ENSRNOG00000067247

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000067247 0.02 0.02 7.4e-03 0.02 0.01 0.01 0.01 4.8e-03 1.9e-02 1.6e-02 1.0e-02
2 LHb gene expression ENSRNOG00000067247 0.46 0.17 6.9e-04 0.12 0.12 0.12 0.12 1.0e-03 1.2e-03 8.3e-04 9.2e-04
3 NAcc gene expression ENSRNOG00000067247 0.09 0.04 9.6e-09 0.13 0.12 0.11 0.12 5.2e-10 4.6e-09 2.3e-08 5.3e-09
4 PL gene expression ENSRNOG00000067247 0.1 0.05 3.3e-06 0.07 0.07 0.06 0.07 4.0e-06 3.7e-06 1.6e-05 3.8e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail1.75.67.51.22.72.72.5
BMI without tail0.30.71.9-1.4-0.5-0.50.4
Body weight4.719.852.30.34.81.87.2
Epididymis fat weight3.17.110.21.82.63.22.9
Glucose0.71.01.21.00.91.11.1
Heart weight0.91.34.2-0.9-0.5-2.10.2
Left kidney weight2.46.820.70.12.50.64.6
Right kidney weight4.713.534.91.03.82.05.9
Tail length1.75.18.6-2.9-0.9-2.71.9
Length with tail2.910.532.6-1.62.2-1.35.7
Length without tail6.514.133.21.44.21.85.8
Liver weight, left2.43.98.6-0.32.50.92.9
Liver weight, right2.44.010.8-1.11.90.83.3
Parametrial fat weight0.51.02.30.80.90.21.5
Retroperitoneal fat weight2.16.912.01.42.23.53.0
Intraocular pressure0.30.40.9-0.50.90.20.7
Extensor digitorum longus weight1.14.310.5-0.82.11.33.2
Soleus weight0.82.35.4-1.11.30.92.3
Tibialis anterior weight1.13.79.1-1.22.00.43.0
Tibia length0.82.36.3-0.91.4-0.12.5
Number of licking bursts0.40.41.5-0.10.40.11.2
Food consumed during 24 hour testing period1.41.73.2-0.7-1.8-1.0-1.4
Times rat made contact with spout0.70.82.3-0.8-0.5-1.5-0.2
Mean time between licks in bursts0.30.40.7-0.80.1-0.8-0.4
Mean num. licks in bursts0.91.11.9-0.5-0.6-1.3-1.4
Std. dev. time between licks in bursts0.00.00.10.1-0.4-0.20.0
Water consumed over 24 hours0.50.61.3-0.6-0.8-1.10.2
Indifference point 0 sec0.61.01.60.71.30.61.2
Indifference point AUC0.20.20.50.10.10.70.5
Indifference point function ln k0.40.51.00.10.7-1.00.7
Indifference point function log k0.40.51.00.10.7-1.00.7
Delay discounting total patch changes 0 sec0.40.71.30.41.10.41.1
Delay discounting total patch changes 12 sec1.31.72.41.21.31.51.2
Delay discounting total patch changes 18 sec0.40.61.00.61.00.90.2
Delay discounting total patch changes 24 sec0.10.10.30.30.20.50.2
Delay discounting total patch changes 6 sec0.00.00.2-0.4-0.1-0.10.2
Delay discounting time to switch 0 sec0.40.61.00.1-1.00.6-1.0
Delay discounting water rate 0 sec0.71.22.8-0.11.7-0.21.4
Delay discounting water rate 12 sec0.50.71.4-0.60.9-0.61.2
Delay discounting water rate 18 sec0.91.22.1-1.3-0.9-1.4-0.5
Delay discounting water rate 24 sec0.71.02.9-0.90.4-1.70.2
Delay discounting water rate 6 sec0.81.23.1-0.21.70.21.3
Locomotor activity0.71.12.5-1.10.90.01.6
