Ubxn2a

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA intron excision ratio chr6:27887989:27893164 0.05 0.03 4.8e-03 0.03 0.03 0.04 0.04 9.1e-03 8.4e-03 5.8e-03 4.8e-03
2 BLA intron excision ratio chr6:27893322:27894997 0.04 0.03 9.6e-03 0.02 0.02 0.03 0.03 2.8e-02 2.0e-02 1.2e-02 1.3e-02
3 Eye gene expression ENSRNOG00000068687 0.92 0 1.5e-03 -0.02 -0.01 -0.01 -0.02 7.8e-01 6.3e-01 5.6e-01 9.1e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail1.44.78.4-2.42.90.0
BMI without tail1.43.04.8-2.02.20.0
Body weight1.14.58.5-2.22.90.0
Epididymis fat weight6.114.326.1-4.15.10.0
Glucose0.00.00.1-0.10.30.0
Heart weight2.02.84.8-1.92.20.0
Left kidney weight0.00.00.0-0.20.10.0
Right kidney weight0.20.50.9-0.80.90.0
Tail length0.00.00.00.1-0.20.0
Length with tail0.10.20.4-0.50.60.0
Length without tail0.00.00.10.3-0.10.0
Liver weight, left2.74.36.4-2.52.50.0
Liver weight, right1.93.25.8-2.02.40.0
Parametrial fat weight9.518.530.8-5.05.50.0
Retroperitoneal fat weight14.849.185.9-7.89.30.0
Intraocular pressure0.60.81.5-1.01.20.0
Extensor digitorum longus weight0.72.74.61.9-2.20.0
Soleus weight2.16.010.02.8-3.20.0
Tibialis anterior weight0.51.62.71.5-1.60.0
Tibia length0.92.64.1-1.92.00.0
Number of licking bursts0.80.91.9-1.01.40.0
Food consumed during 24 hour testing period0.00.00.0-0.10.10.0
Times rat made contact with spout1.72.03.01.7-1.70.0
Mean time between licks in bursts0.40.61.2-0.81.10.0
Mean num. licks in bursts2.42.95.11.9-2.30.0
Std. dev. time between licks in bursts0.00.00.00.1-0.10.0
Water consumed over 24 hours0.81.01.61.3-1.20.0
Indifference point 0 sec0.50.91.41.2-1.10.0
Indifference point AUC0.10.10.20.5-0.40.0
Indifference point function ln k0.40.61.20.7-1.10.0
Indifference point function log k0.40.61.20.7-1.10.0
Delay discounting total patch changes 0 sec0.60.91.41.2-1.10.0
Delay discounting total patch changes 12 sec0.00.00.00.10.20.0
Delay discounting total patch changes 18 sec0.70.91.91.4-1.00.0
Delay discounting total patch changes 24 sec0.00.00.00.00.20.0
Delay discounting total patch changes 6 sec0.00.00.10.4-0.10.0
Delay discounting time to switch 0 sec0.20.30.6-0.50.80.0
Delay discounting water rate 0 sec1.82.94.91.9-2.20.0
Delay discounting water rate 12 sec0.30.50.9-0.90.70.0
Delay discounting water rate 18 sec0.20.20.60.3-0.80.0
Delay discounting water rate 24 sec0.10.10.20.4-0.40.0
Delay discounting water rate 6 sec0.10.10.20.2-0.50.0
Locomotor activity1.32.13.6-1.71.90.0
Locomotor testing distance0.61.12.0-1.11.40.0
Locomotor testing rearing0.10.20.3-0.40.60.0
Light reinforcement 10.00.00.1-0.20.10.0
Light reinforcement 20.40.61.10.8-1.10.0
Reaction time number correct0.00.10.10.2-0.30.0
Reaction time mean minus median0.60.81.5-0.91.20.0
Reaction time mean minus median AUC0.91.12.1-1.21.40.0
Reaction time num false alarms0.10.10.4-0.10.60.0
Reaction time num false alarms AUC0.20.30.7-0.40.90.0
Reaction time trials correct on left0.00.10.10.2-0.30.0
Reaction time trials on left0.00.00.10.2-0.20.0
