ENSRNOG00000069263

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain intron excision ratio chr12:6037500:6055767 0.21 0.1 2.7e-04 0.05 0.06 0.05 0.03 1.1e-05 5.5e-06 1.5e-05 9.4e-04
2 Brain intron excision ratio chr12:6037500:6064708 0.22 0.1 1.9e-04 0.04 0.06 0.05 0.03 2.3e-04 5.7e-06 1.3e-05 5.3e-04
3 OFC gene expression ENSRNOG00000069263 0.24 0.14 1.1e-03 0.12 0.07 0.04 0.1 1.0e-03 7.9e-03 4.7e-02 2.0e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail1.03.29.10.5-0.3-3.0
BMI without tail0.20.30.5-0.60.7-0.2
Body weight3.615.244.01.0-0.7-6.6
Epididymis fat weight1.53.610.40.4-0.3-3.2
Glucose0.91.41.61.1-1.1-1.3
Heart weight0.00.00.10.2-0.20.3
Left kidney weight1.95.615.60.8-0.7-3.9
Right kidney weight4.011.528.11.9-1.7-5.3
Tail length0.10.40.5-0.60.7-0.7
Length with tail1.66.017.90.3-0.2-4.2
Length without tail4.39.426.41.0-0.9-5.1
Liver weight, left1.32.05.8-0.30.4-2.4
Liver weight, right1.52.56.7-0.60.7-2.6
Parametrial fat weight0.91.71.81.4-1.3-1.2
Retroperitoneal fat weight0.82.67.2-0.50.6-2.7
Intraocular pressure0.60.81.0-1.01.0-0.6
Extensor digitorum longus weight0.62.66.8-0.60.8-2.6
Soleus weight0.72.03.0-1.11.3-1.7
Tibialis anterior weight0.72.36.7-0.10.2-2.6
Tibia length0.51.44.1-0.20.3-2.0
Number of licking bursts1.01.11.21.1-1.1-1.0
Food consumed during 24 hour testing period0.60.72.2-0.20.21.5
Times rat made contact with spout0.10.10.2-0.10.00.5
Mean time between licks in bursts0.10.10.2-0.40.40.2
Mean num. licks in bursts1.01.21.7-1.01.01.3
Std. dev. time between licks in bursts0.10.10.20.4-0.40.0
Water consumed over 24 hours0.20.20.30.5-0.5-0.1
Indifference point 0 sec0.20.40.80.4-0.4-0.9
Indifference point AUC0.10.10.20.2-0.2-0.4
Indifference point function ln k0.20.20.30.5-0.5-0.3
Indifference point function log k0.20.20.30.5-0.5-0.3
Delay discounting total patch changes 0 sec0.10.10.40.1-0.1-0.6
Delay discounting total patch changes 12 sec0.30.40.70.5-0.5-0.9
Delay discounting total patch changes 18 sec0.00.00.10.2-0.2-0.2
Delay discounting total patch changes 24 sec0.00.00.00.1-0.10.2
Delay discounting total patch changes 6 sec0.10.20.2-0.50.50.2
Delay discounting time to switch 0 sec0.40.70.8-0.80.80.9
Delay discounting water rate 0 sec0.30.51.30.4-0.4-1.1
Delay discounting water rate 12 sec0.20.30.90.00.0-0.9
Delay discounting water rate 18 sec1.01.41.5-1.21.21.1
Delay discounting water rate 24 sec0.10.10.10.2-0.2-0.3
Delay discounting water rate 6 sec0.50.71.0-0.70.7-1.0
Locomotor activity0.40.60.9-0.60.7-1.0
Locomotor testing distance0.20.30.90.1-0.1-0.9
Locomotor testing rearing0.30.40.7-0.80.80.0
Light reinforcement 10.10.20.60.1-0.10.8
Light reinforcement 20.91.21.51.2-1.2-0.8
Reaction time number correct1.11.61.91.4-1.4-1.0
Reaction time mean minus median8.411.012.7-3.63.52.8
Reaction time mean minus median AUC7.910.110.7-3.33.23.1
Reaction time num false alarms0.50.71.11.0-1.10.0
Reaction time num false alarms AUC0.20.30.40.7-0.6-0.2
Reaction time trials correct on left1.11.61.91.4-1.4-1.0
Reaction time trials on left1.01.41.61.3-1.3-1.0
