Aldh18a1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000067262 0.05 0.03 1.2e-05 0.08 0.06 0.07 0.07 1.0e-07 6.9e-06 5.4e-07 4.1e-07
2 NAcc gene expression ENSRNOG00000067262 0.03 0.02 9.2e-03 0.02 0.02 0 0.01 9.4e-03 1.7e-02 2.0e-01 7.2e-02
3 PL gene expression ENSRNOG00000067262 0.04 0.03 1.8e-03 0.04 0.03 0.03 0.03 1.1e-03 2.0e-03 4.3e-03 2.6e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.93.03.11.71.71.8
BMI without tail1.53.23.61.71.71.9
Body weight0.72.93.01.71.71.7
Epididymis fat weight2.04.65.22.12.12.3
Glucose0.10.10.20.30.30.4
Heart weight0.20.30.30.60.60.6
Left kidney weight0.00.00.0-0.1-0.10.0
Right kidney weight0.00.00.1-0.2-0.2-0.2
Tail length0.20.50.50.60.60.7
Length with tail0.00.00.00.00.0-0.0
Length without tail0.10.20.3-0.4-0.4-0.5
Liver weight, left0.10.10.20.30.30.4
Liver weight, right0.91.51.51.21.21.2
Parametrial fat weight0.40.70.80.90.90.8
Retroperitoneal fat weight0.92.93.11.71.71.8
Intraocular pressure0.20.20.30.60.60.3
Extensor digitorum longus weight0.10.20.40.40.40.6
Soleus weight0.61.92.11.31.31.4
Tibialis anterior weight0.20.70.90.80.81.0
Tibia length0.00.00.10.00.00.3
Number of licking bursts2.93.43.4-1.9-1.9-1.8
Food consumed during 24 hour testing period0.81.01.1-1.0-1.0-1.0
Times rat made contact with spout0.50.60.6-0.8-0.8-0.7
Mean time between licks in bursts0.10.20.20.40.40.4
Mean num. licks in bursts2.32.82.81.71.71.7
Std. dev. time between licks in bursts0.40.40.5-0.7-0.7-0.6
Water consumed over 24 hours0.50.60.7-0.8-0.8-0.8
Indifference point 0 sec0.00.10.1-0.3-0.3-0.2
Indifference point AUC4.14.85.7-2.1-2.1-2.4
Indifference point function ln k3.44.75.12.12.12.3
Indifference point function log k3.44.75.12.12.12.3
Delay discounting total patch changes 0 sec0.00.00.0-0.1-0.1-0.1
Delay discounting total patch changes 12 sec2.93.94.0-2.0-2.0-2.0
Delay discounting total patch changes 18 sec0.91.21.6-1.0-1.0-1.2
Delay discounting total patch changes 24 sec0.20.30.4-0.5-0.5-0.6
Delay discounting total patch changes 6 sec2.84.34.8-2.0-2.0-2.2
Delay discounting time to switch 0 sec0.50.80.9-0.9-0.9-0.8
Delay discounting water rate 0 sec1.52.32.51.61.61.4
Delay discounting water rate 12 sec0.40.50.60.80.80.7
Delay discounting water rate 18 sec0.40.50.60.80.80.6
Delay discounting water rate 24 sec0.60.80.90.90.90.9
Delay discounting water rate 6 sec0.20.20.20.50.50.4
Locomotor activity0.00.00.00.10.10.2
Locomotor testing distance0.00.00.00.20.20.2
Locomotor testing rearing0.20.30.30.60.60.6
Light reinforcement 10.10.20.3-0.4-0.4-0.5
Light reinforcement 22.43.23.6-1.7-1.7-1.9
Reaction time number correct0.91.31.41.21.21.0
Reaction time mean minus median0.30.40.60.50.50.8
Reaction time mean minus median AUC0.40.50.80.60.60.9
Reaction time num false alarms0.00.00.00.20.2-0.1
Reaction time num false alarms AUC0.10.10.20.40.40.1
Reaction time trials correct on left0.91.31.41.21.21.0
Reaction time trials on left0.91.31.41.21.21.0
Reaction time mean0.20.20.3-0.5-0.5-0.4
Reaction time mean AUC0.40.50.6-0.7-0.7-0.5