Reaction time mean0.20.30.6-0.70.70.0
Reaction time mean AUC0.30.30.5-0.70.70.0
Median of all reaction times0.10.10.2-0.40.30.0
Reaction time omissions0.20.30.8-0.40.90.0
Reaction time false alarm rate0.40.51.1-0.61.10.0
Reaction time premature initiation rate0.20.20.40.6-0.60.0
Reaction time premature initiations0.30.40.70.7-0.80.0
Std. dev. reaction times0.40.61.2-0.71.10.0
Reaction time trials completed0.00.00.10.2-0.20.0
Reaction time trials AUC0.00.00.00.0-0.10.0
Social response proportion0.00.00.1-0.30.10.0
Social responses0.10.10.2-0.30.40.0
Social time0.50.61.2-1.10.80.0
Conditioned locomotion3.23.85.72.4-2.40.0
Cocaine response after cond. corrected0.10.10.2-0.50.40.0
Cocaine response after cond. not corrected0.10.10.3-0.50.40.0
Cocaine response before conditioning0.20.20.40.5-0.60.0
Saline control response0.50.61.20.8-1.10.0
Condit. Reinf. active minus inactive responses0.10.10.20.4-0.50.0
Condit. Reinf. active-inactive response ratio0.00.00.0-0.10.00.0
Condit. Reinf. active responses0.10.10.2-0.40.20.0
Condit. Reinf. inactive responses0.10.10.1-0.40.30.0
Condit. Reinf. lever presses0.10.10.3-0.50.20.0
Condit. Reinf. lever reinforcers received0.10.20.4-0.60.40.0
Pavlov. Cond. lever latency0.40.50.8-0.80.90.0
Pavlov. Cond. magazine entry latency0.10.10.10.4-0.20.0
Pavlov. Cond. change in total contacts0.00.00.10.3-0.20.0
Pavlov. Cond. index score0.20.30.40.6-0.70.0
Pavlov. Cond. latency score0.30.40.60.8-0.80.0
Pavlov. Cond. lever contacts0.10.10.20.4-0.40.0
Pavlov. Cond. magazine entry number0.00.00.1-0.30.10.0
Pavlov. Cond. intertrial magazine entries0.71.01.5-1.21.20.0
Pavlov. Cond. lever-magazine prob. diff.0.10.20.30.5-0.50.0
Pavlov. Cond. response bias0.30.40.60.8-0.70.0
Conditioned reinforcement - actives1.51.52.61.3-1.60.0
Conditioned reinforcement - inactives1.41.63.11.3-1.80.0
Conditioned locomotion0.30.41.00.3-1.00.0
Intermittent access intake day 1-15 change1.61.62.51.5-1.60.0
Intermittent access intake escalation2.02.03.11.8-1.70.0
Intermittent access intake escalation 20.80.81.41.2-1.00.0
Intermitt. access day 1 inactive lever presses0.00.00.1-0.20.30.0
Intermitt. access day 15 inactive lever presses0.20.20.30.5-0.60.0
Intermitt. access escalation Index2.11.92.9-1.71.60.0
Intermittent access day 1 total infusions0.30.30.70.5-0.90.0
Intermittent access day 15 total infusions0.60.61.20.9-1.10.0
Intermittent access terminal intake (last 3 days)0.10.10.20.1-0.50.0
Intermittent access total infusions0.30.30.70.5-0.90.0
Intermittent access day 1 locomotion0.10.10.1-0.2-0.30.0
Intermittent access day 15 total locomotion0.00.00.0-0.20.10.0
Intermittent access total locomotion0.00.00.0-0.2-0.20.0
Intermittent access standard deviation0.10.10.30.5-0.30.0
Cocaine induced anxiety2.42.84.32.1-2.00.0
Post-drug Anxiety0.30.30.60.8-0.60.0
Baseline Anxiety2.12.33.6-1.81.90.0
Lifetime Intake0.40.40.90.6-0.90.0
Incentive Sensitization - Responses0.00.00.10.0-0.30.0
Incentive Sensitization - Breakpoint0.00.00.1-0.2-0.00.0
