ENSRNOG00000069975

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000069975 0.24 0.13 5.1e-07 0.03 0.04 0.04 0.02 5.7e-04 1.4e-05 1.7e-05 2.4e-03
2 BLA gene expression ENSRNOG00000069975 0.66 0.13 6.1e-06 0 0.07 0.05 0.01 3.2e-01 9.0e-05 8.3e-04 9.8e-02
3 Brain gene expression ENSRNOG00000069975 0.09 0.07 3.8e-09 0.1 0.09 0.09 0.09 2.7e-09 6.6e-09 2.5e-08 2.6e-08
4 PL gene expression ENSRNOG00000069975 0.18 0.12 1.5e-04 0.04 0.05 0.06 0.06 8.8e-04 1.4e-04 4.7e-05 3.0e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail2.99.416.5-4.1-2.0-3.0-2.9
BMI without tail2.65.58.6-2.9-2.4-1.9-2.0
Body weight4.519.124.5-5.0-3.7-4.4-4.3
Epididymis fat weight0.10.30.5-0.20.40.70.7
Glucose1.42.14.00.30.82.02.0
Heart weight0.91.22.1-1.4-1.40.70.5
Left kidney weight0.20.61.5-1.2-0.7-0.5-0.4
Right kidney weight0.10.40.9-0.9-0.3-0.5-0.5
Tail length1.85.59.3-2.1-3.1-2.1-2.1
Length with tail2.48.89.8-2.9-2.8-3.1-3.1
Length without tail1.22.53.6-1.6-0.8-1.9-1.8
Liver weight, left0.20.20.50.30.10.60.7
Liver weight, right0.00.00.1-0.30.20.10.1
Parametrial fat weight1.73.45.31.42.31.71.8
Retroperitoneal fat weight0.93.06.10.20.62.32.5
Intraocular pressure0.10.20.50.7-0.20.40.4
Extensor digitorum longus weight5.120.526.2-4.4-3.4-5.1-5.0
Soleus weight2.78.09.12.62.73.03.0
Tibialis anterior weight8.629.738.1-5.0-4.4-6.2-6.0
Tibia length0.61.83.2-0.20.9-1.8-1.7
Number of licking bursts0.00.00.0-0.1-0.2-0.10.1
Food consumed during 24 hour testing period1.01.22.21.41.50.70.7
Times rat made contact with spout0.40.41.1-0.4-1.1-0.5-0.4
Mean time between licks in bursts2.73.87.4-2.2-2.7-1.3-1.1
Mean num. licks in bursts0.00.10.20.1-0.50.1-0.0
Std. dev. time between licks in bursts0.30.30.7-0.7-0.80.10.4
Water consumed over 24 hours0.20.30.4-0.2-0.6-0.5-0.6
Indifference point 0 sec0.50.81.1-0.9-0.6-1.0-1.0
Indifference point AUC0.70.91.8-0.10.4-1.2-1.3
Indifference point function ln k1.42.04.20.30.31.92.0
Indifference point function log k1.42.04.20.30.31.92.0
Delay discounting total patch changes 0 sec0.61.01.2-1.0-1.0-1.1-1.0
Delay discounting total patch changes 12 sec5.47.19.8-2.2-2.1-3.1-3.1
Delay discounting total patch changes 18 sec0.30.40.8-0.3-0.2-0.8-0.9
Delay discounting total patch changes 24 sec6.78.510.2-2.9-2.3-3.1-3.2
Delay discounting total patch changes 6 sec0.91.41.8-1.2-0.7-1.4-1.3
Delay discounting time to switch 0 sec0.20.30.6-0.30.8-0.5-0.6
Delay discounting water rate 0 sec0.60.91.31.20.70.81.0
Delay discounting water rate 12 sec0.71.12.30.3-0.41.31.5
Delay discounting water rate 18 sec0.40.50.8-0.5-0.90.60.7
Delay discounting water rate 24 sec0.71.01.90.70.11.21.4
Delay discounting water rate 6 sec0.40.61.2-0.0-0.70.91.1
Locomotor activity0.71.12.9-1.0-1.70.40.5
