Selenow

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000067799 0.34 0.17 7.3e-15 0.13 0.13 0.12 0.12 2.4e-14 8.1e-14 1.0e-12 8.9e-14
2 Brain gene expression ENSRNOG00000067799 0.07 0.05 3.4e-07 0.08 0.07 0.07 0.07 8.0e-08 4.3e-07 9.3e-07 5.3e-07
3 Liver gene expression ENSRNOG00000067799 0.66 0.12 0.0e+00 0.23 0.24 0.24 0.23 4.4e-25 2.1e-26 2.8e-26 7.3e-25

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.82.74.02.0-2.00.6
BMI without tail1.83.75.22.3-2.21.1
Body weight1.35.77.22.7-2.12.3
Epididymis fat weight0.92.13.7-1.11.2-1.9
Glucose1.92.93.9-1.51.6-2.0
Heart weight0.81.12.10.5-1.41.0
Left kidney weight7.722.130.84.4-4.05.5
Right kidney weight4.913.917.23.5-3.54.1
Tail length0.51.42.51.1-0.81.6
Length with tail0.72.55.61.2-0.72.4
Length without tail0.30.81.80.6-0.21.4
Liver weight, left11.117.921.24.6-4.23.9
Liver weight, right3.15.16.72.3-2.61.8
Parametrial fat weight0.91.75.1-0.3-0.0-2.3
Retroperitoneal fat weight0.93.18.8-0.50.6-3.0
Intraocular pressure0.20.30.6-0.50.8-0.3
Extensor digitorum longus weight1.55.97.22.4-2.12.7
Soleus weight0.30.80.90.9-0.90.8
Tibialis anterior weight2.37.910.33.2-3.11.9
Tibia length2.05.711.31.7-1.63.4
Number of licking bursts2.32.73.21.7-1.81.4
Food consumed during 24 hour testing period3.13.85.6-1.92.4-1.5
Times rat made contact with spout0.60.71.0-0.71.0-0.7
Mean time between licks in bursts0.10.10.10.3-0.3-0.2
Mean num. licks in bursts3.84.66.1-2.12.5-1.8
Std. dev. time between licks in bursts0.81.01.21.0-0.91.1
Water consumed over 24 hours0.50.61.2-0.71.1-0.1
Indifference point 0 sec0.00.10.10.2-0.3-0.3
Indifference point AUC3.03.54.62.2-1.81.7
Indifference point function ln k2.13.05.2-2.31.9-0.6
Indifference point function log k2.13.05.2-2.31.9-0.6
Delay discounting total patch changes 0 sec0.10.10.20.3-0.4-0.2
Delay discounting total patch changes 12 sec1.31.72.51.6-1.31.0
Delay discounting total patch changes 18 sec1.41.82.71.6-1.21.1
Delay discounting total patch changes 24 sec1.72.22.81.7-1.31.4
Delay discounting total patch changes 6 sec1.01.52.51.6-1.30.6
Delay discounting time to switch 0 sec2.64.08.2-1.21.5-2.9
Delay discounting water rate 0 sec2.03.25.11.5-1.52.3
Delay discounting water rate 12 sec0.20.30.7-0.30.10.8
Delay discounting water rate 18 sec0.10.10.1-0.30.10.3
Delay discounting water rate 24 sec0.20.20.4-0.60.50.3
Delay discounting water rate 6 sec2.94.28.91.3-1.33.0
Locomotor activity1.52.43.01.7-1.71.2
Locomotor testing distance0.71.11.41.1-1.21.0
Locomotor testing rearing5.68.89.02.9-3.03.0
Light reinforcement 10.61.01.50.8-1.01.2
Light reinforcement 21.11.42.41.2-1.60.6
Reaction time number correct1.72.52.61.6-1.51.6
Reaction time mean minus median0.60.81.3-0.81.2-0.7
Reaction time mean minus median AUC0.10.20.4-0.20.60.0
Reaction time num false alarms4.86.57.92.8-2.62.3
Reaction time num false alarms AUC3.75.26.52.5-2.32.0
Reaction time trials correct on left1.72.52.61.6-1.51.6
Reaction time trials on left1.82.52.71.6-1.61.6
Reaction time mean1.31.82.1-1.51.2-1.3