Locomotor testing distance0.50.92.10.11.40.61.1
Locomotor testing rearing0.10.10.4-0.70.40.0-0.1
Light reinforcement 10.30.50.80.4-0.90.5-0.8
Light reinforcement 21.21.62.71.70.81.60.5
Reaction time number correct0.30.40.70.50.5-0.50.8
Reaction time mean minus median6.58.513.6-3.7-2.9-2.8-2.0
Reaction time mean minus median AUC6.98.811.9-3.4-3.0-3.0-2.3
Reaction time num false alarms0.10.10.20.4-0.50.00.1
Reaction time num false alarms AUC0.10.20.20.5-0.10.40.4
Reaction time trials correct on left0.30.40.70.50.5-0.50.8
Reaction time trials on left0.20.30.60.40.5-0.60.8
Reaction time mean2.53.47.6-1.2-2.2-0.2-2.8
Reaction time mean AUC2.33.16.8-1.3-1.9-0.1-2.6
Median of all reaction times1.62.26.20.0-1.40.9-2.5
Reaction time omissions1.62.12.6-1.5-1.4-1.2-1.6
Reaction time false alarm rate0.10.20.60.3-0.10.80.3
Reaction time premature initiation rate8.211.017.1-1.9-4.1-3.3-3.5
Reaction time premature initiations6.38.912.4-1.9-3.5-3.5-2.8
Std. dev. reaction times4.66.38.9-3.0-2.8-1.9-2.2
Reaction time trials completed0.20.30.60.40.5-0.60.8
Reaction time trials AUC0.30.40.60.60.5-0.40.8
Social response proportion1.81.94.5-2.10.3-1.70.5
Social responses3.84.99.6-3.1-1.3-2.8-0.5
Social time0.20.30.5-0.7-0.6-0.1-0.4
Conditioned locomotion0.20.30.8-0.30.0-0.5-0.9
Cocaine response after cond. corrected1.11.22.11.3-0.71.4-0.8
Cocaine response after cond. not corrected1.21.42.71.4-0.81.6-0.6
Cocaine response before conditioning0.20.20.4-0.6-0.20.00.6
Saline control response3.24.28.9-2.6-1.1-3.0-0.4
Condit. Reinf. active minus inactive responses1.31.63.8-1.1-0.9-1.9-0.7
Condit. Reinf. active-inactive response ratio1.51.62.6-1.1-1.3-1.6-0.8
Condit. Reinf. active responses0.91.33.4-0.9-0.8-1.9-0.3
Condit. Reinf. inactive responses0.10.20.6-0.1-0.1-0.70.2
Condit. Reinf. lever presses0.00.10.1-0.1-0.4-0.20.3
Condit. Reinf. lever reinforcers received0.81.23.3-0.9-0.8-1.8-0.2
Pavlov. Cond. lever latency0.20.30.60.70.80.20.5
Pavlov. Cond. magazine entry latency0.10.10.2-0.50.00.30.3
Pavlov. Cond. change in total contacts0.10.20.6-0.80.0-0.30.3
Pavlov. Cond. index score0.20.20.5-0.7-0.6-0.3-0.1
Pavlov. Cond. latency score0.10.20.4-0.6-0.4-0.3-0.1
Pavlov. Cond. lever contacts0.30.40.9-0.0-0.90.2-0.8
Pavlov. Cond. magazine entry number0.00.00.10.20.0-0.2-0.1
Pavlov. Cond. intertrial magazine entries1.21.53.6-0.3-1.2-1.9-1.0
Pavlov. Cond. lever-magazine prob. diff.0.20.20.6-0.8-0.5-0.2-0.0
Pavlov. Cond. response bias0.40.61.3-0.3-1.20.1-0.9
Conditioned reinforcement - actives1.41.44.20.11.20.32.0
Conditioned reinforcement - inactives0.70.81.11.10.70.71.0
Conditioned locomotion0.20.20.5-0.3-0.1-0.50.7
Intermittent access intake day 1-15 change0.60.61.2-1.00.5-1.10.0