Locomotor testing distance0.81.32.8-1.4-1.70.40.5
Locomotor testing rearing0.40.71.30.40.31.11.0
Light reinforcement 10.81.42.71.31.70.80.6
Light reinforcement 22.83.88.92.13.01.00.9
Reaction time number correct0.30.40.5-0.4-0.6-0.7-0.7
Reaction time mean minus median0.30.40.80.90.8-0.4-0.4
Reaction time mean minus median AUC0.20.30.91.00.3-0.2-0.1
Reaction time num false alarms0.91.23.8-1.0-2.00.10.0
Reaction time num false alarms AUC2.33.28.8-1.8-3.0-0.6-0.7
Reaction time trials correct on left0.30.40.5-0.4-0.6-0.7-0.7
Reaction time trials on left0.30.40.5-0.4-0.7-0.7-0.7
Reaction time mean1.31.83.61.91.80.40.5
Reaction time mean AUC2.33.05.62.32.40.70.8
Median of all reaction times1.01.43.01.51.70.10.3
Reaction time omissions0.10.20.40.2-0.6-0.4-0.3
Reaction time false alarm rate0.91.33.8-1.2-1.9-0.0-0.1
Reaction time premature initiation rate3.34.45.6-2.2-1.5-2.4-2.2
Reaction time premature initiations4.15.87.4-2.3-2.0-2.7-2.6
Std. dev. reaction times0.70.92.51.60.90.40.4
Reaction time trials completed0.30.40.5-0.4-0.7-0.7-0.7
Reaction time trials AUC0.20.30.4-0.4-0.6-0.6-0.6
Social response proportion0.10.10.1-0.10.3-0.2-0.3
Social responses0.00.00.10.2-0.3-0.2-0.2
Social time0.50.62.1-0.5-1.4-0.1-0.2
Conditioned locomotion1.21.52.0-1.3-1.4-1.1-1.0
Cocaine response after cond. corrected0.40.40.6-0.7-0.80.50.5
Cocaine response after cond. not corrected0.40.50.60.40.80.80.7
Cocaine response before conditioning4.45.313.12.83.60.40.2
Saline control response1.72.23.3-1.0-1.1-1.8-1.8
Condit. Reinf. active minus inactive responses2.02.44.81.82.21.00.9
Condit. Reinf. active-inactive response ratio1.41.53.11.21.70.90.9
Condit. Reinf. active responses0.91.32.91.31.70.50.3
Condit. Reinf. inactive responses0.30.40.80.80.90.20.0
Condit. Reinf. lever presses0.71.02.70.91.6-0.5-0.5
Condit. Reinf. lever reinforcers received0.91.23.01.41.70.20.1
Pavlov. Cond. lever latency0.50.72.4-0.7-1.50.30.3
Pavlov. Cond. magazine entry latency1.61.93.20.41.0-1.8-1.8
Pavlov. Cond. change in total contacts2.53.69.52.13.1-0.5-0.5
Pavlov. Cond. index score1.62.14.81.22.2-1.1-1.1
Pavlov. Cond. latency score1.62.04.61.12.2-1.0-1.0
Pavlov. Cond. lever contacts0.91.33.21.31.8-0.1-0.1
Pavlov. Cond. magazine entry number2.53.16.00.0-0.92.42.4
Pavlov. Cond. intertrial magazine entries0.91.12.20.70.51.51.3
Pavlov. Cond. lever-magazine prob. diff.1.82.45.11.22.3-1.2-1.2
Pavlov. Cond. response bias0.91.22.60.91.6-0.9-0.9
Conditioned reinforcement - actives3.93.84.82.22.11.81.6
Conditioned reinforcement - inactives1.92.24.01.52.01.11.1
Conditioned locomotion1.62.02.61.11.61.41.4
Intermittent access intake day 1-15 change3.23.25.32.31.91.41.4