Reaction time mean3.95.46.6-2.22.22.6
Reaction time mean AUC4.35.85.9-2.42.42.4
Median of all reaction times1.82.53.9-1.31.32.0
Reaction time omissions1.72.42.8-1.71.61.3
Reaction time false alarm rate0.00.00.00.0-0.00.0
Reaction time premature initiation rate3.95.313.2-1.21.13.6
Reaction time premature initiations2.13.08.1-0.70.62.8
Std. dev. reaction times7.29.911.4-3.43.32.7
Reaction time trials completed1.01.41.61.3-1.3-1.0
Reaction time trials AUC1.11.51.81.3-1.3-1.0
Social response proportion1.41.52.3-1.51.5-0.2
Social responses4.35.67.2-2.72.71.6
Social time1.31.72.5-1.51.60.3
Conditioned locomotion0.20.20.40.3-0.30.6
Cocaine response after cond. corrected0.20.20.30.5-0.50.2
Cocaine response after cond. not corrected0.20.20.30.6-0.60.1
Cocaine response before conditioning0.30.30.5-0.70.70.1
Saline control response0.60.80.9-0.90.90.9
Condit. Reinf. active minus inactive responses0.60.71.4-0.70.61.2
Condit. Reinf. active-inactive response ratio0.90.91.8-0.70.71.3
Condit. Reinf. active responses0.20.30.6-0.30.30.8
Condit. Reinf. inactive responses0.00.00.00.2-0.20.1
Condit. Reinf. lever presses0.10.10.2-0.40.4-0.1
Condit. Reinf. lever reinforcers received0.20.20.5-0.30.30.7
Pavlov. Cond. lever latency0.50.70.80.9-0.9-0.7
Pavlov. Cond. magazine entry latency0.20.20.3-0.50.5-0.0
Pavlov. Cond. change in total contacts0.30.50.7-0.80.90.1
Pavlov. Cond. index score0.30.40.5-0.70.70.4
Pavlov. Cond. latency score0.30.30.4-0.60.60.4
Pavlov. Cond. lever contacts0.40.60.6-0.70.70.8
Pavlov. Cond. magazine entry number0.10.20.20.5-0.5-0.2
Pavlov. Cond. intertrial magazine entries0.30.40.90.4-0.40.9
Pavlov. Cond. lever-magazine prob. diff.0.30.40.5-0.70.70.3
Pavlov. Cond. response bias0.71.01.1-1.00.91.1
Conditioned reinforcement - actives1.91.92.71.2-1.2-1.6
Conditioned reinforcement - inactives1.51.72.01.4-1.4-1.1
Conditioned locomotion0.00.00.0-0.00.00.1
Intermittent access intake day 1-15 change0.10.10.2-0.40.40.1
Intermittent access intake escalation0.20.10.2-0.50.5-0.0
Intermittent access intake escalation 20.20.20.3-0.50.50.2
Intermitt. access day 1 inactive lever presses0.10.10.1-0.20.2-0.3
Intermitt. access day 15 inactive lever presses0.50.50.9-0.90.90.0
Intermitt. access escalation Index0.20.10.2-0.40.40.2
Intermittent access day 1 total infusions0.20.20.60.2-0.10.8
Intermittent access day 15 total infusions0.20.20.6-0.20.20.8
Intermittent access terminal intake (last 3 days)0.20.30.8-0.10.20.9
Intermittent access total infusions0.40.51.40.1-0.11.2
Intermittent access day 1 locomotion0.50.51.4-0.0-0.01.2
Intermittent access day 15 total locomotion1.21.33.1-0.70.61.8
Intermittent access total locomotion1.11.23.70.1-0.11.9
Intermittent access standard deviation0.40.40.7-0.80.8-0.3
Cocaine induced anxiety0.60.60.91.0-1.00.2
Post-drug Anxiety0.91.02.40.5-0.51.5
Baseline Anxiety0.50.60.7-0.80.90.5
Lifetime Intake0.30.40.50.6-0.50.7
Incentive Sensitization - Responses1.01.01.51.2-1.20.0
Incentive Sensitization - Breakpoint1.01.01.51.2-1.20.1