Intermittent access intake escalation0.60.61.1-1.00.5-1.00.1
Intermittent access intake escalation 20.50.50.7-0.80.8-0.7-0.3
Intermitt. access day 1 inactive lever presses0.10.20.20.30.40.50.4
Intermitt. access day 15 inactive lever presses0.30.30.70.2-0.90.7-0.1
Intermitt. access escalation Index0.00.00.1-0.20.10.2-0.1
Intermittent access day 1 total infusions0.80.91.9-0.8-1.4-0.8-0.8
Intermittent access day 15 total infusions1.51.72.9-1.5-1.0-1.7-0.7
Intermittent access terminal intake (last 3 days)0.91.01.5-0.9-0.9-1.2-0.8
Intermittent access total infusions1.92.13.5-1.0-1.9-1.5-1.3
Intermittent access day 1 locomotion0.90.91.5-0.3-1.2-0.9-1.1
Intermittent access day 15 total locomotion3.33.54.8-1.5-2.2-2.0-1.6
Intermittent access total locomotion2.63.05.9-0.7-2.4-1.5-1.8
Intermittent access standard deviation0.30.30.7-0.80.6-0.00.6
Cocaine induced anxiety0.30.31.01.0-0.3-0.0-0.3
Post-drug Anxiety1.71.93.60.1-1.9-0.9-1.7
Baseline Anxiety0.30.30.7-0.1-0.90.3-0.7
Lifetime Intake0.91.01.9-0.4-1.4-1.0-0.9
Incentive Sensitization - Responses0.60.62.2-0.3-0.5-1.5-0.1
Incentive Sensitization - Breakpoint0.70.72.3-0.3-0.6-1.5-0.2
Progressive ratio test 1 active lever presses0.20.20.3-0.3-0.4-0.50.5
Progressive ratio test 1 breakpoint0.30.30.5-0.4-0.6-0.70.2
Progressive ratio test 1 inactive lever presses0.40.41.2-0.40.3-0.31.1
Progressive ratio test 2 active lever presses0.80.82.5-0.5-0.6-1.60.1
Progressive ratio test 2 breakpoint0.91.02.9-0.7-0.8-1.7-0.1
Progressive ratio test 2 inactive lever presses0.40.51.5-0.3-0.4-1.20.6
Total sessions with >9 infusions0.60.71.1-0.80.5-0.81.0
Short access day 1 total inactive lever presses1.01.12.3-0.90.5-1.01.5
Short access day 10 total inactive lever presses0.70.81.2-0.7-1.0-1.1-0.7
Short access day 1 total infusions0.40.40.70.50.70.50.9
Short access day 10 total infusions0.30.30.6-0.4-0.7-0.80.0
Short access total infusions0.10.10.10.3-0.3-0.20.1
Short access day 1 locomotion0.10.10.10.40.20.20.3
Short access day 10 total locomotion0.40.50.90.30.80.40.9
Short access total locomotion0.30.30.6-0.4-0.4-0.8-0.3
Compulsive drug intake0.30.30.9-0.4-0.2-0.0-0.9
One hour access (0.3 mA shock)1.11.31.8-0.7-1.3-1.3-1.1
One hour access (shock baseline)0.60.71.4-0.3-1.2-1.0-0.4
Number of responses in last shaping day0.30.30.5-0.60.70.50.3
Context. condit. distance diff. score1.41.73.2-1.11.40.51.8
Locomotion velocity, session 10.20.20.4-0.7-0.2-0.70.1
Locomotion distance, session 10.20.30.50.3-0.7-0.0-0.7
Locomotion velocity, session 20.10.10.30.20.00.20.6
Locomotion distance, session 20.60.81.4-0.9-1.0-1.2-0.3
Locomotion velocity, session 30.30.40.80.20.70.30.9
Locomotion distance, session 30.30.40.7-0.2-0.7-0.8-0.4