Median of all reaction times0.30.40.4-0.6-0.6-0.5
Reaction time omissions1.52.02.31.41.41.5
Reaction time false alarm rate0.00.10.1-0.2-0.2-0.4
Reaction time premature initiation rate0.10.10.1-0.4-0.4-0.2
Reaction time premature initiations0.10.10.10.30.30.4
Std. dev. reaction times0.20.20.40.30.30.6
Reaction time trials completed0.91.31.41.21.21.0
Reaction time trials AUC0.81.11.21.11.11.0
Social response proportion0.70.81.00.80.81.0
Social responses1.11.41.51.21.21.1
Social time0.00.00.0-0.2-0.2-0.2
Conditioned locomotion2.12.52.61.61.61.6
Cocaine response after cond. corrected0.10.10.2-0.3-0.3-0.4
Cocaine response after cond. not corrected0.30.30.4-0.5-0.5-0.6
Cocaine response before conditioning1.01.21.3-1.1-1.1-1.0
Saline control response2.02.72.7-1.6-1.6-1.6
Condit. Reinf. active minus inactive responses2.32.82.91.71.71.7
Condit. Reinf. active-inactive response ratio1.21.31.41.11.11.2
Condit. Reinf. active responses1.72.42.71.51.51.6
Condit. Reinf. inactive responses0.10.20.30.40.40.5
Condit. Reinf. lever presses0.10.10.1-0.3-0.3-0.2
Condit. Reinf. lever reinforcers received0.81.21.41.01.01.2
Pavlov. Cond. lever latency0.60.80.90.90.90.9
Pavlov. Cond. magazine entry latency0.30.40.4-0.6-0.6-0.6
Pavlov. Cond. change in total contacts0.00.00.0-0.2-0.2-0.1
Pavlov. Cond. index score0.81.01.1-1.0-1.0-1.0
Pavlov. Cond. latency score0.81.11.1-1.1-1.1-1.0
Pavlov. Cond. lever contacts0.30.40.5-0.7-0.7-0.6
Pavlov. Cond. magazine entry number2.22.72.71.71.71.6
Pavlov. Cond. intertrial magazine entries0.60.70.70.90.90.8
Pavlov. Cond. lever-magazine prob. diff.0.81.11.1-1.1-1.1-1.0
Pavlov. Cond. response bias0.60.90.9-1.0-1.0-0.9
Conditioned reinforcement - actives0.30.30.5-0.5-0.5-0.7
Conditioned reinforcement - inactives0.10.10.2-0.3-0.3-0.4
Conditioned locomotion1.01.21.6-1.0-1.0-1.3
Intermittent access intake day 1-15 change2.02.02.21.51.51.3
Intermittent access intake escalation2.22.22.51.61.61.3
Intermittent access intake escalation 21.31.31.51.21.21.0
Intermitt. access day 1 inactive lever presses0.10.10.10.20.20.3
Intermitt. access day 15 inactive lever presses0.00.00.0-0.0-0.00.1
Intermitt. access escalation Index2.42.22.21.51.51.5
Intermittent access day 1 total infusions0.20.20.20.50.50.3
Intermittent access day 15 total infusions2.62.93.21.81.81.5
Intermittent access terminal intake (last 3 days)1.11.21.41.21.20.9
Intermittent access total infusions0.91.01.11.11.10.8
Intermittent access day 1 locomotion0.40.50.50.70.70.6
Intermittent access day 15 total locomotion0.80.81.2-0.8-0.8-1.1
Intermittent access total locomotion0.40.40.7-0.6-0.6-0.8
Intermittent access standard deviation1.51.62.01.41.41.0
Cocaine induced anxiety0.00.00.00.10.10.2
Post-drug Anxiety0.00.10.1-0.2-0.2-0.2
Baseline Anxiety0.00.00.0-0.0-0.0-0.2
Lifetime Intake0.40.40.50.70.70.5
Incentive Sensitization - Responses0.20.20.30.50.50.2
Incentive Sensitization - Breakpoint0.10.10.20.40.40.2
Progressive ratio test 1 active lever presses0.00.00.10.30.30.1