Progressive ratio test 1 active lever presses0.20.20.30.5-0.5-0.4
Progressive ratio test 1 breakpoint0.20.20.30.5-0.5-0.1
Progressive ratio test 1 inactive lever presses0.20.20.70.10.0-0.9
Progressive ratio test 2 active lever presses0.90.91.41.2-1.2-0.1
Progressive ratio test 2 breakpoint0.80.81.31.1-1.10.1
Progressive ratio test 2 inactive lever presses0.20.30.30.5-0.5-0.5
Total sessions with >9 infusions0.30.30.3-0.50.6-0.6
Short access day 1 total inactive lever presses0.40.41.1-0.20.3-1.1
Short access day 10 total inactive lever presses0.91.01.2-1.11.10.8
Short access day 1 total infusions0.70.70.80.8-0.8-0.9
Short access day 10 total infusions0.20.20.40.6-0.60.0
Short access total infusions0.50.60.90.9-0.9-0.1
Short access day 1 locomotion0.20.30.40.6-0.6-0.1
Short access day 10 total locomotion0.30.30.80.3-0.2-0.9
Short access total locomotion0.20.20.4-0.40.40.6
Compulsive drug intake0.60.60.7-0.80.80.8
One hour access (0.3 mA shock)0.30.30.80.3-0.30.9
One hour access (shock baseline)0.20.20.20.5-0.50.4
Number of responses in last shaping day0.60.60.9-0.90.9-0.0
Context. condit. distance diff. score2.32.83.8-1.92.0-1.0
Locomotion velocity, session 10.00.00.0-0.10.10.1
Locomotion distance, session 10.91.11.71.3-1.30.1
Locomotion velocity, session 21.72.02.71.6-1.6-1.0
Locomotion distance, session 20.60.91.41.2-1.20.1
Locomotion velocity, session 30.10.10.4-0.20.2-0.6
Locomotion distance, session 30.20.20.50.1-0.10.7
Stereotopy head waving bouts, day 30.70.91.4-0.70.8-1.2
Stereotopy head waving duration, day 31.31.62.4-1.51.5-0.3
Locomotion velocity, session 74.44.86.6-2.62.61.1
Locomotion distance, session 74.35.46.7-2.62.61.7
Stereotopy head waving bouts, day 71.31.52.0-1.11.11.4
Stereotopy head waving duration, day 70.00.00.1-0.0-0.00.4
Locomotion velocity, session 80.00.10.1-0.10.00.4
Locomotion distance, session 80.20.40.7-0.40.5-0.8
Degree of sensitization distance2.22.23.0-1.71.70.8
Degree of sensitization stereotypy0.10.10.4-0.10.10.6
Condit. Reinf. active minus inactive responses0.40.51.30.2-0.2-1.1
Condit. Reinf. active-inactive response ratio0.10.20.3-0.30.3-0.5
Condit. Reinf. active responses0.40.40.70.6-0.6-0.8
Condit. Reinf. inactive responses0.10.10.10.3-0.30.2
Incentive salience index mean0.10.10.2-0.10.1-0.5
Condit. Reinf. lever presses0.00.00.0-0.10.1-0.0
Time in familiar zone, hab. session 10.80.81.01.0-1.0-0.6
Time in novel zone, hab. session 10.50.50.7-0.80.9-0.3
Total zone transitions, hab. session 11.01.42.0-1.01.01.4
Total locomotion distance, hab. session 11.92.73.2-1.81.81.3
Locomotion velocity, hab. session 12.02.93.2-1.71.71.8
Time in familiar zone, hab. session 21.51.52.2-1.51.5-0.5
Time in novel zone, hab. session 20.70.81.11.0-1.00.4
Total zone transitions, hab. session 21.31.72.61.6-1.6-0.0
Total locomotion distance, hab. session 20.50.60.70.8-0.80.7
Locomotion velocity, hab. session 20.71.01.21.1-1.10.7
Novel to familiar place preference ratio0.30.30.50.7-0.7-0.0
Novelty place preference0.30.30.50.7-0.7-0.1
