ENSRNOG00000069961

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000069961 0.68 0.12 5.4e-08 0.18 0.14 0.15 0.16 6.7e-10 1.0e-07 1.8e-08 7.0e-09
2 Brain gene expression ENSRNOG00000069961 0.51 0.06 0.0e+00 0.21 0.22 0.22 0.23 3.6e-19 7.1e-20 2.7e-20 2.6e-21
3 LHb gene expression ENSRNOG00000069961 0.86 0.06 1.5e-08 0.16 0.35 0.32 0.33 1.3e-04 3.5e-09 2.8e-08 1.4e-08
4 OFC gene expression ENSRNOG00000069961 0.53 0.15 2.4e-04 0.12 0.22 0.17 0.18 7.5e-04 5.8e-06 7.8e-05 3.6e-05
5 PL gene expression ENSRNOG00000069961 0.26 0.09 1.6e-05 0.09 0.07 0.09 0.09 3.4e-07 3.9e-06 1.5e-07 2.4e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4 5
BMI with tail0.62.04.12.01.21.4-0.11.6
BMI without tail1.63.34.71.61.72.21.91.7
Body weight3.113.025.92.83.32.24.05.1
Epididymis fat weight0.81.84.52.11.31.0-0.11.3
Glucose0.30.40.7-0.9-0.6-0.8-0.4-0.4
Heart weight0.40.52.1-0.60.1-0.11.50.4
Left kidney weight1.33.98.20.71.70.72.92.7
Right kidney weight1.54.29.61.11.80.92.53.1
Tail length2.98.622.01.02.52.24.73.0
Length with tail3.412.428.81.23.01.35.44.6
Length without tail1.43.18.61.11.5-0.41.82.9
Liver weight, left2.23.56.11.91.91.41.52.5
Liver weight, right4.88.012.42.13.02.62.73.5
Parametrial fat weight0.20.40.8-0.8-0.6-0.90.50.2
Retroperitoneal fat weight0.72.34.02.01.80.60.22.0
Intraocular pressure0.40.61.20.80.90.40.51.1
Extensor digitorum longus weight1.76.611.22.12.82.32.13.3
Soleus weight2.16.07.92.42.72.32.02.8
Tibialis anterior weight1.65.49.61.52.31.92.53.1
Tibia length1.13.06.01.11.50.52.52.3
Number of licking bursts0.40.40.7-0.50.30.60.90.7
Food consumed during 24 hour testing period0.20.20.6-0.8-0.10.30.1-0.5
Times rat made contact with spout0.20.20.5-0.40.10.40.70.4
Mean time between licks in bursts0.20.30.60.20.50.80.50.4
Mean num. licks in bursts0.10.10.20.3-0.2-0.1-0.4-0.4
Std. dev. time between licks in bursts0.20.20.3-0.5-0.4-0.60.3-0.4
Water consumed over 24 hours0.40.41.4-0.40.20.61.20.5
Indifference point 0 sec0.20.31.2-0.2-0.3-1.1-0.30.0
Indifference point AUC0.50.61.21.10.61.00.40.5
Indifference point function ln k0.20.20.6-0.5-0.4-0.80.30.1
Indifference point function log k0.20.20.6-0.5-0.4-0.80.30.1
Delay discounting total patch changes 0 sec0.10.20.9-0.0-0.1-0.9-0.10.1
Delay discounting total patch changes 12 sec0.20.30.80.4-0.3-0.9-0.6-0.1
Delay discounting total patch changes 18 sec0.20.20.90.2-0.1-0.1-1.0-0.2
Delay discounting total patch changes 24 sec0.10.10.3-0.5-0.2-0.5-0.3-0.2
Delay discounting total patch changes 6 sec0.10.10.5-0.10.1-0.70.3-0.2
Delay discounting time to switch 0 sec0.20.30.5-0.5-0.1-0.4-0.7-0.7
Delay discounting water rate 0 sec0.20.30.90.40.30.10.71.0
Delay discounting water rate 12 sec0.60.92.20.10.80.61.21.5
Delay discounting water rate 18 sec0.40.50.70.30.80.70.80.8
Delay discounting water rate 24 sec0.30.41.3-0.5-0.10.31.10.6