Stereotopy head waving bouts, day 31.41.73.0-1.71.2-0.91.3
Stereotopy head waving duration, day 30.70.82.0-1.40.9-0.40.6
Locomotion velocity, session 70.80.92.8-1.7-0.7-0.3-0.5
Locomotion distance, session 71.41.83.9-2.0-1.2-0.9-1.1
Stereotopy head waving bouts, day 72.73.14.2-1.6-2.0-2.0-1.3
Stereotopy head waving duration, day 70.60.81.6-0.5-1.0-1.3-0.5
Locomotion velocity, session 80.50.61.4-0.8-0.6-1.2-0.2
Locomotion distance, session 80.71.11.8-1.30.8-0.41.3
Degree of sensitization distance0.70.71.7-1.3-0.6-0.2-0.8
Degree of sensitization stereotypy0.70.81.8-0.2-1.3-0.8-0.8
Condit. Reinf. active minus inactive responses1.31.43.00.81.70.81.2
Condit. Reinf. active-inactive response ratio1.21.33.30.81.80.90.4
Condit. Reinf. active responses0.60.71.00.71.00.90.8
Condit. Reinf. inactive responses0.20.20.6-0.0-0.80.3-0.1
Incentive salience index mean0.30.30.50.40.40.70.7
Condit. Reinf. lever presses0.40.51.20.2-0.81.1-0.0
Time in familiar zone, hab. session 10.50.50.80.90.50.90.3
Time in novel zone, hab. session 10.30.30.4-0.70.5-0.10.6
Total zone transitions, hab. session 14.15.89.0-2.7-2.4-3.0-1.0
Total locomotion distance, hab. session 12.23.15.6-2.4-1.5-1.9-1.0
Locomotion velocity, hab. session 12.53.64.4-2.1-1.9-1.9-1.6
Time in familiar zone, hab. session 20.91.02.2-0.41.51.10.7
Time in novel zone, hab. session 20.40.40.80.4-0.9-0.7-0.6
Total zone transitions, hab. session 20.60.81.7-0.5-1.3-1.0-0.5
Total locomotion distance, hab. session 20.91.21.8-0.6-1.4-1.0-1.2
Locomotion velocity, hab. session 20.91.22.0-0.4-1.4-1.0-1.3
Novel to familiar place preference ratio0.10.10.20.4-0.1-0.1-0.2
Novelty place preference0.10.10.30.60.1-0.0-0.1
Time in novel zone, NPP test0.10.10.30.60.2-0.10.1
Total zone transitions, NPP test0.50.71.2-1.1-0.5-1.10.4
Total locomotion distance, NPP test1.11.62.6-1.4-1.6-1.0-0.8
Locomotion velocity, NPP test1.72.43.4-1.8-1.8-1.4-0.9
Pavlov. Cond. lever latency3.24.18.21.92.90.72.0
Pavlov. Cond. magazine entry latency2.93.74.9-2.2-2.2-2.0-1.1
Pavlov. Cond. change in total contacts1.21.32.5-1.6-1.60.1-0.5
Pavlov. Cond. index score2.73.56.4-2.1-2.5-1.2-1.3
Pavlov. Cond. latency score3.03.87.3-2.0-2.7-1.2-1.6
Pavlov. Cond. lever contacts3.33.98.6-1.7-2.9-0.5-2.0
Pavlov. Cond. magazine entry number3.64.57.72.82.22.20.8
Pavlov. Cond. intertrial magazine entries0.70.82.21.50.70.6-0.1
Pavlov. Cond. lever-magazine prob. diff.2.12.65.1-1.8-2.3-0.8-1.1
Pavlov. Cond. response bias2.63.25.1-2.2-2.3-1.3-1.1
Bone: apparent density5.69.212.71.63.63.03.6
Bone surface3.96.812.30.53.02.43.5
Bone volume5.59.412.61.33.43.43.6
Bone: connectivity density2.84.49.2-0.12.61.33.0
Bone: cortical apparent density0.91.22.61.61.20.8-0.0
Bone: cortical area2.53.87.8-0.21.91.92.8