Progressive ratio test 1 active lever presses0.00.00.1-0.1-0.30.0
Progressive ratio test 1 breakpoint0.00.00.1-0.1-0.40.0
Progressive ratio test 1 inactive lever presses0.50.61.10.8-1.00.0
Progressive ratio test 2 active lever presses0.30.40.80.5-0.90.0
Progressive ratio test 2 breakpoint0.40.51.00.6-1.00.0
Progressive ratio test 2 inactive lever presses0.70.81.40.9-1.20.0
Total sessions with >9 infusions0.10.10.40.1-0.60.0
Short access day 1 total inactive lever presses0.60.71.30.9-1.10.0
Short access day 10 total inactive lever presses0.40.51.11.0-0.60.0
Short access day 1 total infusions0.60.71.10.9-1.10.0
Short access day 10 total infusions0.40.50.90.7-0.90.0
Short access total infusions0.60.61.20.8-1.10.0
Short access day 1 locomotion0.50.61.20.7-1.10.0
Short access day 10 total locomotion0.10.10.30.2-0.50.0
Short access total locomotion0.30.30.70.4-0.90.0
Compulsive drug intake0.20.20.40.7-0.30.0
One hour access (0.3 mA shock)2.63.15.02.1-2.20.0
One hour access (shock baseline)0.70.81.60.9-1.30.0
Number of responses in last shaping day0.90.91.51.1-1.20.0
Context. condit. distance diff. score1.51.82.91.7-1.60.0
Locomotion velocity, session 10.20.20.4-0.50.60.0
Locomotion distance, session 10.10.10.20.4-0.40.0
Locomotion velocity, session 20.10.10.3-0.30.50.0
Locomotion distance, session 20.00.10.1-0.30.30.0
Locomotion velocity, session 30.20.20.40.7-0.50.0
Locomotion distance, session 30.30.30.60.8-0.60.0
Stereotopy head waving bouts, day 32.32.84.42.0-2.10.0
Stereotopy head waving duration, day 30.30.40.70.7-0.80.0
Locomotion velocity, session 70.10.10.10.4-0.30.0
Locomotion distance, session 70.00.00.1-0.00.30.0
Stereotopy head waving bouts, day 70.10.10.1-0.30.30.0
Stereotopy head waving duration, day 70.00.00.00.1-0.20.0
Locomotion velocity, session 81.31.62.41.6-1.50.0
Locomotion distance, session 81.82.74.12.0-2.00.0
Degree of sensitization distance0.60.61.1-0.81.00.0
Degree of sensitization stereotypy1.01.11.7-1.31.30.0
Condit. Reinf. active minus inactive responses2.73.04.8-2.02.20.0
Condit. Reinf. active-inactive response ratio1.51.62.6-1.51.60.0
Condit. Reinf. active responses0.40.50.9-0.81.00.0
Condit. Reinf. inactive responses0.80.91.31.2-1.20.0
Incentive salience index mean1.01.22.0-1.31.40.0
Condit. Reinf. lever presses0.00.00.0-0.10.10.0
Time in familiar zone, hab. session 10.90.81.4-1.01.20.0
Time in novel zone, hab. session 10.10.10.10.4-0.30.0
Total zone transitions, hab. session 10.20.30.40.6-0.60.0
Total locomotion distance, hab. session 10.10.10.20.3-0.50.0
Locomotion velocity, hab. session 10.10.10.30.3-0.60.0
Time in familiar zone, hab. session 20.00.00.0-0.00.10.0
Time in novel zone, hab. session 20.00.00.00.10.00.0
Total zone transitions, hab. session 20.50.61.11.1-0.90.0
Total locomotion distance, hab. session 20.40.61.01.0-0.80.0
Locomotion velocity, hab. session 20.50.71.21.1-0.90.0
Novel to familiar place preference ratio0.00.00.00.0-0.10.0
Novelty place preference0.10.10.2-0.40.40.0
