ENSRNOG00000068298

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000068298 0.04 0.04 9.3e-03 0 0.01 -0 0 3.4e-01 1.5e-01 4.4e-01 2.0e-01
2 Brain gene expression ENSRNOG00000068298 0.08 0.04 4.7e-11 0.12 0.12 0.12 0.12 2.2e-11 2.0e-11 9.2e-11 4.2e-11
3 PL gene expression ENSRNOG00000068298 0.1 0.05 2.5e-09 0.11 0.11 0.11 0.11 7.1e-09 5.9e-09 2.0e-08 1.6e-08

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail1.13.75.0-2.2-1.8-1.7
BMI without tail0.10.20.4-0.6-0.3-0.3
Body weight0.10.30.3-0.5-0.6-0.6
Epididymis fat weight0.20.40.40.60.70.7
Glucose1.11.82.11.51.31.2
Heart weight0.71.01.0-1.0-1.0-0.9
Left kidney weight0.20.61.01.00.70.6
Right kidney weight0.10.40.50.70.60.6
Tail length0.10.20.40.60.30.2
Length with tail0.93.44.82.21.71.6
Length without tail1.32.93.61.91.71.6
Liver weight, left1.52.42.51.51.61.5
Liver weight, right1.72.82.81.61.71.7
Parametrial fat weight0.51.01.30.91.01.1
Retroperitoneal fat weight0.31.11.11.11.11.0
Intraocular pressure1.52.22.5-1.3-1.5-1.6
Extensor digitorum longus weight12.148.750.3-7.1-6.9-6.9
Soleus weight0.20.50.5-0.6-0.7-0.7
Tibialis anterior weight3.812.913.5-3.7-3.6-3.6
Tibia length0.20.50.60.80.70.6
Number of licking bursts1.51.81.9-1.3-1.4-1.3
Food consumed during 24 hour testing period1.21.51.71.31.21.2
Times rat made contact with spout0.00.00.1-0.3-0.10.0
Mean time between licks in bursts2.83.94.1-1.9-2.0-2.0
Mean num. licks in bursts2.22.73.01.41.71.7
Std. dev. time between licks in bursts0.10.20.3-0.2-0.5-0.5
Water consumed over 24 hours0.30.30.40.60.50.6
Indifference point 0 sec0.10.10.20.40.40.4
Indifference point AUC2.22.62.81.51.71.7
Indifference point function ln k0.81.11.2-1.1-1.1-1.0
Indifference point function log k0.81.11.2-1.1-1.1-1.0
Delay discounting total patch changes 0 sec0.10.20.20.40.40.5
Delay discounting total patch changes 12 sec0.60.80.90.90.90.9
Delay discounting total patch changes 18 sec0.00.00.0-0.2-0.00.0
Delay discounting total patch changes 24 sec1.72.12.21.51.41.4
Delay discounting total patch changes 6 sec1.11.71.71.31.31.3
Delay discounting time to switch 0 sec2.33.63.6-1.9-1.9-1.9
Delay discounting water rate 0 sec0.61.01.01.01.01.0
Delay discounting water rate 12 sec0.10.20.30.50.40.4
Delay discounting water rate 18 sec0.81.11.41.20.90.9
Delay discounting water rate 24 sec0.30.50.70.80.60.6
Delay discounting water rate 6 sec0.40.60.70.90.80.8
Locomotor activity0.30.50.90.90.60.6
Locomotor testing distance0.10.10.20.50.20.2
Locomotor testing rearing0.00.10.1-0.0-0.3-0.3
Light reinforcement 10.40.70.80.90.80.8
Light reinforcement 20.10.10.2-0.2-0.3-0.4
Reaction time number correct0.71.11.3-0.9-1.1-1.1
Reaction time mean minus median1.01.31.3-1.1-1.1-1.1
Reaction time mean minus median AUC0.30.40.5-0.7-0.6-0.6
Reaction time num false alarms0.30.40.50.50.70.7
Reaction time num false alarms AUC0.00.10.10.10.30.3
Reaction time trials correct on left0.71.11.3-0.9-1.1-1.1
Reaction time trials on left0.81.21.4-0.9-1.1-1.2
Reaction time mean0.10.10.2-0.4-0.3-0.2