Intermittent access intake escalation2.32.34.02.01.61.11.1
Intermittent access intake escalation 21.11.12.51.61.30.30.4
Intermitt. access day 1 inactive lever presses1.31.42.10.81.41.11.3
Intermitt. access day 15 inactive lever presses0.80.93.40.31.8-0.1-0.0
Intermitt. access escalation Index0.40.41.0-1.0-0.70.20.2
Intermittent access day 1 total infusions0.60.71.8-0.21.30.70.6
Intermittent access day 15 total infusions4.55.08.02.02.82.02.0
Intermittent access terminal intake (last 3 days)2.32.56.21.42.51.01.0
Intermittent access total infusions1.82.04.71.02.21.01.0
Intermittent access day 1 locomotion0.40.41.4-1.20.2-0.1-0.0
Intermittent access day 15 total locomotion0.50.51.80.31.30.10.3
Intermittent access total locomotion1.21.35.00.22.20.20.4
Intermittent access standard deviation1.71.83.51.91.01.21.2
Cocaine induced anxiety0.10.10.20.10.2-0.4-0.4
Post-drug Anxiety0.20.30.40.20.5-0.6-0.6
Baseline Anxiety1.01.11.2-1.0-0.9-1.1-1.1
Lifetime Intake0.70.81.70.41.30.80.8
Incentive Sensitization - Responses0.50.51.90.41.40.1-0.1
Incentive Sensitization - Breakpoint0.70.72.50.51.60.10.0
Progressive ratio test 1 active lever presses1.31.31.41.11.21.21.2
Progressive ratio test 1 breakpoint1.51.61.71.31.21.31.3
Progressive ratio test 1 inactive lever presses0.80.81.6-1.3-0.8-0.7-0.7
Progressive ratio test 2 active lever presses2.32.44.61.42.11.31.3
Progressive ratio test 2 breakpoint3.23.65.81.82.41.71.6
Progressive ratio test 2 inactive lever presses1.21.44.10.82.00.70.7
Total sessions with >9 infusions0.40.50.9-0.10.30.90.9
Short access day 1 total inactive lever presses0.30.40.7-0.10.30.80.8
Short access day 10 total inactive lever presses0.80.91.8-0.0-0.41.31.3
Short access day 1 total infusions0.20.30.5-0.2-0.00.70.7
Short access day 10 total infusions0.20.30.6-0.60.80.30.2
Short access total infusions0.20.20.5-0.7-0.10.30.2
Short access day 1 locomotion0.60.61.2-1.1-0.8-0.6-0.4
Short access day 10 total locomotion0.20.20.6-0.80.4-0.1-0.0
Short access total locomotion0.70.71.9-1.4-0.3-0.8-0.6
Compulsive drug intake4.04.09.0-2.0-3.0-1.1-1.3
One hour access (0.3 mA shock)3.84.45.61.72.42.32.0
One hour access (shock baseline)8.39.614.83.23.82.62.6
Number of responses in last shaping day1.11.12.7-1.0-1.6-0.5-0.5
Context. condit. distance diff. score0.10.10.1-0.2-0.30.30.2
Locomotion velocity, session 10.10.20.4-0.6-0.4-0.2-0.2
Locomotion distance, session 11.21.52.4-1.6-1.1-1.1-1.1
Locomotion velocity, session 22.63.13.9-1.8-1.2-2.0-1.9
Locomotion distance, session 21.92.74.5-2.0-2.1-1.0-1.1
Locomotion velocity, session 30.70.82.1-1.4-0.5-0.7-0.5
Locomotion distance, session 30.00.00.1-0.3-0.0-0.1-0.0
Stereotopy head waving bouts, day 31.41.74.5-2.1-1.4-0.4-0.4