Progressive ratio test 1 breakpoint0.10.10.10.30.30.1
Progressive ratio test 1 inactive lever presses3.33.63.82.02.01.8
Progressive ratio test 2 active lever presses0.10.10.10.30.3-0.1
Progressive ratio test 2 breakpoint0.10.10.10.30.3-0.1
Progressive ratio test 2 inactive lever presses0.00.00.00.20.2-0.1
Total sessions with >9 infusions0.10.10.3-0.3-0.3-0.5
Short access day 1 total inactive lever presses2.52.72.81.71.71.6
Short access day 10 total inactive lever presses0.10.10.10.30.30.3
Short access day 1 total infusions0.30.40.4-0.6-0.6-0.7
Short access day 10 total infusions0.00.00.0-0.1-0.1-0.2
Short access total infusions0.00.00.00.10.1-0.1
Short access day 1 locomotion0.00.00.00.10.1-0.1
Short access day 10 total locomotion0.10.10.1-0.3-0.3-0.3
Short access total locomotion0.00.00.1-0.1-0.1-0.3
Compulsive drug intake5.55.55.62.42.42.3
One hour access (0.3 mA shock)0.80.91.11.01.00.7
One hour access (shock baseline)0.10.10.20.40.40.2
Number of responses in last shaping day0.00.00.00.10.1-0.0
Context. condit. distance diff. score0.30.40.40.60.60.6
Locomotion velocity, session 15.96.47.0-2.5-2.5-2.6
Locomotion distance, session 11.82.42.6-1.5-1.5-1.6
Locomotion velocity, session 21.11.31.4-1.2-1.2-1.0
Locomotion distance, session 21.01.41.6-1.1-1.1-1.3
Locomotion velocity, session 30.00.00.0-0.2-0.2-0.2
Locomotion distance, session 30.10.10.20.30.30.4
Stereotopy head waving bouts, day 30.20.30.3-0.5-0.5-0.5
Stereotopy head waving duration, day 30.30.40.4-0.6-0.6-0.7
Locomotion velocity, session 70.60.70.70.90.90.8
Locomotion distance, session 70.81.01.11.01.00.9
Stereotopy head waving bouts, day 71.92.22.4-1.4-1.4-1.6
Stereotopy head waving duration, day 70.40.50.5-0.7-0.7-0.7
Locomotion velocity, session 80.00.00.1-0.2-0.2-0.2
Locomotion distance, session 80.00.00.1-0.2-0.2-0.3
Degree of sensitization distance0.10.10.1-0.2-0.2-0.3
Degree of sensitization stereotypy1.51.71.9-1.3-1.3-1.4
Condit. Reinf. active minus inactive responses0.50.60.8-0.7-0.7-0.9
Condit. Reinf. active-inactive response ratio0.10.10.2-0.2-0.2-0.4
Condit. Reinf. active responses0.40.50.6-0.6-0.6-0.8
Condit. Reinf. inactive responses0.50.60.7-0.8-0.8-0.8
Incentive salience index mean0.30.40.5-0.5-0.5-0.7
Condit. Reinf. lever presses0.20.30.3-0.5-0.5-0.6
Time in familiar zone, hab. session 10.20.20.30.50.50.3
Time in novel zone, hab. session 10.50.50.7-0.6-0.6-0.8
Total zone transitions, hab. session 10.20.30.5-0.4-0.4-0.7
Total locomotion distance, hab. session 12.13.03.4-1.7-1.7-1.8
Locomotion velocity, hab. session 13.14.55.0-2.1-2.1-2.2
Time in familiar zone, hab. session 20.90.91.01.01.00.9
Time in novel zone, hab. session 21.11.11.2-1.0-1.0-1.1
Total zone transitions, hab. session 20.20.20.4-0.4-0.4-0.6
Total locomotion distance, hab. session 20.40.50.6-0.7-0.7-0.8
Locomotion velocity, hab. session 20.60.80.9-0.9-0.9-1.0
Novel to familiar place preference ratio0.30.30.4-0.6-0.6-0.5
Novelty place preference0.30.30.4-0.6-0.6-0.5
Time in novel zone, NPP test0.40.40.5-0.7-0.7-0.6