Reaction time mean AUC0.00.00.0-0.2-0.0-0.0
Median of all reaction times0.00.00.0-0.20.10.1
Reaction time omissions1.41.92.1-1.3-1.4-1.4
Reaction time false alarm rate0.50.80.90.71.01.0
Reaction time premature initiation rate1.01.31.51.01.21.2
Reaction time premature initiations0.40.50.50.70.70.7
Std. dev. reaction times0.20.30.3-0.6-0.5-0.6
Reaction time trials completed0.81.21.4-0.9-1.1-1.2
Reaction time trials AUC1.11.61.9-1.1-1.3-1.4
Social response proportion1.61.72.01.11.41.4
Social responses0.91.11.21.01.11.1
Social time0.20.30.30.50.60.6
Conditioned locomotion0.30.30.40.60.60.5
Cocaine response after cond. corrected0.30.40.40.70.60.6
Cocaine response after cond. not corrected0.00.00.10.20.20.2
Cocaine response before conditioning1.11.31.4-1.2-1.2-1.1
Saline control response0.70.90.90.90.91.0
Condit. Reinf. active minus inactive responses0.00.00.0-0.0-0.1-0.2
Condit. Reinf. active-inactive response ratio0.30.30.3-0.5-0.5-0.5
Condit. Reinf. active responses0.10.20.30.50.30.3
Condit. Reinf. inactive responses1.31.62.01.41.21.2
Condit. Reinf. lever presses0.20.30.70.80.40.2
Condit. Reinf. lever reinforcers received0.20.30.60.80.50.4
Pavlov. Cond. lever latency0.10.10.20.10.40.5
Pavlov. Cond. magazine entry latency1.41.62.0-1.0-1.3-1.4
Pavlov. Cond. change in total contacts0.30.50.7-0.4-0.7-0.8
Pavlov. Cond. index score0.70.91.3-0.6-1.0-1.1
Pavlov. Cond. latency score0.91.21.6-0.8-1.2-1.3
Pavlov. Cond. lever contacts0.10.20.30.0-0.4-0.5
Pavlov. Cond. magazine entry number2.12.63.11.31.71.8
Pavlov. Cond. intertrial magazine entries1.11.41.51.11.21.2
Pavlov. Cond. lever-magazine prob. diff.0.50.71.0-0.5-0.9-1.0
Pavlov. Cond. response bias0.60.91.3-0.5-1.0-1.1
Conditioned reinforcement - actives0.60.60.80.90.70.7
Conditioned reinforcement - inactives3.84.34.52.12.12.1
Conditioned locomotion0.20.20.50.70.40.3
Intermittent access intake day 1-15 change0.30.30.4-0.4-0.6-0.6
Intermittent access intake escalation0.00.00.10.20.10.0
Intermittent access intake escalation 22.02.02.51.61.41.3
Intermitt. access day 1 inactive lever presses4.85.25.52.22.32.3
Intermitt. access day 15 inactive lever presses2.02.22.51.41.51.6
Intermitt. access escalation Index4.74.24.3-2.1-2.0-2.0
Intermittent access day 1 total infusions0.20.20.20.50.40.5
Intermittent access day 15 total infusions0.80.91.11.00.90.9
Intermittent access terminal intake (last 3 days)1.82.02.41.51.31.3
Intermittent access total infusions0.40.40.50.70.60.6
Intermittent access day 1 locomotion0.40.40.40.60.60.6
Intermittent access day 15 total locomotion1.21.31.61.31.11.1
Intermittent access total locomotion0.10.10.20.40.30.4
Intermittent access standard deviation0.80.91.11.10.90.9
Cocaine induced anxiety0.60.70.8-0.9-0.8-0.8
Post-drug Anxiety0.10.20.20.40.40.4
Baseline Anxiety0.90.91.31.10.90.8
Lifetime Intake0.10.10.20.40.30.3
Incentive Sensitization - Responses0.70.70.70.80.80.8
Incentive Sensitization - Breakpoint0.80.80.90.90.90.9
Progressive ratio test 1 active lever presses0.30.30.40.60.50.4
