30.6
Time in familiar zone, hab. session 11.71.61.71.21.31.31.3
Time in novel zone, hab. session 10.70.70.7-0.8-0.8-0.8-0.8
Total zone transitions, hab. session 10.20.20.40.60.40.30.6
Total locomotion distance, hab. session 10.00.00.10.0-0.1-0.30.1
Locomotion velocity, hab. session 10.00.00.10.20.20.00.3
Time in familiar zone, hab. session 21.71.72.81.21.41.70.9
Time in novel zone, hab. session 21.01.01.5-0.9-1.0-1.2-0.7
Total zone transitions, hab. session 21.11.42.01.31.10.91.4
Total locomotion distance, hab. session 20.30.40.70.70.60.50.8
Locomotion velocity, hab. session 20.10.20.40.50.30.20.6
Novel to familiar place preference ratio3.94.14.62.12.01.92.0
Novelty place preference4.54.65.22.32.12.12.1
Time in novel zone, NPP test5.15.35.92.42.32.32.2
Total zone transitions, NPP test2.13.03.71.81.61.51.9
Total locomotion distance, NPP test0.70.91.31.00.90.81.2
Locomotion velocity, NPP test0.40.50.90.80.60.50.9
Pavlov. Cond. lever latency2.63.34.41.62.02.11.5
Pavlov. Cond. magazine entry latency5.47.010.0-2.4-2.8-3.2-2.1
Pavlov. Cond. change in total contacts4.24.56.7-1.9-2.3-2.6-1.7
Pavlov. Cond. index score6.17.710.6-2.5-2.9-3.2-2.3
Pavlov. Cond. latency score5.16.59.0-2.3-2.7-3.0-2.1
Pavlov. Cond. lever contacts5.05.96.8-2.2-2.5-2.6-2.3
Pavlov. Cond. magazine entry number5.26.59.12.42.73.02.0
Pavlov. Cond. intertrial magazine entries9.611.512.13.33.43.43.5
Pavlov. Cond. lever-magazine prob. diff.6.17.710.5-2.5-2.9-3.2-2.3
Pavlov. Cond. response bias4.45.47.5-2.1-2.4-2.7-1.9
Bone: apparent density0.10.20.3-0.5-0.5-0.5-0.4
Bone surface0.10.20.3-0.3-0.5-0.5-0.2
Bone volume0.00.10.10.20.20.30.3
Bone: connectivity density2.84.55.6-2.1-2.1-2.4-1.8
Bone: cortical apparent density1.62.12.4-1.6-1.3-1.4-1.4
Bone: cortical area0.81.21.91.10.90.81.4
Bone: cortical porosity0.70.81.1-0.8-0.9-1.0-0.8
Bone: cortical porosity0.10.10.2-0.2-0.4-0.5-0.2
Bone: cortical thickness0.00.00.10.2-0.0-0.20.3
Bone: cortical thickness0.20.20.3-0.4-0.4-0.4-0.5
Bone: cortical tissue density1.52.02.4-1.5-1.3-1.4-1.4
Bone: elastic displacement1.01.21.71.01.11.30.8
Bone: elastic work0.91.21.41.11.01.01.2
Bone: endosteal estimation1.73.64.11.81.92.01.9
Bone: endosteal perimeter1.93.94.52.01.91.92.1
Bone: final force0.10.20.30.50.40.30.6
Bone: final moment0.30.50.70.70.60.50.8
Bone: marrow area1.53.23.71.71.81.91.8
Bone: maximum diameter1.93.54.71.91.71.72.2
Bone: maximum force1.52.63.41.71.51.41.8
Bone: maximum moment1.83.14.11.91.61.52.0
Bone: minimum diameter0.81.51.71.31.21.11.3
Bone: periosteal estimation1.63.23.91.81.71.72.0
Bone: periosteal perimeter2.64.35.52.11.91.82.4
Bone: post-yield work4.25.76.92.52.22.12.6
Bone: stiffness0.00.00.2-0.1-0.2-0.40.1
Bone: tissue strength0.10.10.20.30.2-0.00.5
Bone: trabecular number1.11.72.1-1.2-1.3-1.4-1.1
Bone: trabecular spacing2.12.84.71.41.72.21.2
Bone: trabecular thickness0.70.91.2-0.9-1.0-1.1-0.8
Bone: trabecular tissue density0.30.50.70.70.70.80.4
Breakpoint value in progressive ratio session0.20.20.7-0.2-0.2-0.80.2
Distance traveled before self-admin0.40.51.00.50.80.21.0
Distance traveled after self-admin0.80.91.80.70.90.51.3
Delta time in closed arm before/after self-admin0.00.00.10.10.30.30.2
Delta time in open arm before/after self-admin0.50.50.60.70.80.50.8
Diff in mean of infusions in LGA sessions0.50.50.60.80.80.50.8
Extinction: sum of active levers before priming0.40.40.60.50.80.80.4
Active lever presses in extinction session 60.10.10.2-0.1-0.4-0.4-0.3
Delta distance traveled before/after self-admin0.00.00.1-0.10.00.3-0.0
Delta ambulatory time before/after self-admin0.20.20.2-0.5-0.4-0.3-0.5
