ENSRNOG00000070264

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression ENSRNOG00000070264 0.02 0.02 4.7e-03 0 0.01 0 0 1.3e-01 4.7e-02 2.0e-01 2.1e-01
2 Liver intron excision ratio chr7:10167304:10167452 0.02 0.02 6.4e-03 0.01 0.02 0.02 0.01 1.1e-02 5.4e-03 3.7e-03 6.7e-03
3 Liver intron excision ratio chr7:10167304:10167763 0.02 0.02 1.4e-03 0.01 0.02 0.02 0.01 2.9e-02 3.0e-03 4.9e-03 8.6e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail6.621.523.0-4.8-4.44.7
BMI without tail2.75.68.1-2.2-2.82.0
Body weight1.25.05.4-2.2-2.32.2
Epididymis fat weight0.30.60.60.80.8-0.8
Glucose1.62.42.9-1.7-1.21.7
Heart weight0.20.20.60.30.7-0.3
Left kidney weight0.00.00.10.20.2-0.1
Right kidney weight1.23.33.61.91.6-1.9
Tail length3.09.111.23.32.2-3.3
Length with tail1.96.87.62.82.3-2.7
Length without tail0.10.20.50.40.7-0.3
Liver weight, left2.13.33.4-1.8-1.81.8
Liver weight, right1.42.32.4-1.5-1.51.5
Parametrial fat weight0.30.70.90.90.6-0.9
Retroperitoneal fat weight0.20.70.7-0.8-0.90.8
Intraocular pressure0.00.00.0-0.2-0.20.1
Extensor digitorum longus weight4.718.924.7-4.1-5.03.9
Soleus weight9.226.728.3-5.3-4.95.3
Tibialis anterior weight1.13.75.1-1.8-2.31.7
Tibia length0.82.22.71.61.1-1.6
Number of licking bursts0.10.20.4-0.2-0.70.1
Food consumed during 24 hour testing period0.70.81.0-0.9-1.00.8
Times rat made contact with spout0.30.40.8-0.5-0.90.4
Mean time between licks in bursts4.05.56.22.52.1-2.5
Mean num. licks in bursts0.00.00.0-0.2-0.00.2
Std. dev. time between licks in bursts0.60.80.90.90.8-0.9
Water consumed over 24 hours0.60.70.8-0.8-0.90.9
Indifference point 0 sec0.20.30.4-0.6-0.30.6
Indifference point AUC0.70.80.80.90.9-0.9
Indifference point function ln k0.30.40.6-0.6-0.80.5
Indifference point function log k0.30.40.6-0.6-0.80.5
Delay discounting total patch changes 0 sec0.10.20.2-0.5-0.40.5
Delay discounting total patch changes 12 sec0.50.60.8-0.7-0.90.7
Delay discounting total patch changes 18 sec1.01.31.31.21.2-1.1
Delay discounting total patch changes 24 sec0.10.10.20.10.5-0.1
Delay discounting total patch changes 6 sec0.10.20.50.20.7-0.2
Delay discounting time to switch 0 sec0.60.91.3-1.0-0.51.1
Delay discounting water rate 0 sec0.20.41.1-0.0-1.1-0.1
Delay discounting water rate 12 sec1.42.13.2-1.3-1.81.2
Delay discounting water rate 18 sec0.30.41.10.1-1.1-0.3
Delay discounting water rate 24 sec0.91.23.0-0.7-1.70.4
Delay discounting water rate 6 sec0.20.30.40.5-0.4-0.6
Locomotor activity2.94.65.02.22.1-2.1
Locomotor testing distance1.72.83.21.61.8-1.6
Locomotor testing rearing0.00.00.10.1-0.3-0.2
Light reinforcement 16.712.312.73.53.6-3.4
Light reinforcement 22.33.03.61.71.9-1.6
Reaction time number correct0.81.12.2-0.8-1.50.6
Reaction time mean minus median0.50.70.80.90.7-0.9
Reaction time mean minus median AUC0.00.00.10.10.3-0.1
Reaction time num false alarms0.40.51.5-0.3-1.20.2
Reaction time num false alarms AUC0.50.71.9-0.4-1.40.2
Reaction time trials correct on left0.81.12.2-0.8-1.50.6
Reaction time trials on left0.81.12.1-0.8-1.50.7