Time in novel zone, NPP test0.00.00.1-0.20.20.0
Total zone transitions, NPP test0.70.91.61.3-1.10.0
Total locomotion distance, NPP test1.21.72.61.6-1.50.0
Locomotion velocity, NPP test1.11.52.31.5-1.50.0
Pavlov. Cond. lever latency0.10.10.2-0.40.30.0
Pavlov. Cond. magazine entry latency0.10.20.40.6-0.40.0
Pavlov. Cond. change in total contacts0.00.00.00.1-0.10.0
Pavlov. Cond. index score0.10.20.30.6-0.40.0
Pavlov. Cond. latency score0.20.30.60.8-0.50.0
Pavlov. Cond. lever contacts0.20.20.30.6-0.50.0
Pavlov. Cond. magazine entry number0.30.40.7-0.80.60.0
Pavlov. Cond. intertrial magazine entries0.60.81.41.0-1.20.0
Pavlov. Cond. lever-magazine prob. diff.0.30.40.70.8-0.70.0
Pavlov. Cond. response bias0.81.01.61.3-1.20.0
Bone: apparent density4.77.812.03.4-3.50.0
Bone surface1.32.33.61.8-1.90.0
Bone volume2.74.67.42.6-2.70.0
Bone: connectivity density2.33.55.32.3-2.30.0
Bone: cortical apparent density0.10.20.3-0.50.40.0
Bone: cortical area0.00.00.1-0.30.20.0
Bone: cortical porosity1.11.11.91.2-1.40.0
Bone: cortical porosity0.80.91.51.1-1.20.0
Bone: cortical thickness0.61.01.6-1.31.10.0
Bone: cortical thickness0.10.10.30.3-0.50.0
Bone: cortical tissue density0.10.20.3-0.60.50.0
Bone: elastic displacement0.60.61.20.9-1.10.0
Bone: elastic work0.40.51.10.8-1.00.0
Bone: endosteal estimation0.51.21.81.4-1.30.0
Bone: endosteal perimeter0.10.20.40.6-0.60.0
Bone: final force0.10.20.3-0.50.50.0
Bone: final moment0.00.10.1-0.30.30.0
Bone: marrow area0.51.01.61.3-1.20.0
Bone: maximum diameter0.40.61.01.0-1.00.0
Bone: maximum force0.00.00.0-0.20.20.0
Bone: maximum moment0.00.00.0-0.00.00.0
Bone: minimum diameter0.40.71.2-1.01.10.0
Bone: periosteal estimation0.30.60.90.9-0.90.0
Bone: periosteal perimeter0.00.10.10.3-0.30.0
Bone: post-yield work1.31.72.71.6-1.60.0
Bone: stiffness0.10.20.2-0.50.50.0
Bone: tissue strength0.80.81.3-1.11.00.0
Bone: trabecular number3.35.28.22.7-2.90.0
Bone: trabecular spacing2.32.94.5-2.12.10.0
Bone: trabecular thickness1.82.23.51.9-1.80.0
Bone: trabecular tissue density0.20.20.50.7-0.50.0
Breakpoint value in progressive ratio session2.22.53.81.9-1.90.0
Distance traveled before self-admin0.10.10.3-0.40.50.0
Distance traveled after self-admin0.10.10.20.5-0.30.0
Delta time in closed arm before/after self-admin0.20.20.50.7-0.40.0
Delta time in open arm before/after self-admin0.20.20.3-0.50.60.0
Diff in mean of infusions in LGA sessions0.00.00.00.2-0.20.0
Extinction: sum of active levers before priming0.70.71.11.1-0.90.0
Active lever presses in extinction session 60.20.20.30.6-0.50.0
Delta distance traveled before/after self-admin0.00.00.00.2-0.00.0
Delta ambulatory time before/after self-admin0.30.30.50.7-0.70.0
Time in closed arm before self-admin0.10.10.20.4-0.20.0
Time in closed arm after self-admin0.60.60.9-0.91.00.0
Time in open arm before self-admin0.40.40.6-0.80.70.0
Time in open arm after self-admin0.00.00.00.1-0.10.0
Sum of active levers in priming session hrs 5-60.80.81.41.2-1.00.0
Time to tail flick, vehicle, before self-admin1.91.92.9-1.71.70.0