Bone: cortical porosity0.50.51.0-0.8-1.0-0.5-0.5
Bone: cortical porosity0.90.91.4-1.2-1.1-0.9-0.7
Bone: cortical thickness1.83.04.80.32.01.72.2
Bone: cortical thickness1.21.41.9-1.1-1.0-1.3-1.4
Bone: cortical tissue density0.91.22.81.71.20.8-0.2
Bone: elastic displacement0.10.10.30.30.1-0.4-0.5
Bone: elastic work0.30.30.60.10.7-0.50.8
Bone: endosteal estimation0.30.71.2-0.90.4-0.81.1
Bone: endosteal perimeter0.71.44.3-0.70.90.22.1
Bone: final force0.20.30.8-0.50.30.50.9
Bone: final moment0.20.40.8-0.30.40.60.9
Bone: marrow area0.30.61.0-0.90.3-0.81.0
Bone: maximum diameter1.83.48.1-0.51.91.22.8
Bone: maximum force0.40.71.9-0.70.40.61.4
Bone: maximum moment0.40.71.9-0.50.50.61.4
Bone: minimum diameter0.20.40.9-0.90.10.30.7
Bone: periosteal estimation0.91.95.1-0.81.30.62.3
Bone: periosteal perimeter1.52.56.3-0.71.51.02.5
Bone: post-yield work0.40.51.30.20.61.20.6
Bone: stiffness0.20.30.5-0.7-0.60.10.6
Bone: tissue strength1.21.12.01.01.40.71.1
Bone: trabecular number2.84.47.80.32.61.72.8
Bone: trabecular spacing0.40.61.10.4-1.0-0.1-1.0
Bone: trabecular thickness5.06.07.31.52.72.62.7
Bone: trabecular tissue density0.10.20.30.5-0.20.20.5
Breakpoint value in progressive ratio session0.80.81.4-1.2-1.0-1.00.1
Distance traveled before self-admin0.70.71.31.10.71.00.1
Distance traveled after self-admin0.10.10.40.00.10.6-0.2
Delta time in closed arm before/after self-admin0.40.41.0-0.10.70.31.0
Delta time in open arm before/after self-admin3.23.07.00.1-2.2-0.5-2.7
Diff in mean of infusions in LGA sessions0.40.40.5-0.7-0.7-0.5-0.6
Extinction: sum of active levers before priming1.31.32.31.40.51.50.8
Active lever presses in extinction session 61.61.52.50.71.50.91.6
Delta distance traveled before/after self-admin0.90.92.1-1.5-0.7-0.8-0.6
Delta ambulatory time before/after self-admin0.40.51.4-1.2-0.5-0.2-0.5
Time in closed arm before self-admin0.30.30.5-0.30.7-0.50.7
Time in closed arm after self-admin1.51.63.0-0.91.5-0.51.7
Time in open arm before self-admin0.60.61.4-0.11.10.21.2
Time in open arm after self-admin0.70.81.60.3-1.10.2-1.3
Sum of active levers in priming session hrs 5-60.10.10.3-0.30.00.00.5
Time to tail flick, vehicle, before self-admin0.10.10.2-0.40.10.5-0.4
Time to tail flick, vehicle, after self-admin0.20.20.4-0.2-0.5-0.60.1
Time to tail flick, test, before self-admin0.50.51.7-0.30.30.01.3
Time to tail flick, test, after self-admin0.10.10.20.4-0.3-0.2-0.4
Delta time to tail flick, vehicle, before/after SA0.40.41.31.1-0.40.0-0.1
Delta time to tail flick, test, before/after SA0.70.61.50.2-0.8-0.4-1.2
Ambulatory time before self-admin0.30.30.70.80.30.80.0
Ambulatory time after self-admin0.20.20.6-0.20.10.8-0.1
Total heroin consumption0.60.71.8-0.2-1.30.3-0.9