Reaction time mean0.00.10.1-0.30.00.3
Reaction time mean AUC0.10.10.2-0.40.00.4
Median of all reaction times0.30.40.6-0.8-0.30.8
Reaction time omissions0.30.41.10.31.0-0.2
Reaction time false alarm rate0.10.10.3-0.1-0.60.1
Reaction time premature initiation rate0.81.11.11.01.0-1.1
Reaction time premature initiations0.30.40.70.70.3-0.8
Std. dev. reaction times0.10.10.10.30.3-0.4
Reaction time trials completed0.81.12.1-0.8-1.50.7
Reaction time trials AUC0.81.12.4-0.8-1.50.6
Social response proportion0.80.91.50.81.2-0.7
Social responses6.78.69.13.02.9-2.9
Social time0.50.71.0-1.0-0.31.0
Conditioned locomotion1.72.03.0-1.3-1.71.2
Cocaine response after cond. corrected6.27.07.9-2.6-2.82.5
Cocaine response after cond. not corrected6.57.28.5-2.6-2.92.5
Cocaine response before conditioning0.60.70.91.00.5-1.0
Saline control response0.00.10.1-0.3-0.20.2
Condit. Reinf. active minus inactive responses1.41.82.21.41.1-1.5
Condit. Reinf. active-inactive response ratio0.10.10.1-0.30.20.2
Condit. Reinf. active responses1.52.02.51.51.1-1.6
Condit. Reinf. inactive responses1.11.42.01.40.5-1.4
Condit. Reinf. lever presses1.82.52.91.61.3-1.7
Condit. Reinf. lever reinforcers received0.91.31.81.30.8-1.3
Pavlov. Cond. lever latency0.40.60.7-0.8-0.60.8
Pavlov. Cond. magazine entry latency0.40.50.70.80.4-0.8
Pavlov. Cond. change in total contacts0.30.50.50.70.7-0.7
Pavlov. Cond. index score0.50.70.90.90.6-0.9
Pavlov. Cond. latency score0.50.60.70.80.7-0.8
Pavlov. Cond. lever contacts0.40.50.70.80.5-0.8
Pavlov. Cond. magazine entry number0.70.81.1-1.0-0.51.1
Pavlov. Cond. intertrial magazine entries0.40.50.8-0.6-0.90.5
Pavlov. Cond. lever-magazine prob. diff.0.60.70.90.90.6-1.0
Pavlov. Cond. response bias1.21.62.11.41.0-1.4
Conditioned reinforcement - actives2.02.02.01.41.4-1.4
Conditioned reinforcement - inactives0.30.40.5-0.6-0.70.5
Conditioned locomotion7.18.59.13.02.8-3.0
Intermittent access intake day 1-15 change5.85.76.52.52.0-2.5
Intermittent access intake escalation4.94.86.12.41.6-2.5
Intermittent access intake escalation 25.95.87.02.62.0-2.6
Intermitt. access day 1 inactive lever presses0.10.10.10.3-0.1-0.3
Intermitt. access day 15 inactive lever presses0.50.60.70.80.5-0.9
Intermitt. access escalation Index0.10.10.2-0.4-0.10.4
Intermittent access day 1 total infusions0.00.00.0-0.10.10.1
Intermittent access day 15 total infusions1.92.12.51.61.2-1.6
Intermittent access terminal intake (last 3 days)1.01.11.31.10.9-1.1
Intermittent access total infusions0.20.30.30.60.4-0.6
Intermittent access day 1 locomotion0.50.50.60.80.6-0.8
Intermittent access day 15 total locomotion3.94.24.62.11.8-2.1
Intermittent access total locomotion1.11.31.31.11.1-1.1
Intermittent access standard deviation2.22.43.01.71.2-1.7
Cocaine induced anxiety0.60.71.30.71.1-0.6
Post-drug Anxiety0.70.81.30.81.1-0.7
Baseline Anxiety0.20.20.30.50.0-0.6
Lifetime Intake0.10.10.10.40.3-0.4
Incentive Sensitization - Responses0.00.00.00.10.0-0.1
Incentive Sensitization - Breakpoint0.00.00.10.20.2-0.2