Time in novel zone, NPP test0.30.30.50.7-0.7-0.2
Total zone transitions, NPP test0.10.10.10.4-0.4-0.3
Total locomotion distance, NPP test0.40.50.7-0.70.70.8
Locomotion velocity, NPP test0.50.80.9-0.80.81.0
Pavlov. Cond. lever latency2.93.75.01.8-1.8-2.2
Pavlov. Cond. magazine entry latency1.31.72.6-1.11.11.6
Pavlov. Cond. change in total contacts2.52.63.3-1.81.81.1
Pavlov. Cond. index score2.33.03.3-1.71.71.8
Pavlov. Cond. latency score2.02.63.9-1.41.42.0
Pavlov. Cond. lever contacts3.44.05.4-1.81.82.3
Pavlov. Cond. magazine entry number3.03.84.22.1-2.1-1.7
Pavlov. Cond. intertrial magazine entries0.60.71.11.0-1.0-0.1
Pavlov. Cond. lever-magazine prob. diff.1.92.42.4-1.51.51.6
Pavlov. Cond. response bias2.63.23.4-1.81.81.7
Bone: apparent density5.18.519.01.9-1.7-4.4
Bone surface3.15.515.30.8-0.7-3.9
Bone volume3.86.517.41.1-0.9-4.2
Bone: connectivity density2.43.810.60.7-0.5-3.3
Bone: cortical apparent density0.91.21.71.3-1.3-0.4
Bone: cortical area1.72.57.5-0.20.3-2.7
Bone: cortical porosity0.00.00.1-0.00.00.3
Bone: cortical porosity0.30.40.5-0.50.60.7
Bone: cortical thickness1.21.95.70.2-0.2-2.4
Bone: cortical thickness0.70.82.0-0.50.51.4
Bone: cortical tissue density0.91.21.71.3-1.3-0.3
Bone: elastic displacement0.70.81.31.1-1.10.1
Bone: elastic work0.70.90.90.9-0.9-0.9
Bone: endosteal estimation0.20.30.90.3-0.3-0.9
Bone: endosteal perimeter0.51.03.1-0.10.1-1.8
Bone: final force0.10.20.60.00.0-0.8
Bone: final moment0.20.20.70.1-0.1-0.9
Bone: marrow area0.10.30.70.3-0.3-0.9
Bone: maximum diameter1.42.57.40.00.1-2.7
Bone: maximum force0.30.51.3-0.40.4-1.1
Bone: maximum moment0.30.61.6-0.20.3-1.3
Bone: minimum diameter0.30.60.8-0.90.9-0.6
Bone: periosteal estimation0.71.54.50.00.1-2.1
Bone: periosteal perimeter1.11.94.6-0.70.8-2.2
Bone: post-yield work0.10.20.5-0.10.1-0.7
Bone: stiffness0.10.10.2-0.40.4-0.1
Bone: tissue strength1.31.31.91.0-1.0-1.4
Bone: trabecular number2.33.610.10.6-0.5-3.2
Bone: trabecular spacing0.40.61.6-0.20.11.3
Bone: trabecular thickness4.35.210.41.7-1.6-3.2
Bone: trabecular tissue density0.00.10.1-0.30.30.1
Breakpoint value in progressive ratio session0.80.91.4-1.21.20.1
Distance traveled before self-admin0.10.10.10.3-0.3-0.3
Distance traveled after self-admin0.00.00.0-0.10.10.0
Delta time in closed arm before/after self-admin0.20.20.5-0.10.1-0.7
Delta time in open arm before/after self-admin1.51.44.2-0.20.12.1
Diff in mean of infusions in LGA sessions2.42.73.7-1.91.90.9
Extinction: sum of active levers before priming1.01.01.01.0-1.0-1.0
Active lever presses in extinction session 61.11.13.2-0.00.1-1.8
Delta distance traveled before/after self-admin0.40.50.7-0.60.60.8
Delta ambulatory time before/after self-admin0.50.50.6-0.80.80.6
Time in closed arm before self-admin0.40.40.60.6-0.5-0.8
Time in closed arm after self-admin0.50.51.40.3-0.3-1.2
Time in open arm before self-admin0.30.31.0-0.00.1-1.0
Time in open arm after self-admin0.30.30.8-0.30.20.9
Sum of active levers in priming session hrs 5-60.20.10.4-0.20.2-0.6
Time to tail flick, vehicle, before self-admin0.80.80.9-0.90.90.8