Reaction time mean AUC1.21.62.0-1.31.1-1.4
Median of all reaction times1.11.51.8-1.31.0-1.3
Reaction time omissions0.30.30.80.5-0.90.1
Reaction time false alarm rate0.60.81.21.1-0.90.6
Reaction time premature initiation rate1.82.43.1-1.71.1-1.8
Reaction time premature initiations0.40.50.9-0.80.3-1.0
Std. dev. reaction times0.81.01.2-1.01.1-0.9
Reaction time trials completed1.82.52.71.6-1.61.6
Reaction time trials AUC2.33.33.51.8-1.91.7
Social response proportion1.01.11.51.0-1.20.9
Social responses2.43.24.71.5-1.62.2
Social time0.60.81.3-0.71.10.8
Conditioned locomotion0.10.10.20.4-0.40.3
Cocaine response after cond. corrected0.20.30.40.3-0.6-0.6
Cocaine response after cond. not corrected0.60.71.20.7-1.10.6
Cocaine response before conditioning3.23.98.21.4-1.32.9
Saline control response1.01.42.50.9-0.91.6
Condit. Reinf. active minus inactive responses0.30.41.1-0.30.31.1
Condit. Reinf. active-inactive response ratio0.40.41.2-0.20.11.1
Condit. Reinf. active responses0.40.51.2-0.40.51.1
Condit. Reinf. inactive responses0.20.20.4-0.50.7-0.0
Condit. Reinf. lever presses0.60.81.10.8-0.81.1
Condit. Reinf. lever reinforcers received0.50.71.9-0.30.41.4
Pavlov. Cond. lever latency0.10.10.2-0.40.4-0.1
Pavlov. Cond. magazine entry latency0.10.10.20.2-0.2-0.5
Pavlov. Cond. change in total contacts0.20.30.5-0.70.7-0.1
Pavlov. Cond. index score0.00.00.10.3-0.20.0
Pavlov. Cond. latency score0.00.00.10.0-0.0-0.4
Pavlov. Cond. lever contacts0.30.40.50.7-0.60.6
Pavlov. Cond. magazine entry number0.20.30.50.4-0.40.7
Pavlov. Cond. intertrial magazine entries0.50.61.7-0.10.31.3
Pavlov. Cond. lever-magazine prob. diff.0.10.10.20.4-0.30.2
Pavlov. Cond. response bias0.20.20.40.4-0.30.7
Conditioned reinforcement - actives1.11.11.61.3-1.20.4
Conditioned reinforcement - inactives1.51.72.30.9-1.41.5
Conditioned locomotion0.80.91.41.2-1.10.4
Intermittent access intake day 1-15 change0.10.10.20.40.10.5
Intermittent access intake escalation0.00.00.10.30.20.2
Intermittent access intake escalation 20.10.10.20.20.30.5
Intermitt. access day 1 inactive lever presses0.91.02.20.7-1.50.5
Intermitt. access day 15 inactive lever presses2.93.23.21.8-1.81.8
Intermitt. access escalation Index0.10.10.20.4-0.1-0.5
Intermittent access day 1 total infusions0.91.01.20.9-1.10.9
Intermittent access day 15 total infusions0.20.20.40.6-0.50.2
Intermittent access terminal intake (last 3 days)0.10.10.20.4-0.30.2
Intermittent access total infusions0.60.60.80.8-0.90.6
Intermittent access day 1 locomotion0.20.20.3-0.60.0-0.6
Intermittent access day 15 total locomotion0.30.30.6-0.40.2-0.8
Intermittent access total locomotion0.10.10.2-0.0-0.4-0.1
Intermittent access standard deviation1.01.12.41.6-0.70.6
Cocaine induced anxiety1.41.63.4-1.81.2-0.4
Post-drug Anxiety0.10.10.3-0.5-0.0-0.1
Baseline Anxiety0.20.30.40.6-0.5-0.3
Lifetime Intake0.60.60.90.8-1.00.5
Incentive Sensitization - Responses0.30.30.40.5-0.60.4
Incentive Sensitization - Breakpoint0.30.30.50.6-0.70.3
Progressive ratio test 1 active lever presses0.40.40.90.1-0.51.0