Progressive ratio test 1 active lever presses0.10.10.2-0.0-0.4-0.1
Progressive ratio test 1 breakpoint0.10.10.3-0.1-0.60.0
Progressive ratio test 1 inactive lever presses0.10.10.10.30.3-0.3
Progressive ratio test 2 active lever presses0.10.10.10.30.1-0.4
Progressive ratio test 2 breakpoint0.20.20.20.40.4-0.4
Progressive ratio test 2 inactive lever presses0.10.10.20.20.4-0.2
Total sessions with >9 infusions0.00.00.0-0.10.00.2
Short access day 1 total inactive lever presses0.20.20.20.40.5-0.4
Short access day 10 total inactive lever presses0.00.00.0-0.0-0.10.0
Short access day 1 total infusions0.30.40.70.50.8-0.4
Short access day 10 total infusions0.10.10.20.4-0.0-0.4
Short access total infusions0.00.00.00.10.1-0.0
Short access day 1 locomotion1.11.21.41.11.2-1.0
Short access day 10 total locomotion3.43.74.42.11.5-2.1
Short access total locomotion0.90.91.01.00.9-1.0
Compulsive drug intake1.31.31.6-1.2-0.81.3
One hour access (0.3 mA shock)0.10.10.1-0.3-0.40.2
One hour access (shock baseline)0.10.20.30.5-0.0-0.5
Number of responses in last shaping day0.10.10.20.40.4-0.4
Context. condit. distance diff. score0.20.30.9-0.2-0.90.1
Locomotion velocity, session 10.70.71.60.61.2-0.5
Locomotion distance, session 10.40.50.70.70.8-0.5
Locomotion velocity, session 24.95.86.42.52.3-2.4
Locomotion distance, session 22.02.95.51.32.3-1.1
Locomotion velocity, session 36.77.89.63.12.1-3.1
Locomotion distance, session 30.00.10.10.2-0.3-0.2
Stereotopy head waving bouts, day 36.17.38.32.92.4-2.8
Stereotopy head waving duration, day 36.88.29.23.02.5-3.0
Locomotion velocity, session 70.91.01.51.2-0.2-1.2
Locomotion distance, session 70.40.51.3-0.3-1.20.2
Stereotopy head waving bouts, day 70.10.10.20.30.5-0.2
Stereotopy head waving duration, day 70.40.50.90.60.9-0.5
Locomotion velocity, session 80.91.11.41.20.9-1.1
Locomotion distance, session 80.30.50.60.80.5-0.7
Degree of sensitization distance0.40.40.8-0.5-0.90.5
Degree of sensitization stereotypy1.61.72.3-1.5-0.91.5
Condit. Reinf. active minus inactive responses5.25.86.42.52.1-2.5
Condit. Reinf. active-inactive response ratio2.02.22.41.51.4-1.5
Condit. Reinf. active responses4.65.65.92.42.3-2.3
Condit. Reinf. inactive responses1.21.41.91.11.4-1.0
Incentive salience index mean3.13.84.22.01.8-2.0
Condit. Reinf. lever presses0.20.20.70.20.8-0.0
Time in familiar zone, hab. session 12.01.92.31.51.1-1.5
Time in novel zone, hab. session 11.01.01.3-1.1-0.61.2
Total zone transitions, hab. session 11.31.82.51.31.6-1.1
Total locomotion distance, hab. session 11.52.22.41.51.5-1.4
Locomotion velocity, hab. session 12.13.03.41.91.7-1.7
Time in familiar zone, hab. session 25.96.16.82.52.3-2.6
Time in novel zone, hab. session 24.54.65.3-2.3-1.82.3
Total zone transitions, hab. session 20.20.20.4-0.20.70.4
Total locomotion distance, hab. session 21.52.03.11.31.8-1.1
Locomotion velocity, hab. session 21.62.13.51.31.9-1.1
Novel to familiar place preference ratio3.94.05.3-2.2-1.42.3
Novelty place preference2.32.43.2-1.7-1.01.8
Time in novel zone, NPP test2.62.73.5-1.8-1.21.9