Total zone transitions, NPP test0.50.70.8-0.8-0.8-0.9
Total locomotion distance, NPP test2.94.04.2-2.0-2.0-2.0
Locomotion velocity, NPP test1.92.73.0-1.6-1.6-1.7
Pavlov. Cond. lever latency0.00.00.10.10.10.3
Pavlov. Cond. magazine entry latency0.40.50.6-0.7-0.7-0.8
Pavlov. Cond. change in total contacts0.00.00.00.10.1-0.1
Pavlov. Cond. index score0.50.70.8-0.8-0.8-0.9
Pavlov. Cond. latency score0.20.30.3-0.5-0.5-0.6
Pavlov. Cond. lever contacts0.30.30.4-0.5-0.5-0.7
Pavlov. Cond. magazine entry number0.00.00.00.10.10.2
Pavlov. Cond. intertrial magazine entries0.30.30.4-0.5-0.5-0.6
Pavlov. Cond. lever-magazine prob. diff.0.60.80.9-0.8-0.8-0.9
Pavlov. Cond. response bias0.20.30.4-0.5-0.5-0.6
Bone: apparent density0.50.90.90.90.90.9
Bone surface1.52.72.71.71.71.6
Bone volume1.72.92.91.71.71.7
Bone: connectivity density1.82.82.81.71.71.7
Bone: cortical apparent density2.53.33.3-1.8-1.8-1.8
Bone: cortical area1.42.22.21.51.51.4
Bone: cortical porosity0.40.40.5-0.6-0.6-0.7
Bone: cortical porosity0.10.10.2-0.3-0.3-0.4
Bone: cortical thickness0.30.60.6-0.8-0.8-0.8
Bone: cortical thickness2.12.52.5-1.6-1.6-1.6
Bone: cortical tissue density2.53.23.2-1.8-1.8-1.8
Bone: elastic displacement0.10.10.10.40.40.3
Bone: elastic work0.40.50.50.70.70.7
Bone: endosteal estimation3.47.47.52.72.72.7
Bone: endosteal perimeter3.67.37.42.72.72.7
Bone: final force0.00.00.00.20.20.2
Bone: final moment0.10.20.20.40.40.4
Bone: marrow area3.57.47.62.82.82.7
Bone: maximum diameter4.48.08.12.82.82.8
Bone: maximum force0.10.20.20.50.50.4
Bone: maximum moment0.20.40.50.70.70.6
Bone: minimum diameter8.916.416.64.14.14.0
Bone: periosteal estimation2.55.15.22.32.32.2
Bone: periosteal perimeter3.35.55.52.42.42.3
Bone: post-yield work0.40.50.50.70.70.7
Bone: stiffness0.10.20.20.40.40.4
Bone: tissue strength0.20.20.20.50.50.4
Bone: trabecular number0.71.11.21.11.11.1
Bone: trabecular spacing0.10.10.1-0.3-0.3-0.3
Bone: trabecular thickness1.31.61.61.31.31.3
Bone: trabecular tissue density0.71.01.01.01.01.0
Breakpoint value in progressive ratio session0.40.50.5-0.7-0.7-0.7
Distance traveled before self-admin0.10.10.1-0.3-0.3-0.4
Distance traveled after self-admin0.10.10.20.40.40.4
Delta time in closed arm before/after self-admin0.10.10.10.30.30.1
Delta time in open arm before/after self-admin1.41.31.31.11.11.1
Diff in mean of infusions in LGA sessions1.01.11.21.11.10.9
Extinction: sum of active levers before priming1.01.01.11.01.00.9
Active lever presses in extinction session 60.40.40.50.60.60.7
Delta distance traveled before/after self-admin2.12.22.61.41.41.6
Delta ambulatory time before/after self-admin3.03.33.81.71.72.0
Time in closed arm before self-admin0.10.10.1-0.4-0.4-0.2
Time in closed arm after self-admin1.01.01.2-0.9-0.9-1.1
Time in open arm before self-admin0.00.00.10.20.20.1
Time in open arm after self-admin1.71.91.91.41.41.4
Sum of active levers in priming session hrs 5-60.00.00.0-0.1-0.1-0.0
Time to tail flick, vehicle, before self-admin0.50.50.5-0.7-0.7-0.7