Delay discounting water rate 6 sec0.60.92.21.10.90.30.41.5
Locomotor activity1.62.53.11.01.71.71.61.8
Locomotor testing distance0.20.30.50.50.50.70.10.5
Locomotor testing rearing0.60.91.61.31.01.30.30.6
Light reinforcement 10.10.20.8-0.3-0.10.0-0.9-0.4
Light reinforcement 20.81.13.2-1.0-0.8-0.6-1.8-0.5
Reaction time number correct0.30.41.4-1.2-0.7-0.50.40.1
Reaction time mean minus median3.44.46.61.62.52.02.61.6
Reaction time mean minus median AUC1.51.94.60.71.71.02.10.7
Reaction time num false alarms0.40.62.3-1.5-0.5-0.3-0.2-0.4
Reaction time num false alarms AUC0.10.20.9-0.90.0-0.1-0.20.1
Reaction time trials correct on left0.30.41.4-1.2-0.7-0.50.40.1
Reaction time trials on left0.30.41.3-1.1-0.6-0.40.40.2
Reaction time mean0.10.20.30.30.40.5-0.5-0.5
Reaction time mean AUC0.20.20.40.40.60.6-0.4-0.3
Median of all reaction times0.60.82.7-0.1-0.3-0.1-1.6-1.1
Reaction time omissions0.20.20.5-0.30.70.60.50.2
Reaction time false alarm rate0.00.10.1-0.20.30.1-0.30.1
Reaction time premature initiation rate0.70.92.2-1.3-0.6-0.30.6-1.5
Reaction time premature initiations0.71.02.7-1.6-0.5-0.11.0-1.0
Std. dev. reaction times1.62.23.71.21.91.41.70.9
Reaction time trials completed0.30.41.3-1.1-0.6-0.40.40.2
Reaction time trials AUC0.30.41.4-1.2-0.7-0.50.20.1
Social response proportion3.63.94.81.91.91.92.22.0
Social responses3.14.16.81.52.21.62.62.0
Social time1.82.35.02.21.61.70.50.9
Conditioned locomotion0.50.61.0-1.0-0.8-0.5-0.5-0.8
Cocaine response after cond. corrected0.80.91.80.2-0.9-0.6-1.3-1.2
Cocaine response after cond. not corrected0.70.81.60.0-0.8-0.8-1.3-1.1
Cocaine response before conditioning0.40.51.0-0.11.00.10.90.9
Saline control response1.62.26.1-0.21.11.42.51.3
Condit. Reinf. active minus inactive responses0.20.20.5-0.6-0.2-0.50.7-0.2
Condit. Reinf. active-inactive response ratio0.10.10.60.10.10.10.8-0.0
Condit. Reinf. active responses0.30.40.7-0.8-0.2-0.70.8-0.2
Condit. Reinf. inactive responses0.40.41.1-1.1-0.3-0.90.3-0.2
Condit. Reinf. lever presses0.10.10.30.10.2-0.50.40.1
Condit. Reinf. lever reinforcers received0.30.40.7-0.8-0.3-0.80.8-0.2
Pavlov. Cond. lever latency0.10.10.2-0.2-0.5-0.2-0.4-0.2
Pavlov. Cond. magazine entry latency0.30.30.50.50.70.60.50.5
Pavlov. Cond. change in total contacts0.40.50.70.70.80.40.90.9
Pavlov. Cond. index score0.20.20.50.10.60.30.70.4
Pavlov. Cond. latency score0.10.10.3-0.10.4-0.00.50.2
Pavlov. Cond. lever contacts0.10.10.2-0.0-0.0-0.3-0.2-0.5
Pavlov. Cond. magazine entry number0.00.00.1-0.0-0.30.0-0.2-0.2
Pavlov. Cond. intertrial magazine entries0.81.13.1-1.8-0.9-0.90.2-0.8
Pavlov. Cond. lever-magazine prob. diff.0.20.30.60.20.70.40.80.5
Pavlov. Cond. response bias0.00.00.10.20.1-0.3-0.0-0.3
Conditioned reinforcement - actives1.01.01.50.50.71.21.21.1
Conditioned reinforcement - inactives0.10.10.2-0.3-0.50.1-0.2-0.2
Conditioned locomotion0.10.10.30.10.30.10.50.5