Stereotopy head waving duration, day 31.61.94.0-2.0-1.8-0.4-0.4
Locomotion velocity, session 70.10.10.3-0.5-0.3-0.1-0.2
Locomotion distance, session 70.70.91.8-1.3-1.3-0.1-0.2
Stereotopy head waving bouts, day 70.10.10.2-0.10.3-0.4-0.4
Stereotopy head waving duration, day 71.21.52.4-1.0-0.5-1.6-1.5
Locomotion velocity, session 80.70.92.4-0.9-1.5-0.4-0.4
Locomotion distance, session 80.30.40.9-1.0-0.80.0-0.1
Degree of sensitization distance0.60.61.6-1.3-0.8-0.1-0.3
Degree of sensitization stereotypy0.50.60.70.40.8-0.9-0.8
Condit. Reinf. active minus inactive responses0.30.40.7-0.20.3-0.8-0.8
Condit. Reinf. active-inactive response ratio0.10.10.3-0.0-0.2-0.5-0.5
Condit. Reinf. active responses0.40.50.9-0.01.0-0.7-0.7
Condit. Reinf. inactive responses0.60.72.40.61.60.30.4
Incentive salience index mean0.50.60.8-0.30.7-0.9-0.9
Condit. Reinf. lever presses0.40.51.5-0.01.2-0.5-0.6
Time in familiar zone, hab. session 10.40.41.00.71.00.10.1
Time in novel zone, hab. session 10.70.71.30.60.11.11.1
Total zone transitions, hab. session 10.60.91.4-0.9-1.2-0.8-0.8
Total locomotion distance, hab. session 10.00.00.2-0.40.10.00.0
Locomotion velocity, hab. session 10.40.51.0-1.0-0.6-0.6-0.6
Time in familiar zone, hab. session 21.31.32.21.51.11.01.0
Time in novel zone, hab. session 21.41.42.4-1.6-1.1-1.0-1.0
Total zone transitions, hab. session 21.01.31.7-1.2-0.7-1.3-1.3
Total locomotion distance, hab. session 20.10.20.4-0.7-0.2-0.4-0.3
Locomotion velocity, hab. session 20.10.10.3-0.60.1-0.2-0.1
Novel to familiar place preference ratio3.53.74.7-2.2-2.0-1.8-1.8
Novelty place preference2.62.73.5-1.9-1.9-1.4-1.4
Time in novel zone, NPP test3.03.14.1-2.0-2.0-1.5-1.5
Total zone transitions, NPP test1.62.32.6-1.5-1.4-1.5-1.6
Total locomotion distance, NPP test0.60.81.4-1.2-1.1-0.6-0.6
Locomotion velocity, NPP test0.40.60.9-0.9-0.9-0.5-0.5
Pavlov. Cond. lever latency0.50.60.90.3-0.70.90.9
Pavlov. Cond. magazine entry latency0.81.02.80.71.7-0.7-0.6
Pavlov. Cond. change in total contacts1.21.33.81.22.0-0.1-0.1
Pavlov. Cond. index score0.70.92.40.91.6-0.4-0.4
Pavlov. Cond. latency score0.60.82.40.71.5-0.3-0.3
Pavlov. Cond. lever contacts0.30.41.20.31.1-0.2-0.2
Pavlov. Cond. magazine entry number1.01.33.0-1.3-1.70.40.4
Pavlov. Cond. intertrial magazine entries0.00.00.10.30.2-0.1-0.1
Pavlov. Cond. lever-magazine prob. diff.0.50.71.70.71.3-0.6-0.5
Pavlov. Cond. response bias0.81.02.60.91.6-0.5-0.4
Bone: apparent density0.10.20.5-0.10.7-0.3-0.4
Bone surface0.61.11.7-0.21.1-1.3-1.3
Bone volume0.50.92.70.61.7-0.5-0.6
Bone: connectivity density0.81.21.9-1.1-0.1-1.4-1.4
Bone: cortical apparent density0.20.30.60.0-0.2-0.7-0.8
Bone: cortical area0.50.81.80.51.3-0.7-0.7
Bone: cortical porosity0.10.20.6-0.1-0.8-0.1-0.1