Time to tail flick, vehicle, after self-admin0.10.20.30.30.30.5
Time to tail flick, test, before self-admin1.01.01.01.01.00.9
Time to tail flick, test, after self-admin0.30.30.50.50.50.7
Delta time to tail flick, vehicle, before/after SA0.10.10.30.20.20.5
Delta time to tail flick, test, before/after SA0.10.10.1-0.3-0.3-0.2
Ambulatory time before self-admin0.30.30.3-0.5-0.5-0.6
Ambulatory time after self-admin0.10.10.10.40.40.3
Total heroin consumption0.10.10.10.30.30.2
Area under the delay curve1.21.31.9-1.0-1.0-1.4
Delay disc. indifference point, 0s delay0.60.70.80.90.90.7
Delay disc. indifference point, 16s delay0.90.91.5-0.8-0.8-1.2
Delay disc. indifference point, 2s delay0.00.00.1-0.0-0.0-0.3
Delay disc. indifference point, 24s delay4.74.65.4-2.0-2.0-2.3
Delay disc. indifference point, 4s delay0.70.81.1-0.8-0.8-1.0
Delay disc. indifference point, 8s delay3.83.94.7-1.9-1.9-2.2
Delay discount exponential model param1.41.52.11.11.11.4
Delay discount hyperbolic model param0.90.91.40.80.81.2
Fecal boli incidents, locomotor time 10.10.10.2-0.2-0.2-0.5
Change in fecal boli incidents, locomotor task0.10.10.1-0.4-0.4-0.2
Time >=10cm from walls, locomotor time 10.70.70.9-1.0-1.0-0.5
Bouts of movement, locomotor time 12.02.22.3-1.5-1.5-1.4
Total resting periods, locomotor time 13.33.74.0-2.0-2.0-1.8
Rest time, locomotor task time 10.91.01.0-1.0-1.0-1.0
Distance moved, locomotor task time 11.41.61.71.31.31.1
Vertical activity count, locomotor time 10.30.30.30.60.60.4
Time >=10cm from walls, locomotor time 20.40.40.5-0.7-0.7-0.6
Bouts of movement, locomotor time 25.45.86.2-2.5-2.5-2.3
Total resting periods, locomotor time 26.06.46.7-2.6-2.6-2.4
Rest time, locomotor task time 22.02.32.3-1.5-1.5-1.5
Distance moved, locomotor task time 21.72.02.11.51.51.3
Vertical activity count, locomotor time 20.30.40.50.70.70.3
Weight adjusted by age0.20.20.30.50.50.5
Seeking ratio, delayed vs. immediate footshock0.00.00.0-0.1-0.1-0.1
Locomotion in novel chamber2.02.42.71.51.51.6
Locomotion in novel chamber post-restriction0.10.10.1-0.3-0.3-0.3
Progressive ratio1.01.11.31.01.01.1
Food seeking constrained by brief footshock0.10.10.2-0.3-0.3-0.4
Seeking ratio, punishment vs. effort1.21.51.7-1.2-1.2-1.3
Run reversals in cocaine runway, females1.41.41.4-1.2-1.2-1.1
Run reversals in cocaine runway, males2.22.12.2-1.5-1.5-1.5
Latency to leave start box in cocaine runway4.34.74.92.22.22.1
Latency to leave start box in cocaine runway, F4.95.45.62.42.42.2
Latency to leave start box in cocaine runway, M0.50.50.60.80.80.6
Cd content in liver0.40.50.6-0.7-0.7-0.8
Co content in liver0.30.30.30.60.60.5
Cu content in liver7.38.89.5-2.9-2.9-3.1
Fe content in liver1.51.81.8-1.3-1.3-1.3
K content in liver0.60.60.7-0.8-0.8-0.8
Mg content in liver1.01.11.2-1.0-1.0-1.1
Mn content in liver8.09.29.2-3.0-3.0-3.0
Na content in liver1.51.61.7-1.3-1.3-1.3
Rb content in liver0.30.30.4-0.5-0.5-0.6
Se content in liver22.226.927.0-5.2-5.2-5.2
Sr content in liver0.10.10.1-0.3-0.3-0.3
Zn content in liver1.01.11.2-1.0-1.0-1.1