Total zone transitions, NPP test0.20.30.80.00.90.1
Total locomotion distance, NPP test0.10.10.30.20.5-0.0
Locomotion velocity, NPP test0.20.30.70.40.9-0.2
Pavlov. Cond. lever latency0.10.10.2-0.50.10.4
Pavlov. Cond. magazine entry latency4.05.16.42.51.6-2.5
Pavlov. Cond. change in total contacts0.40.40.60.8-0.1-0.8
Pavlov. Cond. index score1.01.31.91.40.5-1.3
Pavlov. Cond. latency score1.01.31.81.40.6-1.3
Pavlov. Cond. lever contacts0.20.30.40.70.2-0.5
Pavlov. Cond. magazine entry number1.31.62.1-1.5-0.81.4
Pavlov. Cond. intertrial magazine entries0.00.00.10.20.0-0.3
Pavlov. Cond. lever-magazine prob. diff.1.51.82.61.60.8-1.5
Pavlov. Cond. response bias1.82.23.01.70.9-1.7
Bone: apparent density0.30.40.7-0.40.80.6
Bone surface0.61.02.90.21.70.1
Bone volume0.50.82.40.11.50.2
Bone: connectivity density0.30.40.7-0.70.30.9
Bone: cortical apparent density1.11.41.9-1.4-0.61.4
Bone: cortical area0.50.70.9-0.9-0.71.0
Bone: cortical porosity0.50.50.80.70.9-0.6
Bone: cortical porosity0.10.10.30.10.5-0.0
Bone: cortical thickness1.11.92.3-1.5-1.11.5
Bone: cortical thickness0.10.10.3-0.2-0.50.1
Bone: cortical tissue density0.81.01.4-1.2-0.51.2
Bone: elastic displacement0.20.20.50.10.7-0.1
Bone: elastic work0.40.50.7-0.8-0.30.8
Bone: endosteal estimation0.10.30.5-0.4-0.70.4
Bone: endosteal perimeter0.30.60.70.90.7-0.8
Bone: final force1.32.12.4-1.4-1.51.4
Bone: final moment1.01.71.7-1.3-1.31.3
Bone: marrow area0.10.30.5-0.4-0.70.4
Bone: maximum diameter0.71.41.51.21.2-1.1
Bone: maximum force1.32.22.7-1.4-1.61.4
Bone: maximum moment1.01.82.0-1.3-1.41.3
Bone: minimum diameter0.00.10.10.2-0.3-0.2
Bone: periosteal estimation0.20.40.5-0.6-0.60.7
Bone: periosteal perimeter0.10.10.10.30.3-0.3
Bone: post-yield work0.60.92.2-0.5-1.50.4
Bone: stiffness2.74.35.4-1.9-2.31.9
Bone: tissue strength1.81.82.1-1.4-1.01.5
Bone: trabecular number0.71.11.70.91.3-0.8
Bone: trabecular spacing0.81.12.6-0.7-1.60.4
Bone: trabecular thickness0.60.71.4-0.41.20.7
Bone: trabecular tissue density1.62.23.1-1.4-1.81.3
Breakpoint value in progressive ratio session5.15.76.72.52.0-2.6
Distance traveled before self-admin0.70.71.0-1.0-0.61.0
Distance traveled after self-admin0.40.50.60.70.7-0.6
Delta time in closed arm before/after self-admin1.51.52.8-0.9-1.70.8
Delta time in open arm before/after self-admin1.11.11.5-1.2-0.51.2
Diff in mean of infusions in LGA sessions1.92.22.41.61.3-1.6
Extinction: sum of active levers before priming1.01.11.51.20.5-1.2
Active lever presses in extinction session 62.62.53.31.51.8-1.4
Delta distance traveled before/after self-admin2.02.12.51.61.2-1.6
Delta ambulatory time before/after self-admin2.32.52.81.71.4-1.6
Time in closed arm before self-admin0.50.50.9-0.8-0.21.0
Time in closed arm after self-admin0.00.00.00.0-0.1-0.0
Time in open arm before self-admin0.80.81.11.00.6-1.0
Time in open arm after self-admin0.80.81.0-1.0-0.71.0
Sum of active levers in priming session hrs 5-60.00.00.0-0.00.00.0
Time to tail flick, vehicle, before self-admin0.70.81.30.71.1-0.7