Bone: cortical porosity0.70.72.0-0.5-1.4-0.5-0.5
Bone: cortical thickness1.72.84.7-0.9-1.1-2.2-2.1
Bone: cortical thickness0.20.30.4-0.2-0.6-0.7-0.6
Bone: cortical tissue density0.30.40.8-0.1-0.4-0.8-0.9
Bone: elastic displacement0.30.30.70.0-0.80.60.4
Bone: elastic work1.41.83.3-1.2-1.8-1.1-1.1
Bone: endosteal estimation1.43.15.21.12.31.71.7
Bone: endosteal perimeter3.26.612.12.13.52.22.3
Bone: final force0.71.22.2-0.40.4-1.5-1.5
Bone: final moment0.71.12.1-0.40.4-1.4-1.4
Bone: marrow area1.43.14.91.02.21.81.8
Bone: maximum diameter0.51.03.20.81.8-0.1-0.0
Bone: maximum force1.01.72.9-0.60.9-1.7-1.7
Bone: maximum moment0.91.62.7-0.60.8-1.6-1.6
Bone: minimum diameter1.63.07.11.22.71.31.3
Bone: periosteal estimation0.81.75.21.02.30.50.6
Bone: periosteal perimeter1.01.74.91.22.20.40.5
Bone: post-yield work2.43.310.11.33.20.90.9
Bone: stiffness0.60.92.40.71.5-0.6-0.5
Bone: tissue strength0.80.70.90.90.90.80.8
Bone: trabecular number0.20.40.6-0.50.3-0.8-0.8
Bone: trabecular spacing0.20.30.50.70.10.60.6
Bone: trabecular thickness1.21.42.61.31.60.90.8
Bone: trabecular tissue density2.94.05.51.91.32.32.3
Breakpoint value in progressive ratio session1.11.22.3-0.2-0.7-1.5-1.4
Distance traveled before self-admin0.90.91.50.40.8-1.2-1.2
Distance traveled after self-admin0.30.30.80.60.9-0.2-0.3
Delta time in closed arm before/after self-admin11.010.719.7-3.7-4.4-2.1-2.2
Delta time in open arm before/after self-admin1.01.01.81.01.4-0.8-0.7
Diff in mean of infusions in LGA sessions1.31.52.0-0.6-1.3-1.4-1.4
Extinction: sum of active levers before priming1.91.93.4-0.8-0.7-1.8-1.8
Active lever presses in extinction session 61.11.01.30.90.8-1.2-1.2
Delta distance traveled before/after self-admin0.30.30.70.0-0.30.80.8
Delta ambulatory time before/after self-admin0.50.50.7-0.2-0.90.80.8
Time in closed arm before self-admin1.51.84.61.42.10.40.6
Time in closed arm after self-admin0.40.40.9-0.7-0.90.40.3
Time in open arm before self-admin2.62.77.7-1.7-2.80.30.3
Time in open arm after self-admin0.10.10.50.1-0.7-0.2-0.1
Sum of active levers in priming session hrs 5-61.41.32.61.61.5-0.5-0.5
Time to tail flick, vehicle, before self-admin0.40.40.8-0.90.1-0.7-0.7
Time to tail flick, vehicle, after self-admin1.41.52.5-1.6-1.3-1.0-1.0
Time to tail flick, test, before self-admin2.12.15.1-2.3-1.6-0.6-0.6
Time to tail flick, test, after self-admin0.10.10.20.30.10.40.3
Delta time to tail flick, vehicle, before/after SA0.20.20.5-0.4-0.7-0.3-0.3
Delta time to tail flick, test, before/after SA1.00.92.91.70.80.30.3
Ambulatory time before self-admin1.41.53.11.21.8-0.9-0.8
Ambulatory time after self-admin1.21.44.31.12.1-0.0-0.1
Total heroin consumption2.93.54.5-1.0-1.9-2.1-2.1