Time to tail flick, vehicle, after self-admin1.51.63.1-1.41.70.0
Time to tail flick, test, before self-admin0.30.30.70.4-0.90.0
Time to tail flick, test, after self-admin0.10.10.20.2-0.40.0
Delta time to tail flick, vehicle, before/after SA0.00.00.10.3-0.00.0
Delta time to tail flick, test, before/after SA0.50.50.70.8-0.80.0
Ambulatory time before self-admin0.40.40.7-0.80.80.0
Ambulatory time after self-admin0.00.00.00.2-0.00.0
Total heroin consumption1.41.72.51.6-1.60.0
Area under the delay curve0.00.00.0-0.00.10.0
Delay disc. indifference point, 0s delay0.91.01.6-1.31.20.0
Delay disc. indifference point, 16s delay0.00.00.10.3-0.20.0
Delay disc. indifference point, 2s delay0.40.50.9-0.90.80.0
Delay disc. indifference point, 24s delay2.72.64.11.9-2.00.0
Delay disc. indifference point, 4s delay0.00.00.0-0.10.20.0
Delay disc. indifference point, 8s delay0.00.00.10.3-0.20.0
Delay discount exponential model param0.10.10.1-0.30.30.0
Delay discount hyperbolic model param0.00.00.0-0.10.10.0
Fecal boli incidents, locomotor time 11.21.32.41.2-1.50.0
Change in fecal boli incidents, locomotor task0.40.40.9-0.61.00.0
Time >=10cm from walls, locomotor time 10.20.20.30.4-0.60.0
Bouts of movement, locomotor time 10.00.00.10.2-0.30.0
Total resting periods, locomotor time 10.30.30.60.7-0.80.0
Rest time, locomotor task time 10.10.10.10.2-0.40.0
Distance moved, locomotor task time 10.50.50.8-0.80.90.0
Vertical activity count, locomotor time 10.60.71.0-1.01.00.0
Time >=10cm from walls, locomotor time 21.61.72.51.6-1.60.0
Bouts of movement, locomotor time 20.00.00.0-0.10.10.0
Total resting periods, locomotor time 20.00.00.00.2-0.20.0
Rest time, locomotor task time 20.00.00.10.2-0.20.0
Distance moved, locomotor task time 20.30.30.6-0.80.60.0
Vertical activity count, locomotor time 20.00.00.1-0.20.10.0
Weight adjusted by age0.00.00.1-0.10.20.0
Seeking ratio, delayed vs. immediate footshock0.60.71.1-1.01.10.0
Locomotion in novel chamber1.92.33.5-1.91.90.0
Locomotion in novel chamber post-restriction0.30.30.6-0.80.60.0
Progressive ratio0.00.00.10.3-0.00.0
Food seeking constrained by brief footshock4.35.28.62.7-2.90.0
Seeking ratio, punishment vs. effort0.70.81.61.0-1.30.0
Run reversals in cocaine runway, females0.50.50.80.8-0.90.0
Run reversals in cocaine runway, males0.00.00.1-0.0-0.20.0
Latency to leave start box in cocaine runway3.13.46.02.5-2.10.0
Latency to leave start box in cocaine runway, F1.71.93.41.8-1.50.0
Latency to leave start box in cocaine runway, M2.52.43.71.9-1.80.0
Cd content in liver0.00.00.10.2-0.20.0
Co content in liver0.20.20.50.3-0.70.0
Cu content in liver0.00.10.1-0.20.40.0
Fe content in liver1.41.72.51.6-1.60.0
K content in liver0.60.61.2-0.81.10.0
Mg content in liver0.20.20.4-0.40.60.0
Mn content in liver0.20.30.5-0.70.50.0
Na content in liver0.20.20.50.4-0.70.0
Rb content in liver0.10.10.30.5-0.20.0
Se content in liver0.20.30.5-0.60.70.0
Sr content in liver0.00.00.00.1-0.20.0
Zn content in liver3.03.35.7-2.12.40.0