Progressive ratio test 1 breakpoint0.10.10.20.50.30.2
Progressive ratio test 1 inactive lever presses5.45.86.22.32.42.5
Progressive ratio test 2 active lever presses1.61.71.81.41.31.3
Progressive ratio test 2 breakpoint0.80.91.01.00.90.9
Progressive ratio test 2 inactive lever presses3.33.84.02.01.91.9
Total sessions with >9 infusions1.51.71.8-1.2-1.3-1.3
Short access day 1 total inactive lever presses2.52.83.21.81.61.6
Short access day 10 total inactive lever presses1.41.61.61.31.21.3
Short access day 1 total infusions0.00.00.10.20.20.1
Short access day 10 total infusions0.00.00.00.1-0.1-0.1
Short access total infusions0.20.20.2-0.4-0.5-0.5
Short access day 1 locomotion0.00.00.0-0.1-0.2-0.2
Short access day 10 total locomotion0.10.10.10.20.30.4
Short access total locomotion0.10.10.1-0.4-0.4-0.3
Compulsive drug intake0.50.50.5-0.7-0.6-0.7
One hour access (0.3 mA shock)0.40.50.90.90.60.5
One hour access (shock baseline)1.21.41.71.31.11.1
Number of responses in last shaping day0.20.20.2-0.4-0.4-0.4
Context. condit. distance diff. score1.51.92.21.51.31.3
Locomotion velocity, session 10.30.30.3-0.5-0.5-0.6
Locomotion distance, session 10.50.70.90.90.80.8
Locomotion velocity, session 20.50.60.90.90.70.7
Locomotion distance, session 20.30.40.60.80.60.6
Locomotion velocity, session 31.11.21.41.21.11.1
Locomotion distance, session 30.20.20.30.60.50.4
Stereotopy head waving bouts, day 30.20.20.3-0.5-0.4-0.5
Stereotopy head waving duration, day 30.10.10.1-0.3-0.2-0.3
Locomotion velocity, session 71.41.51.61.21.31.3
Locomotion distance, session 71.31.71.71.31.31.3
Stereotopy head waving bouts, day 70.20.30.3-0.6-0.5-0.5
Stereotopy head waving duration, day 70.00.00.1-0.3-0.1-0.1
Locomotion velocity, session 80.91.11.11.11.01.0
Locomotion distance, session 82.03.03.51.91.71.7
Degree of sensitization distance0.90.91.00.91.01.0
Degree of sensitization stereotypy0.00.00.0-0.2-0.2-0.2
Condit. Reinf. active minus inactive responses0.91.01.1-1.0-1.0-1.0
Condit. Reinf. active-inactive response ratio4.34.64.8-2.2-2.1-2.1
Condit. Reinf. active responses0.00.00.1-0.2-0.2-0.2
Condit. Reinf. inactive responses1.11.21.41.21.11.1
Incentive salience index mean0.10.10.1-0.4-0.3-0.3
Condit. Reinf. lever presses0.00.00.00.10.10.1
Time in familiar zone, hab. session 10.30.30.40.60.50.5
Time in novel zone, hab. session 10.30.30.5-0.7-0.5-0.4
Total zone transitions, hab. session 10.20.20.50.70.40.3
Total locomotion distance, hab. session 12.23.23.92.01.71.7
Locomotion velocity, hab. session 11.82.63.31.81.51.5
Time in familiar zone, hab. session 20.30.30.4-0.6-0.6-0.6
Time in novel zone, hab. session 20.20.20.20.20.50.5
Total zone transitions, hab. session 20.30.40.5-0.5-0.7-0.6
Total locomotion distance, hab. session 20.00.00.10.20.20.2
Locomotion velocity, hab. session 20.10.10.20.40.30.3
Novel to familiar place preference ratio0.00.00.0-0.2-0.00.0
Novelty place preference0.10.10.1-0.4-0.2-0.2
Time in novel zone, NPP test0.00.00.0-0.10.00.1