Time to tail flick, vehicle, after self-admin0.10.10.1-0.30.30.3
Time to tail flick, test, before self-admin0.60.61.60.4-0.3-1.3
Time to tail flick, test, after self-admin0.00.00.10.1-0.10.3
Delta time to tail flick, vehicle, before/after SA0.40.40.60.8-0.8-0.2
Delta time to tail flick, test, before/after SA0.60.51.5-0.20.21.2
Ambulatory time before self-admin0.10.10.10.3-0.30.0
Ambulatory time after self-admin0.10.10.1-0.40.40.0
Total heroin consumption0.60.70.8-0.90.90.7
Area under the delay curve1.71.82.1-1.51.41.2
Delay disc. indifference point, 0s delay0.30.30.5-0.70.7-0.1
Delay disc. indifference point, 16s delay0.70.71.0-1.01.00.3
Delay disc. indifference point, 2s delay2.02.23.0-1.41.41.7
Delay disc. indifference point, 24s delay1.11.11.5-1.21.20.4
Delay disc. indifference point, 4s delay0.40.40.5-0.70.70.4
Delay disc. indifference point, 8s delay0.90.91.9-0.70.71.4
Delay discount exponential model param2.02.12.41.6-1.5-1.3
Delay discount hyperbolic model param1.92.02.21.5-1.5-1.3
Fecal boli incidents, locomotor time 10.70.72.00.3-0.3-1.4
Change in fecal boli incidents, locomotor task0.60.51.6-0.20.21.2
Time >=10cm from walls, locomotor time 11.41.42.11.4-1.4-0.0
Bouts of movement, locomotor time 10.10.10.2-0.20.2-0.4
Total resting periods, locomotor time 10.00.00.10.1-0.1-0.3
Rest time, locomotor task time 10.91.01.21.1-1.10.7
Distance moved, locomotor task time 10.10.20.4-0.10.1-0.7
Vertical activity count, locomotor time 10.80.82.10.5-0.4-1.4
Time >=10cm from walls, locomotor time 20.00.00.1-0.10.2-0.2
Bouts of movement, locomotor time 20.91.02.90.1-0.0-1.7
Total resting periods, locomotor time 21.21.33.40.5-0.4-1.8
Rest time, locomotor task time 20.40.40.60.5-0.60.8
Distance moved, locomotor task time 20.20.20.7-0.00.1-0.8
Vertical activity count, locomotor time 22.12.35.50.9-0.8-2.3
Weight adjusted by age0.40.50.80.5-0.5-0.9
Seeking ratio, delayed vs. immediate footshock0.91.02.80.2-0.31.7
Locomotion in novel chamber0.91.11.60.9-1.01.2
Locomotion in novel chamber post-restriction0.30.30.50.7-0.7-0.2
Progressive ratio0.10.10.20.2-0.20.4
Food seeking constrained by brief footshock1.21.51.91.4-1.4-0.8
Seeking ratio, punishment vs. effort0.70.90.91.0-1.0-0.9
Run reversals in cocaine runway, females0.00.00.1-0.0-0.00.3
Run reversals in cocaine runway, males1.41.33.30.6-0.6-1.8
Latency to leave start box in cocaine runway1.11.21.7-1.31.30.4
Latency to leave start box in cocaine runway, F0.80.91.1-1.01.0-0.7
Latency to leave start box in cocaine runway, M1.00.92.6-0.30.31.6
Cd content in liver0.20.20.50.4-0.40.7
Co content in liver0.50.61.40.4-0.41.2
Cu content in liver1.31.54.0-0.50.6-2.0
Fe content in liver3.74.413.10.4-0.3-3.6
K content in liver0.30.30.70.2-0.20.9
Mg content in liver1.01.12.3-0.70.71.5
Mn content in liver0.00.00.0-0.10.10.1
Na content in liver0.50.50.60.7-0.80.5
Rb content in liver3.34.25.1-2.32.21.6
Se content in liver0.91.11.41.0-1.0-1.2
Sr content in liver0.90.81.40.7-0.6-1.2
Zn content in liver2.52.74.31.4-1.4-2.1