Area under the delay curve0.70.71.7-1.3-0.8-0.4-0.5
Delay disc. indifference point, 0s delay1.11.23.5-1.9-1.2-0.2-0.2
Delay disc. indifference point, 16s delay0.10.10.40.10.7-0.2-0.2
Delay disc. indifference point, 2s delay0.20.20.6-0.20.80.30.3
Delay disc. indifference point, 24s delay0.80.71.5-1.2-1.0-0.5-0.5
Delay disc. indifference point, 4s delay3.63.87.2-2.7-2.3-1.1-1.1
Delay disc. indifference point, 8s delay1.31.43.1-1.5-1.7-0.0-0.1
Delay discount exponential model param0.60.71.71.30.80.40.5
Delay discount hyperbolic model param0.70.81.91.40.80.50.5
Fecal boli incidents, locomotor time 12.93.15.72.22.41.00.9
Change in fecal boli incidents, locomotor task2.12.04.1-2.0-1.90.10.2
Time >=10cm from walls, locomotor time 14.94.98.32.32.91.71.9
Bouts of movement, locomotor time 10.30.41.21.1-0.2-0.3-0.4
Total resting periods, locomotor time 10.50.51.71.30.3-0.3-0.3
Rest time, locomotor task time 10.70.71.21.00.30.81.1
Distance moved, locomotor task time 10.10.10.1-0.40.2-0.2-0.4
Vertical activity count, locomotor time 10.50.51.10.40.21.00.9
Time >=10cm from walls, locomotor time 22.62.75.12.02.21.10.8
Bouts of movement, locomotor time 20.91.01.9-0.4-0.8-1.4-1.1
Total resting periods, locomotor time 20.50.51.1-0.2-0.7-1.1-0.8
Rest time, locomotor task time 21.11.32.70.6-0.11.41.6
Distance moved, locomotor task time 20.20.30.40.50.7-0.3-0.5
Vertical activity count, locomotor time 20.30.31.1-0.2-1.10.20.1
Weight adjusted by age0.91.01.8-0.5-0.3-1.3-1.3
Seeking ratio, delayed vs. immediate footshock0.10.10.3-0.5-0.3-0.0-0.2
Locomotion in novel chamber4.55.59.92.33.11.91.8
Locomotion in novel chamber post-restriction0.91.01.90.7-0.21.41.3
Progressive ratio0.40.51.40.71.20.30.2
Food seeking constrained by brief footshock0.10.20.4-0.5-0.70.10.1
Seeking ratio, punishment vs. effort1.41.74.2-1.5-2.0-0.4-0.2
Run reversals in cocaine runway, females2.32.24.8-2.2-1.5-0.9-1.0
Run reversals in cocaine runway, males0.20.20.50.30.10.60.7
Latency to leave start box in cocaine runway0.50.61.60.21.30.60.5
Latency to leave start box in cocaine runway, F0.10.10.4-0.10.6-0.1-0.1
Latency to leave start box in cocaine runway, M2.62.53.51.31.41.91.7
Cd content in liver1.92.13.11.41.81.21.3
Co content in liver1.41.72.31.50.31.51.5
Cu content in liver1.72.04.3-1.6-2.1-0.7-0.9
Fe content in liver0.00.00.0-0.2-0.10.0-0.1
K content in liver0.50.50.7-0.70.4-0.8-0.8
Mg content in liver0.30.30.4-0.70.5-0.4-0.5
Mn content in liver1.01.21.9-0.8-0.4-1.4-1.4
Na content in liver0.40.41.00.41.0-0.5-0.5
Rb content in liver0.70.91.70.40.51.31.3
Se content in liver0.10.10.2-0.10.1-0.5-0.5
Sr content in liver5.75.26.6-2.0-2.0-2.6-2.5
Zn content in liver2.52.84.6-1.3-0.7-2.1-2.1