Intermittent access intake day 1-15 change1.21.22.31.11.01.50.90.8
Intermittent access intake escalation1.71.73.11.31.21.81.11.0
Intermittent access intake escalation 20.60.61.30.80.71.20.40.5
Intermitt. access day 1 inactive lever presses0.10.10.20.50.20.10.00.3
Intermitt. access day 15 inactive lever presses1.51.63.41.91.31.30.41.0
Intermitt. access escalation Index0.10.10.20.20.40.4-0.10.3
Intermittent access day 1 total infusions0.40.41.40.10.21.20.90.1
Intermittent access day 15 total infusions1.82.04.80.91.02.21.70.8
Intermittent access terminal intake (last 3 days)0.91.03.20.70.71.80.90.4
Intermittent access total infusions0.60.72.20.20.31.51.0-0.0
Intermittent access day 1 locomotion0.10.10.2-0.4-0.30.1-0.0-0.5
Intermittent access day 15 total locomotion0.30.30.8-0.20.20.60.9-0.5
Intermittent access total locomotion0.30.40.8-0.8-0.50.10.3-0.9
Intermittent access standard deviation3.63.95.42.31.92.31.21.9
Cocaine induced anxiety1.01.21.5-1.0-1.2-1.1-1.0-1.0
Post-drug Anxiety1.11.32.4-1.6-1.2-0.7-0.6-1.3
Baseline Anxiety0.30.30.60.70.70.60.10.4
Lifetime Intake0.30.41.40.10.01.20.6-0.2
Incentive Sensitization - Responses1.21.22.5-1.6-1.0-0.70.9-0.9
Incentive Sensitization - Breakpoint1.31.32.8-1.7-1.1-0.80.9-1.0
Progressive ratio test 1 active lever presses0.91.02.10.60.71.41.10.8
Progressive ratio test 1 breakpoint0.80.92.20.50.61.51.10.7
Progressive ratio test 1 inactive lever presses2.02.13.01.41.31.71.41.5
Progressive ratio test 2 active lever presses0.60.62.0-0.9-0.40.31.4-0.1
Progressive ratio test 2 breakpoint0.60.72.2-0.9-0.30.51.5-0.1
Progressive ratio test 2 inactive lever presses0.60.72.60.10.40.71.60.6
Total sessions with >9 infusions3.13.44.11.91.82.01.52.0
Short access day 1 total inactive lever presses2.32.64.11.31.41.42.01.8
Short access day 10 total inactive lever presses0.20.20.30.50.50.20.60.3
Short access day 1 total infusions0.60.61.70.90.51.30.10.6
Short access day 10 total infusions0.70.82.50.50.41.60.80.5
Short access total infusions0.30.31.30.30.01.10.20.2
Short access day 1 locomotion0.10.10.50.2-0.00.7-0.30.1
Short access day 10 total locomotion0.70.71.10.90.81.00.21.1
Short access total locomotion0.40.40.90.60.61.00.20.6
Compulsive drug intake0.10.10.3-0.2-0.1-0.2-0.4-0.5
One hour access (0.3 mA shock)0.30.41.0-0.3-0.11.00.6-0.5
One hour access (shock baseline)0.40.51.60.30.31.20.90.1
Number of responses in last shaping day2.42.44.01.81.62.00.21.4
Context. condit. distance diff. score3.64.46.92.62.31.41.52.4
Locomotion velocity, session 10.10.20.30.30.20.50.60.3
Locomotion distance, session 10.30.40.6-0.7-0.80.5-0.2-0.7
Locomotion velocity, session 20.30.31.2-0.2-0.11.10.50.3
Locomotion distance, session 20.50.81.5-1.0-0.01.21.20.1
Locomotion velocity, session 30.10.10.50.70.3-0.2-0.10.3
Locomotion distance, session 30.40.40.7-0.7-0.6-0.80.2-0.7