Time in closed arm before self-admin0.00.00.10.2-0.1-0.20.1
Time in closed arm after self-admin0.30.30.4-0.5-0.6-0.6-0.5
Time in open arm before self-admin0.40.40.7-0.7-0.5-0.4-0.8
Time in open arm after self-admin1.41.51.81.11.31.11.3
Sum of active levers in priming session hrs 5-61.61.62.5-1.1-1.3-1.6-1.0
Time to tail flick, vehicle, before self-admin1.61.63.0-1.2-1.2-1.7-0.9
Time to tail flick, vehicle, after self-admin0.70.70.9-0.9-1.0-0.5-1.0
Time to tail flick, test, before self-admin0.90.91.3-1.0-1.1-0.8-0.8
Time to tail flick, test, after self-admin2.93.04.6-1.6-1.7-1.3-2.1
Delta time to tail flick, vehicle, before/after SA0.80.82.20.70.71.50.3
Delta time to tail flick, test, before/after SA0.30.20.6-0.3-0.3-0.5-0.8
Ambulatory time before self-admin0.20.20.50.20.4-0.70.2
Ambulatory time after self-admin0.20.20.60.10.2-0.30.8
Total heroin consumption0.30.30.50.60.4-0.70.7
Area under the delay curve6.67.17.62.72.72.52.7
Delay disc. indifference point, 0s delay2.83.04.11.82.01.21.8
Delay disc. indifference point, 16s delay6.36.47.32.42.52.72.5
Delay disc. indifference point, 2s delay3.43.84.21.92.11.92.0
Delay disc. indifference point, 24s delay6.05.88.02.22.22.82.3
Delay disc. indifference point, 4s delay2.22.32.51.51.51.61.5
Delay disc. indifference point, 8s delay4.34.45.52.32.21.42.3
Delay discount exponential model param6.77.07.5-2.7-2.6-2.6-2.7
Delay discount hyperbolic model param7.07.57.8-2.7-2.7-2.7-2.8
Fecal boli incidents, locomotor time 10.10.10.20.20.40.40.3
Change in fecal boli incidents, locomotor task0.20.20.50.2-0.2-0.70.2
Time >=10cm from walls, locomotor time 10.30.30.5-0.7-0.6-0.1-0.6
Bouts of movement, locomotor time 12.62.95.71.31.52.41.4
Total resting periods, locomotor time 12.62.85.51.31.52.41.3
Rest time, locomotor task time 10.30.30.90.20.50.90.2
Distance moved, locomotor task time 10.10.10.10.1-0.3-0.40.1
Vertical activity count, locomotor time 10.50.60.90.90.60.50.9
Time >=10cm from walls, locomotor time 20.50.61.0-0.8-0.6-0.4-1.0
Bouts of movement, locomotor time 20.90.91.21.11.00.71.0
Total resting periods, locomotor time 20.70.70.91.00.90.50.9
Rest time, locomotor task time 22.83.33.7-1.8-1.7-1.9-1.8
Distance moved, locomotor task time 20.70.80.91.00.91.00.9
Vertical activity count, locomotor time 23.03.34.21.71.82.01.7
Weight adjusted by age4.04.58.2-1.6-2.0-2.9-1.7
Seeking ratio, delayed vs. immediate footshock1.72.03.31.11.41.81.3
Locomotion in novel chamber0.20.20.80.30.1-0.90.2
Locomotion in novel chamber post-restriction0.20.20.6-0.1-0.5-0.8-0.3
Progressive ratio0.30.40.60.80.6-0.10.8
Food seeking constrained by brief footshock1.31.61.8-1.3-1.1-1.3-1.3
Seeking ratio, punishment vs. effort1.01.31.9-1.4-1.0-0.5-1.4
Run reversals in cocaine runway, females1.71.72.11.31.31.41.2
Run reversals in cocaine runway, males1.00.91.2-1.0-0.8-1.1-0.9
Latency to leave start box in cocaine runway0.00.00.10.20.10.10.3
Latency to leave start box in cocaine runway, F0.60.70.9-0.8-0.8-0.9-0.8
Latency to leave start box in cocaine runway, M2.52.42.61.61.41.51.6
Cd content in liver2.83.13.51.91.81.81.5
Co content in liver0.20.20.30.40.40.50.5
Cu content in liver0.40.50.70.60.80.80.5
Fe content in liver1.11.31.61.31.11.11.0
K content in liver9.99.910.8-3.1-3.1-3.3-3.0
Mg content in liver1.71.82.3-1.4-1.3-1.1-1.5
Mn content in liver7.38.49.4-2.8-3.0-2.7-3.1
Na content in liver0.70.71.20.70.81.10.7
Rb content in liver1.31.71.8-1.2-1.4-1.3-1.3
Se content in liver0.40.50.80.70.70.90.5
Sr content in liver0.40.40.8-0.7-0.5-0.3-0.9
Zn content in liver0.91.01.90.81.11.40.5