Progressive ratio test 1 breakpoint0.30.30.70.1-0.40.8
Progressive ratio test 1 inactive lever presses2.62.84.31.2-1.62.1
Progressive ratio test 2 active lever presses0.40.40.80.6-0.90.4
Progressive ratio test 2 breakpoint0.40.40.80.6-0.90.4
Progressive ratio test 2 inactive lever presses0.91.11.50.9-0.91.2
Total sessions with >9 infusions2.42.73.21.4-1.81.7
Short access day 1 total inactive lever presses1.51.72.31.3-1.51.1
Short access day 10 total inactive lever presses0.40.50.7-0.90.4-0.7
Short access day 1 total infusions0.30.40.50.4-0.70.6
Short access day 10 total infusions2.22.43.01.7-1.61.2
Short access total infusions0.30.40.80.6-0.90.2
Short access day 1 locomotion0.30.40.70.3-0.80.5
Short access day 10 total locomotion0.80.91.3-1.10.7-0.9
Short access total locomotion0.20.20.3-0.4-0.0-0.6
Compulsive drug intake0.10.10.3-0.50.2-0.2
One hour access (0.3 mA shock)0.00.00.1-0.30.1-0.1
One hour access (shock baseline)0.91.11.81.3-0.90.7
Number of responses in last shaping day0.70.71.10.9-1.10.4
Context. condit. distance diff. score0.10.10.20.30.10.4
Locomotion velocity, session 10.70.71.0-1.01.0-0.3
Locomotion distance, session 10.30.40.9-0.40.50.9
Locomotion velocity, session 21.01.11.50.9-1.01.2
Locomotion distance, session 21.21.73.50.9-0.81.9
Locomotion velocity, session 30.10.10.20.4-0.20.4
Locomotion distance, session 30.40.40.8-0.50.90.5
Stereotopy head waving bouts, day 30.20.20.40.5-0.6-0.2
Stereotopy head waving duration, day 30.10.10.20.2-0.3-0.5
Locomotion velocity, session 71.21.31.6-1.31.3-0.9
Locomotion distance, session 70.10.10.2-0.30.4-0.1
Stereotopy head waving bouts, day 70.20.20.40.3-0.30.6
Stereotopy head waving duration, day 70.30.40.50.6-0.60.7
Locomotion velocity, session 80.10.10.3-0.30.5-0.0
Locomotion distance, session 80.30.41.00.4-0.01.0
Degree of sensitization distance0.10.10.20.1-0.4-0.4
Degree of sensitization stereotypy1.01.11.80.9-0.81.3
Condit. Reinf. active minus inactive responses0.70.81.11.0-1.00.4
Condit. Reinf. active-inactive response ratio0.80.91.31.1-1.10.2
Condit. Reinf. active responses0.40.50.70.6-0.80.6
Condit. Reinf. inactive responses0.20.20.4-0.70.40.4
Incentive salience index mean0.70.80.90.9-0.90.8
Condit. Reinf. lever presses0.30.40.60.5-0.60.8
Time in familiar zone, hab. session 10.40.41.0-0.30.31.0
Time in novel zone, hab. session 11.11.01.61.3-1.20.2
Total zone transitions, hab. session 10.30.41.1-0.10.21.1
Total locomotion distance, hab. session 10.40.61.2-0.81.1-0.0
Locomotion velocity, hab. session 11.01.52.3-1.31.5-0.6
Time in familiar zone, hab. session 20.10.10.2-0.40.20.2
Time in novel zone, hab. session 20.20.20.40.6-0.30.2
Total zone transitions, hab. session 20.81.12.80.4-0.41.7
Total locomotion distance, hab. session 20.50.61.2-0.81.1-0.3
Locomotion velocity, hab. session 20.30.40.8-0.60.9-0.1
Novel to familiar place preference ratio0.70.80.80.9-0.80.9
Novelty place preference0.60.70.90.8-0.70.9
Time in novel zone, NPP test0.70.71.00.8-0.71.0