Stereotopy head waving bouts, day 33.34.06.11.22.02.51.92.3
Stereotopy head waving duration, day 32.02.53.31.61.81.80.81.7
Locomotion velocity, session 72.62.85.62.41.91.51.01.3
Locomotion distance, session 71.41.82.91.61.71.11.11.0
Stereotopy head waving bouts, day 70.40.41.50.40.50.61.2-0.0
Stereotopy head waving duration, day 70.10.10.2-0.3-0.20.00.4-0.4
Locomotion velocity, session 80.10.10.40.00.00.30.70.2
Locomotion distance, session 81.82.73.61.21.61.61.91.9
Degree of sensitization distance2.02.02.91.61.61.70.71.2
Degree of sensitization stereotypy0.10.10.4-0.0-0.3-0.00.3-0.7
Condit. Reinf. active minus inactive responses0.10.10.4-0.1-0.2-0.5-0.60.0
Condit. Reinf. active-inactive response ratio0.50.51.8-0.0-0.3-0.9-1.3-0.2
Condit. Reinf. active responses0.10.10.2-0.1-0.4-0.2-0.4-0.2
Condit. Reinf. inactive responses0.10.10.40.10.00.70.2-0.2
Incentive salience index mean0.00.00.10.20.1-0.2-0.00.1
Condit. Reinf. lever presses0.30.40.80.90.50.90.00.1
Time in familiar zone, hab. session 10.40.40.5-0.7-0.6-0.5-0.7-0.5
Time in novel zone, hab. session 10.80.81.11.00.90.70.81.1
Total zone transitions, hab. session 11.72.47.3-0.41.31.42.70.9
Total locomotion distance, hab. session 11.31.83.50.71.61.41.90.9
Locomotion velocity, hab. session 10.60.91.90.41.11.11.40.3
Time in familiar zone, hab. session 20.80.81.80.91.30.7-0.11.0
Time in novel zone, hab. session 20.60.61.3-0.6-1.1-0.6-0.3-1.0
Total zone transitions, hab. session 20.60.81.6-1.3-0.31.20.9-0.1
Total locomotion distance, hab. session 20.40.51.3-1.1-0.50.60.4-0.7
Locomotion velocity, hab. session 20.50.71.8-1.3-0.70.40.3-1.0
Novel to familiar place preference ratio0.30.30.6-0.7-0.7-0.4-0.4-0.3
Novelty place preference0.40.40.7-0.8-0.8-0.6-0.4-0.4
Time in novel zone, NPP test0.40.40.7-0.8-0.9-0.7-0.4-0.3
Total zone transitions, NPP test0.81.12.60.00.71.41.60.8
Total locomotion distance, NPP test0.71.01.90.20.91.41.40.3
Locomotion velocity, NPP test1.11.63.10.51.11.81.70.5
Pavlov. Cond. lever latency1.62.04.6-1.3-1.5-2.2-1.0-0.7
Pavlov. Cond. magazine entry latency1.11.43.70.01.11.21.90.8
Pavlov. Cond. change in total contacts2.02.13.61.11.91.71.11.4
Pavlov. Cond. index score1.82.33.31.11.61.81.71.1
Pavlov. Cond. latency score1.21.62.80.81.31.71.50.8
Pavlov. Cond. lever contacts1.31.53.11.31.41.80.80.5
Pavlov. Cond. magazine entry number2.63.26.2-0.8-2.0-1.6-2.5-1.7
Pavlov. Cond. intertrial magazine entries1.92.23.2-0.5-1.8-1.5-1.6-1.6
Pavlov. Cond. lever-magazine prob. diff.1.51.92.91.01.51.71.51.0
Pavlov. Cond. response bias1.92.43.21.01.81.71.81.3
Bone: apparent density0.71.22.90.90.81.20.41.7
Bone surface2.23.86.51.61.82.11.42.6
Bone volume1.52.54.91.61.51.60.52.2
Bone: connectivity density2.33.65.81.61.61.91.82.4
Bone: cortical apparent density2.12.73.4-1.1-1.8-1.8-1.7-1.6
Bone: cortical area2.53.85.61.72.11.91.62.4