Total zone transitions, NPP test0.00.00.1-0.2-0.2-0.2
Total locomotion distance, NPP test0.00.00.00.1-0.1-0.1
Locomotion velocity, NPP test0.10.10.1-0.2-0.4-0.4
Pavlov. Cond. lever latency2.02.62.7-1.5-1.6-1.6
Pavlov. Cond. magazine entry latency0.10.20.30.50.40.4
Pavlov. Cond. change in total contacts0.50.60.60.70.80.8
Pavlov. Cond. index score1.01.31.41.11.21.1
Pavlov. Cond. latency score1.21.61.71.21.31.3
Pavlov. Cond. lever contacts2.02.42.51.51.61.5
Pavlov. Cond. magazine entry number0.00.00.0-0.2-0.2-0.2
Pavlov. Cond. intertrial magazine entries0.40.50.50.70.70.7
Pavlov. Cond. lever-magazine prob. diff.1.21.51.51.21.21.2
Pavlov. Cond. response bias1.11.31.41.21.21.1
Bone: apparent density1.11.92.0-1.3-1.4-1.4
Bone surface1.22.12.4-1.4-1.5-1.5
Bone volume0.10.20.3-0.4-0.5-0.5
Bone: connectivity density2.64.04.1-2.0-2.0-2.0
Bone: cortical apparent density0.10.10.10.00.30.4
Bone: cortical area0.20.30.4-0.7-0.6-0.5
Bone: cortical porosity2.02.22.2-1.5-1.5-1.5
Bone: cortical porosity3.23.43.6-1.9-1.8-1.8
Bone: cortical thickness1.52.42.9-1.7-1.5-1.5
Bone: cortical thickness0.10.20.2-0.3-0.4-0.4
Bone: cortical tissue density0.10.10.1-0.00.30.3
Bone: elastic displacement0.80.91.0-0.8-1.0-1.0
Bone: elastic work1.92.42.7-1.4-1.6-1.6
Bone: endosteal estimation1.84.04.32.11.92.0
Bone: endosteal perimeter0.00.00.00.1-0.2-0.2
Bone: final force0.30.50.6-0.7-0.8-0.7
Bone: final moment0.30.60.6-0.7-0.8-0.8
Bone: marrow area1.83.84.12.01.91.9
Bone: maximum diameter0.61.01.2-1.1-1.0-0.9
Bone: maximum force0.20.30.4-0.5-0.6-0.6
Bone: maximum moment0.20.30.4-0.5-0.6-0.5
Bone: minimum diameter3.05.66.02.52.32.3
Bone: periosteal estimation0.20.50.50.70.60.7
Bone: periosteal perimeter0.20.30.4-0.5-0.6-0.5
Bone: post-yield work0.10.20.20.40.50.5
Bone: stiffness0.20.30.30.50.50.5
Bone: tissue strength0.30.30.40.60.50.5
Bone: trabecular number0.61.01.0-1.0-1.0-0.9
Bone: trabecular spacing0.50.60.80.60.90.8
Bone: trabecular thickness0.00.00.00.2-0.1-0.1
Bone: trabecular tissue density0.40.60.6-0.8-0.7-0.8
Breakpoint value in progressive ratio session0.00.00.00.10.20.2
Distance traveled before self-admin0.70.80.90.90.90.9
Distance traveled after self-admin3.43.84.42.11.91.9
Delta time in closed arm before/after self-admin0.60.60.7-0.8-0.8-0.8
Delta time in open arm before/after self-admin1.01.01.01.01.01.0
Diff in mean of infusions in LGA sessions0.00.00.0-0.1-0.1-0.1
Extinction: sum of active levers before priming0.20.20.20.40.40.4
Active lever presses in extinction session 60.10.10.10.30.30.3
Delta distance traveled before/after self-admin0.20.30.30.50.50.5
Delta ambulatory time before/after self-admin0.00.00.00.20.20.2
Time in closed arm before self-admin1.31.51.61.21.21.3
Time in closed arm after self-admin0.50.50.60.80.70.7
Time in open arm before self-admin1.21.31.4-1.1-1.2-1.1
Time in open arm after self-admin0.10.10.20.30.40.4
Sum of active levers in priming session hrs 5-60.70.70.70.80.80.9
Time to tail flick, vehicle, before self-admin0.20.20.20.50.40.3