Total zone transitions, NPP test0.20.30.60.5-0.30.8
Total locomotion distance, NPP test0.10.10.20.30.10.5
Locomotion velocity, NPP test0.10.20.40.30.10.6
Pavlov. Cond. lever latency0.60.81.1-0.91.0-0.8
Pavlov. Cond. magazine entry latency1.01.31.91.3-1.40.7
Pavlov. Cond. change in total contacts0.00.00.1-0.0-0.1-0.3
Pavlov. Cond. index score1.21.62.01.4-1.40.9
Pavlov. Cond. latency score0.60.81.11.0-1.10.5
Pavlov. Cond. lever contacts1.01.21.51.1-1.20.9
Pavlov. Cond. magazine entry number0.81.01.2-1.11.0-0.8
Pavlov. Cond. intertrial magazine entries0.30.30.5-0.70.6-0.3
Pavlov. Cond. lever-magazine prob. diff.1.51.82.41.5-1.61.0
Pavlov. Cond. response bias3.03.64.22.0-2.01.6
Bone: apparent density0.40.61.1-0.81.1-0.3
Bone surface0.40.72.2-0.10.11.5
Bone volume0.30.51.1-0.40.61.0
Bone: connectivity density0.10.20.2-0.50.5-0.1
Bone: cortical apparent density0.10.20.5-0.10.1-0.7
Bone: cortical area0.61.01.80.8-0.61.4
Bone: cortical porosity0.10.10.20.10.1-0.5
Bone: cortical porosity0.20.20.40.6-0.40.2
Bone: cortical thickness0.00.10.20.10.1-0.5
Bone: cortical thickness0.20.20.40.4-0.20.7
Bone: cortical tissue density0.10.20.5-0.10.1-0.7
Bone: elastic displacement2.83.14.1-1.71.5-2.0
Bone: elastic work0.20.20.4-0.60.5-0.2
Bone: endosteal estimation0.40.92.7-0.00.01.6
Bone: endosteal perimeter0.20.51.50.0-0.01.2
Bone: final force1.01.63.40.9-0.71.9
Bone: final moment1.21.94.40.9-0.72.1
Bone: marrow area0.51.02.90.0-0.01.7
Bone: maximum diameter2.54.76.42.0-1.92.5
Bone: maximum force0.61.12.60.6-0.51.6
Bone: maximum moment0.71.33.20.6-0.41.8
Bone: minimum diameter0.91.64.50.4-0.22.1
Bone: periosteal estimation0.71.43.70.5-0.41.9
Bone: periosteal perimeter0.61.02.70.3-0.21.6
Bone: post-yield work0.20.20.6-0.10.30.8
Bone: stiffness1.92.95.11.5-1.22.3
Bone: tissue strength0.10.10.1-0.20.3-0.3
Bone: trabecular number0.50.71.2-0.91.1-0.4
Bone: trabecular spacing0.30.30.60.5-0.80.4
Bone: trabecular thickness0.10.20.30.5-0.20.5
Bone: trabecular tissue density0.50.60.80.9-0.9-0.7
Breakpoint value in progressive ratio session3.53.97.6-1.61.2-2.8
Distance traveled before self-admin0.30.30.9-0.1-0.11.0
Distance traveled after self-admin0.60.71.1-1.10.9-0.1
Delta time in closed arm before/after self-admin0.20.20.20.40.30.5
Delta time in open arm before/after self-admin0.20.20.30.1-0.50.4
Diff in mean of infusions in LGA sessions1.61.82.1-1.31.5-1.3
Extinction: sum of active levers before priming0.80.81.0-1.01.0-0.7
Active lever presses in extinction session 61.31.32.01.4-1.20.7
Delta distance traveled before/after self-admin0.70.71.0-0.71.0-0.9
Delta ambulatory time before/after self-admin0.80.81.0-0.71.0-1.0
Time in closed arm before self-admin0.20.20.40.4-0.60.2
Time in closed arm after self-admin0.00.00.10.20.20.1
Time in open arm before self-admin0.10.10.2-0.50.3-0.1
Time in open arm after self-admin0.00.00.1-0.3-0.20.1
Sum of active levers in priming session hrs 5-61.91.92.7-1.31.1-1.6
Time to tail flick, vehicle, before self-admin0.20.20.4-0.3-0.60.0