Bone: cortical porosity0.90.92.80.60.91.70.50.7
Bone: cortical porosity1.01.12.90.81.01.70.60.8
Bone: cortical thickness0.71.22.01.21.11.00.71.4
Bone: cortical thickness0.10.10.3-0.3-0.2-0.20.5-0.6
Bone: cortical tissue density2.33.03.7-1.1-1.9-1.9-1.9-1.7
Bone: elastic displacement0.40.50.9-0.8-1.00.0-0.5-0.8
Bone: elastic work0.20.20.5-0.4-0.5-0.40.7-0.1
Bone: endosteal estimation0.51.12.8-0.10.70.71.71.2
Bone: endosteal perimeter1.12.23.60.71.51.21.81.9
Bone: final force0.50.81.20.30.90.91.11.1
Bone: final moment0.40.71.10.30.80.90.91.1
Bone: marrow area0.41.02.8-0.20.70.61.71.1
Bone: maximum diameter2.13.96.01.32.02.01.92.4
Bone: maximum force1.01.82.60.81.41.11.51.6
Bone: maximum moment0.91.62.40.81.31.21.31.6
Bone: minimum diameter1.01.82.70.91.71.51.11.4
Bone: periosteal estimation1.53.04.60.91.71.62.02.1
Bone: periosteal perimeter2.13.65.71.52.11.51.82.4
Bone: post-yield work0.20.30.60.40.60.8-0.20.5
Bone: stiffness0.40.71.70.20.80.21.31.0
Bone: tissue strength0.30.30.5-0.7-0.6-0.7-0.50.1
Bone: trabecular number1.52.44.41.31.41.61.12.1
Bone: trabecular spacing0.70.91.7-0.5-0.8-1.3-0.9-1.1
Bone: trabecular thickness0.30.31.10.50.30.60.01.0
Bone: trabecular tissue density0.40.62.7-0.2-0.3-1.70.0-0.2
Breakpoint value in progressive ratio session2.22.52.91.51.51.41.71.7
Distance traveled before self-admin0.91.01.8-0.3-0.9-1.2-1.3-0.8
Distance traveled after self-admin0.00.10.2-0.0-0.00.0-0.50.2
Delta time in closed arm before/after self-admin0.40.40.80.50.70.40.40.9
Delta time in open arm before/after self-admin2.01.94.0-1.2-1.4-0.8-1.2-2.0
Diff in mean of infusions in LGA sessions0.60.71.71.31.00.40.10.5
Extinction: sum of active levers before priming0.40.40.7-0.2-0.7-0.7-0.8-0.3
Active lever presses in extinction session 61.01.02.01.40.80.30.31.4
Delta distance traveled before/after self-admin0.60.71.40.20.71.20.80.8
Delta ambulatory time before/after self-admin1.11.22.20.81.11.50.61.2
Time in closed arm before self-admin0.10.10.3-0.20.00.30.50.3
Time in closed arm after self-admin0.90.91.80.20.90.71.21.3
Time in open arm before self-admin0.40.50.70.60.70.40.70.8
Time in open arm after self-admin0.20.30.6-0.1-0.5-0.1-0.7-0.8
Sum of active levers in priming session hrs 5-60.50.50.80.60.60.50.90.9
Time to tail flick, vehicle, before self-admin0.10.10.20.50.4-0.1-0.20.5
Time to tail flick, vehicle, after self-admin0.20.20.7-0.4-0.1-0.90.40.1
Time to tail flick, test, before self-admin0.50.51.10.30.70.41.10.8
Time to tail flick, test, after self-admin0.30.30.6-0.5-0.4-0.8-0.6-0.1
Delta time to tail flick, vehicle, before/after SA1.41.41.8-1.1-1.2-1.3-0.9-1.3
Delta time to tail flick, test, before/after SA0.50.50.8-0.6-0.7-0.6-0.9-0.7
Ambulatory time before self-admin0.60.61.1-0.4-0.7-0.8-1.0-0.8
Ambulatory time after self-admin0.30.30.50.50.50.6-0.20.7
Total heroin consumption0.30.30.90.90.60.5-0.30.1