Time to tail flick, vehicle, after self-admin0.10.10.20.4-0.0-0.5
Time to tail flick, test, before self-admin0.20.20.30.40.6-0.3
Time to tail flick, test, after self-admin0.30.30.30.60.5-0.5
Delta time to tail flick, vehicle, before/after SA0.70.71.6-0.6-1.30.5
Delta time to tail flick, test, before/after SA0.20.20.20.40.4-0.5
Ambulatory time before self-admin0.60.70.9-0.9-0.41.0
Ambulatory time after self-admin0.20.20.20.50.4-0.4
Total heroin consumption2.02.52.51.61.6-1.5
Area under the delay curve2.22.42.5-1.6-1.51.6
Delay disc. indifference point, 0s delay6.06.69.0-2.8-1.63.0
Delay disc. indifference point, 16s delay0.10.10.1-0.3-0.20.3
Delay disc. indifference point, 2s delay5.15.76.3-2.5-2.12.5
Delay disc. indifference point, 24s delay0.90.91.0-1.0-0.91.0
Delay disc. indifference point, 4s delay0.70.70.8-0.9-0.80.9
Delay disc. indifference point, 8s delay1.71.72.6-1.2-1.61.1
Delay discount exponential model param2.12.22.31.51.5-1.5
Delay discount hyperbolic model param2.93.13.21.81.7-1.8
Fecal boli incidents, locomotor time 11.82.02.6-1.3-1.61.3
Change in fecal boli incidents, locomotor task0.10.10.10.40.1-0.3
Time >=10cm from walls, locomotor time 10.90.91.4-1.1-0.41.2
Bouts of movement, locomotor time 10.40.40.60.7-0.3-0.8
Total resting periods, locomotor time 10.40.40.70.8-0.0-0.8
Rest time, locomotor task time 10.60.61.01.00.0-1.0
Distance moved, locomotor task time 10.91.01.6-1.20.01.3
Vertical activity count, locomotor time 10.50.60.9-0.9-0.20.9
Time >=10cm from walls, locomotor time 22.12.32.8-1.4-1.71.4
Bouts of movement, locomotor time 20.80.81.50.81.2-0.7
Total resting periods, locomotor time 20.70.71.30.71.2-0.6
Rest time, locomotor task time 20.60.70.70.80.8-0.8
Distance moved, locomotor task time 20.80.91.0-0.9-1.00.9
Vertical activity count, locomotor time 20.91.01.6-0.9-1.30.8
Weight adjusted by age0.70.71.2-0.8-1.10.7
Seeking ratio, delayed vs. immediate footshock4.45.15.42.32.1-2.3
Locomotion in novel chamber0.00.00.10.20.1-0.3
Locomotion in novel chamber post-restriction0.91.01.61.20.3-1.3
Progressive ratio0.10.10.4-0.2-0.60.2
Food seeking constrained by brief footshock0.50.60.91.00.4-0.9
Seeking ratio, punishment vs. effort0.30.40.40.60.6-0.6
Run reversals in cocaine runway, females0.50.50.60.80.5-0.7
Run reversals in cocaine runway, males1.61.61.81.21.3-1.2
Latency to leave start box in cocaine runway0.80.92.40.41.6-0.2
Latency to leave start box in cocaine runway, F0.50.60.7-0.70.80.8
Latency to leave start box in cocaine runway, M2.32.22.91.61.0-1.7
Cd content in liver0.30.30.4-0.6-0.40.6
Co content in liver0.60.70.90.90.4-1.0
Cu content in liver0.00.00.1-0.2-0.10.3
Fe content in liver0.20.30.30.6-0.5-0.6
K content in liver0.10.10.10.4-0.3-0.3
Mg content in liver0.00.00.00.1-0.1-0.0
Mn content in liver1.31.41.81.31.1-1.2
Na content in liver0.50.61.0-0.5-1.00.6
Rb content in liver0.20.30.5-0.6-0.20.7
Se content in liver0.50.61.01.0-0.0-1.0
Sr content in liver0.00.00.10.1-0.2-0.2
Zn content in liver1.21.31.81.20.7-1.3