Time to tail flick, vehicle, after self-admin1.92.02.71.61.31.2
Time to tail flick, test, before self-admin0.20.20.20.30.40.5
Time to tail flick, test, after self-admin3.33.33.51.91.81.8
Delta time to tail flick, vehicle, before/after SA1.01.01.11.11.00.9
Delta time to tail flick, test, before/after SA1.91.71.91.41.31.2
Ambulatory time before self-admin1.61.61.71.31.31.3
Ambulatory time after self-admin2.62.93.41.81.61.6
Total heroin consumption0.80.91.01.00.91.0
Area under the delay curve0.10.10.20.40.40.3
Delay disc. indifference point, 0s delay0.00.00.0-0.1-0.0-0.1
Delay disc. indifference point, 16s delay0.00.00.0-0.2-0.1-0.2
Delay disc. indifference point, 2s delay3.94.44.52.12.12.1
Delay disc. indifference point, 24s delay0.00.00.00.20.10.1
Delay disc. indifference point, 4s delay0.50.50.60.70.80.7
Delay disc. indifference point, 8s delay0.70.70.8-0.8-0.8-0.9
Delay discount exponential model param0.20.20.3-0.5-0.5-0.4
Delay discount hyperbolic model param0.60.60.7-0.8-0.8-0.7
Fecal boli incidents, locomotor time 11.82.02.3-1.2-1.5-1.5
Change in fecal boli incidents, locomotor task0.10.10.1-0.3-0.2-0.1
Time >=10cm from walls, locomotor time 11.31.31.5-1.0-1.2-1.2
Bouts of movement, locomotor time 10.70.80.8-0.9-0.9-0.9
Total resting periods, locomotor time 10.60.70.7-0.8-0.8-0.8
Rest time, locomotor task time 10.00.00.00.2-0.2-0.2
Distance moved, locomotor task time 10.00.00.0-0.10.00.0
Vertical activity count, locomotor time 10.50.50.70.50.80.8
Time >=10cm from walls, locomotor time 20.60.60.7-0.7-0.8-0.8
Bouts of movement, locomotor time 20.80.91.00.91.01.0
Total resting periods, locomotor time 20.70.70.80.80.90.9
Rest time, locomotor task time 20.30.40.50.70.50.6
Distance moved, locomotor task time 22.83.23.3-1.8-1.8-1.8
Vertical activity count, locomotor time 20.40.40.4-0.6-0.6-0.7
Weight adjusted by age0.91.01.1-0.9-1.0-1.0
Seeking ratio, delayed vs. immediate footshock0.50.60.70.80.80.8
Locomotion in novel chamber0.10.10.1-0.3-0.3-0.2
Locomotion in novel chamber post-restriction0.81.01.21.11.00.9
Progressive ratio1.11.31.5-1.0-1.2-1.2
Food seeking constrained by brief footshock0.30.40.4-0.6-0.6-0.6
Seeking ratio, punishment vs. effort0.91.11.40.91.11.2
Run reversals in cocaine runway, females1.41.41.41.21.11.2
Run reversals in cocaine runway, males0.10.10.1-0.4-0.4-0.4
Latency to leave start box in cocaine runway0.50.60.70.70.80.8
Latency to leave start box in cocaine runway, F2.73.03.11.71.81.8
Latency to leave start box in cocaine runway, M2.01.92.0-1.4-1.4-1.4
Cd content in liver2.42.62.8-1.7-1.6-1.6
Co content in liver0.10.10.2-0.2-0.4-0.4
Cu content in liver0.80.91.01.01.00.9
Fe content in liver0.40.40.5-0.7-0.6-0.6
K content in liver4.64.64.92.02.22.2
Mg content in liver3.83.94.11.92.02.0
Mn content in liver0.70.80.80.90.90.9
Na content in liver0.50.50.50.60.70.7
Rb content in liver0.40.50.6-0.8-0.7-0.7
Se content in liver1.21.41.61.31.21.1
Sr content in liver0.60.50.6-0.7-0.7-0.7
Zn content in liver1.82.02.01.41.41.4