Area under the delay curve0.50.50.91.00.80.80.60.2
Delay disc. indifference point, 0s delay0.40.51.01.00.70.60.50.6
Delay disc. indifference point, 16s delay0.40.41.11.00.70.50.10.4
Delay disc. indifference point, 2s delay0.20.20.60.40.50.40.8-0.3
Delay disc. indifference point, 24s delay1.41.42.51.61.31.30.50.9
Delay disc. indifference point, 4s delay0.30.30.80.90.40.7-0.2-0.2
Delay disc. indifference point, 8s delay0.10.10.4-0.3-0.3-0.3-0.1-0.6
Delay discount exponential model param0.50.51.0-1.0-0.8-0.7-0.5-0.2
Delay discount hyperbolic model param0.40.40.8-0.9-0.7-0.7-0.6-0.1
Fecal boli incidents, locomotor time 10.10.20.40.40.2-0.10.40.6
Change in fecal boli incidents, locomotor task0.60.61.0-0.5-0.8-0.8-0.7-1.0
Time >=10cm from walls, locomotor time 12.92.94.0-1.8-2.0-1.8-0.7-2.0
Bouts of movement, locomotor time 10.20.20.40.60.50.40.10.4
Total resting periods, locomotor time 10.00.00.20.1-0.0-0.1-0.4-0.1
Rest time, locomotor task time 11.51.62.5-1.6-1.5-1.0-0.9-1.4
Distance moved, locomotor task time 10.50.60.90.90.81.00.30.6
Vertical activity count, locomotor time 10.20.20.50.70.30.4-0.00.4
Time >=10cm from walls, locomotor time 20.10.10.40.20.3-0.10.60.1
Bouts of movement, locomotor time 22.93.14.91.71.61.61.62.2
Total resting periods, locomotor time 22.02.13.71.51.31.31.21.9
Rest time, locomotor task time 21.92.22.8-1.6-1.5-1.7-0.7-1.7
Distance moved, locomotor task time 21.51.83.31.51.31.80.51.3
Vertical activity count, locomotor time 21.01.11.81.20.71.30.11.2
Weight adjusted by age0.20.30.6-0.30.20.80.40.6
Seeking ratio, delayed vs. immediate footshock4.55.17.2-2.6-2.2-2.7-1.0-2.5
Locomotion in novel chamber1.01.23.7-1.9-1.00.10.6-1.1
Locomotion in novel chamber post-restriction1.51.83.70.10.81.91.91.2
Progressive ratio0.20.20.8-0.2-0.0-0.10.90.0
Food seeking constrained by brief footshock0.40.50.8-0.7-0.8-0.4-0.9-0.3
Seeking ratio, punishment vs. effort0.30.31.1-0.5-0.5-0.2-1.0-0.1
Run reversals in cocaine runway, females0.10.10.4-0.0-0.10.4-0.2-0.6
Run reversals in cocaine runway, males0.60.61.31.00.50.7-0.01.2
Latency to leave start box in cocaine runway0.40.41.70.50.3-1.3-0.30.1
Latency to leave start box in cocaine runway, F0.60.71.41.20.7-0.8-0.20.9
Latency to leave start box in cocaine runway, M1.51.52.5-1.6-1.0-1.4-0.4-1.3
Cd content in liver1.01.11.5-0.9-1.1-0.9-1.1-1.2
Co content in liver0.40.50.9-1.0-0.70.1-0.4-0.8
Cu content in liver1.21.42.61.31.31.00.11.6
Fe content in liver1.01.22.61.60.7-0.0-0.71.6
K content in liver0.10.10.5-0.7-0.1-0.00.1-0.3
Mg content in liver0.20.20.4-0.6-0.1-0.50.3-0.3
Mn content in liver0.10.20.4-0.20.40.30.50.6
Na content in liver0.91.01.9-1.0-1.2-1.40.1-0.9
Rb content in liver0.40.51.21.10.4-0.2-0.9-0.3
Se content in liver0.70.92.4-0.0-0.7-1.0-1.5-0.6
Sr content in liver1.31.21.80.80.81.31.31.1
Zn content in liver0.10.20.3-0.3-0.2-0.50.20.5