Area under the delay curve1.21.22.8-1.0-1.7-0.3-1.0
Delay disc. indifference point, 0s delay0.00.10.1-0.30.00.20.2
Delay disc. indifference point, 16s delay0.10.20.4-0.1-0.40.6-0.2
Delay disc. indifference point, 2s delay2.52.85.8-1.2-2.4-1.2-1.7
Delay disc. indifference point, 24s delay0.30.30.5-0.7-0.60.3-0.2
Delay disc. indifference point, 4s delay0.40.41.0-0.0-1.00.5-0.6
Delay disc. indifference point, 8s delay1.01.11.9-0.6-1.4-0.6-1.3
Delay discount exponential model param1.41.43.31.01.80.31.2
Delay discount hyperbolic model param1.51.63.61.01.90.41.2
Fecal boli incidents, locomotor time 11.41.52.8-0.31.70.51.7
Change in fecal boli incidents, locomotor task1.11.02.00.5-1.3-0.6-1.4
Time >=10cm from walls, locomotor time 10.50.51.41.2-0.6-0.1-0.6
Bouts of movement, locomotor time 10.20.20.6-0.10.80.20.5
Total resting periods, locomotor time 10.10.20.30.30.50.40.3
Rest time, locomotor task time 10.30.40.60.5-0.7-0.3-0.8
Distance moved, locomotor task time 10.30.30.5-0.00.50.60.7
Vertical activity count, locomotor time 11.31.31.90.71.21.21.4
Time >=10cm from walls, locomotor time 20.10.10.4-0.20.30.10.6
Bouts of movement, locomotor time 21.71.95.0-0.31.50.42.2
Total resting periods, locomotor time 21.92.05.10.31.50.82.3
Rest time, locomotor task time 20.60.71.30.6-1.1-0.7-0.8
Distance moved, locomotor task time 20.70.81.2-0.41.10.81.1
Vertical activity count, locomotor time 23.33.65.80.82.41.72.3
Weight adjusted by age0.60.71.0-0.61.0-0.90.8
Seeking ratio, delayed vs. immediate footshock1.31.53.10.2-1.4-1.0-1.8
Locomotion in novel chamber2.73.36.3-0.9-2.0-2.5-1.5
Locomotion in novel chamber post-restriction0.70.81.7-0.8-0.8-1.30.3
Progressive ratio1.21.42.7-0.3-1.6-1.7-0.3
Food seeking constrained by brief footshock0.91.12.20.91.50.61.0
Seeking ratio, punishment vs. effort1.72.14.80.62.21.60.9
Run reversals in cocaine runway, females0.10.10.4-0.2-0.2-0.1-0.6
Run reversals in cocaine runway, males1.61.52.90.51.70.91.5
Latency to leave start box in cocaine runway0.10.10.30.00.5-0.30.2
Latency to leave start box in cocaine runway, F0.80.92.20.41.50.41.1
Latency to leave start box in cocaine runway, M1.01.01.5-0.7-1.1-0.9-1.2
Cd content in liver0.20.20.70.50.1-0.2-0.8
Co content in liver1.01.22.3-0.2-1.5-0.7-1.4
Cu content in liver2.83.46.60.12.61.72.0
Fe content in liver9.711.621.41.64.63.03.7
K content in liver0.40.41.1-0.2-1.1-0.4-0.6
Mg content in liver1.21.31.8-0.9-1.3-1.3-1.0
Mn content in liver0.20.30.6-0.70.4-0.50.3
Na content in liver0.40.41.10.5-1.1-0.5-0.3
Rb content in liver0.50.62.1-0.5-0.30.1-1.5
Se content in liver2.53.06.32.01.12.50.8
Sr content in liver0.50.51.7-0.30.10.11.3
Zn content in liver2.22.45.00.91.80.82.2