Time to tail flick, vehicle, after self-admin0.20.20.4-0.30.6-0.4
Time to tail flick, test, before self-admin1.91.92.8-1.71.6-0.5
Time to tail flick, test, after self-admin0.00.00.10.20.20.1
Delta time to tail flick, vehicle, before/after SA0.20.20.40.30.6-0.1
Delta time to tail flick, test, before/after SA0.80.71.01.0-1.00.2
Ambulatory time before self-admin0.20.30.7-0.30.00.8
Ambulatory time after self-admin1.11.22.0-1.41.3-0.4
Total heroin consumption0.10.20.4-0.0-0.3-0.7
Area under the delay curve0.60.61.3-0.60.2-1.1
Delay disc. indifference point, 0s delay0.20.20.3-0.60.6-0.0
Delay disc. indifference point, 16s delay0.70.71.8-0.5-0.1-1.3
Delay disc. indifference point, 2s delay0.50.60.8-0.70.6-0.9
Delay disc. indifference point, 24s delay0.40.40.90.3-0.9-0.4
Delay disc. indifference point, 4s delay0.10.10.10.3-0.40.4
Delay disc. indifference point, 8s delay1.01.01.6-1.00.7-1.3
Delay discount exponential model param0.40.41.00.5-0.11.0
Delay discount hyperbolic model param0.20.20.60.4-0.10.8
Fecal boli incidents, locomotor time 10.20.30.6-0.40.8-0.1
Change in fecal boli incidents, locomotor task0.60.61.4-0.50.3-1.2
Time >=10cm from walls, locomotor time 10.30.30.7-0.40.0-0.8
Bouts of movement, locomotor time 11.01.21.7-1.21.3-0.5
Total resting periods, locomotor time 12.02.22.7-1.61.6-1.2
Rest time, locomotor task time 10.30.30.5-0.70.70.2
Distance moved, locomotor task time 10.40.50.80.7-0.90.1
Vertical activity count, locomotor time 10.10.20.20.2-0.5-0.4
Time >=10cm from walls, locomotor time 20.10.10.20.10.4-0.2
Bouts of movement, locomotor time 21.51.62.3-1.51.1-1.2
Total resting periods, locomotor time 22.02.13.1-1.71.3-1.3
Rest time, locomotor task time 21.41.72.3-1.51.2-1.1
Distance moved, locomotor task time 21.61.82.21.5-1.11.4
Vertical activity count, locomotor time 20.80.81.01.0-0.71.0
Weight adjusted by age1.01.22.10.9-0.81.4
Seeking ratio, delayed vs. immediate footshock1.82.02.9-1.61.7-0.8
Locomotion in novel chamber3.24.05.7-2.11.4-2.4
Locomotion in novel chamber post-restriction0.91.01.2-0.81.1-1.1
Progressive ratio0.10.10.3-0.30.5-0.1
Food seeking constrained by brief footshock3.13.85.3-2.32.3-0.9
Seeking ratio, punishment vs. effort0.80.91.4-1.21.1-0.5
Run reversals in cocaine runway, females1.11.12.0-1.00.5-1.4
Run reversals in cocaine runway, males0.80.81.20.9-0.51.1
Latency to leave start box in cocaine runway0.40.50.5-0.60.7-0.7
Latency to leave start box in cocaine runway, F0.20.20.3-0.40.3-0.5
Latency to leave start box in cocaine runway, M0.10.10.30.3-0.10.6
Cd content in liver0.10.10.3-0.30.60.1
Co content in liver1.31.52.4-1.11.6-1.0
Cu content in liver0.70.81.70.7-0.61.3
Fe content in liver0.30.30.50.7-0.20.6
K content in liver1.81.82.41.3-1.21.6
Mg content in liver1.51.52.11.3-1.41.0
Mn content in liver1.11.31.71.3-1.30.8
Na content in liver0.10.10.20.20.1-0.4
Rb content in liver0.40.51.10.6-0.41.0
Se content in liver5.06.17.92.8-2.81.6
Sr content in liver0.40.30.80.2-0.4-0.9
Zn content in liver1.11.22.11.0-1.50.6