ENSRNOG00000067131

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000067131 0.07 0.05 8.8e-07 0.04 0.02 0.02 0.03 1.5e-05 4.5e-03 2.0e-03 2.9e-04
2 PL intron excision ratio chr9:54876271:54928715 0.03 0.03 3.9e-03 0.03 0.03 0.03 0.03 1.2e-03 2.8e-03 4.0e-03 2.2e-03
3 PL intron excision ratio chr9:54911589:54928715 0.03 0.03 5.1e-03 0.03 0.03 0.02 0.02 5.2e-03 5.3e-03 6.5e-03 8.4e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail4.614.916.0-3.9-4.03.7
BMI without tail0.40.91.5-1.0-1.20.4
Body weight1.04.14.91.91.9-2.2
Epididymis fat weight1.84.25.31.72.1-2.3
Glucose0.30.40.50.60.6-0.7
Heart weight0.00.10.1-0.20.4-0.0
Left kidney weight0.10.40.60.60.7-0.5
Right kidney weight0.20.60.90.60.9-0.7
Tail length12.437.439.96.06.0-6.3
Length with tail11.542.243.86.46.5-6.6
Length without tail1.12.43.11.51.8-1.4
Liver weight, left0.00.10.2-0.10.50.0
Liver weight, right0.20.30.50.20.7-0.6
Parametrial fat weight0.00.10.1-0.3-0.10.4
Retroperitoneal fat weight0.10.40.80.00.9-0.7
Intraocular pressure1.21.61.8-1.3-1.11.3
Extensor digitorum longus weight1.66.67.6-2.5-2.72.5
Soleus weight0.00.00.10.2-0.3-0.1
Tibialis anterior weight0.72.43.0-1.5-1.71.4
Tibia length5.716.117.13.84.1-4.1
Number of licking bursts0.20.30.4-0.5-0.60.5
Food consumed during 24 hour testing period0.20.20.40.40.2-0.6
Times rat made contact with spout0.50.60.90.90.5-0.9
Mean time between licks in bursts0.10.10.2-0.2-0.30.4
Mean num. licks in bursts0.40.50.70.80.6-0.7
Std. dev. time between licks in bursts1.31.51.6-1.2-1.31.3
Water consumed over 24 hours0.40.51.2-0.5-1.10.3
Indifference point 0 sec1.52.43.1-1.5-1.81.4
Indifference point AUC0.00.00.10.0-0.30.0
Indifference point function ln k1.72.42.6-1.6-1.51.6
Indifference point function log k1.72.42.6-1.6-1.51.6
Delay discounting total patch changes 0 sec1.32.12.8-1.4-1.71.3
Delay discounting total patch changes 12 sec0.00.10.2-0.0-0.4-0.0
Delay discounting total patch changes 18 sec2.73.54.3-1.7-2.11.9
Delay discounting total patch changes 24 sec0.10.20.5-0.2-0.70.1
Delay discounting total patch changes 6 sec1.72.63.8-1.6-1.91.2
Delay discounting time to switch 0 sec0.60.81.20.80.9-1.1
Delay discounting water rate 0 sec0.10.20.3-0.3-0.40.5
Delay discounting water rate 12 sec1.32.02.2-1.5-1.31.5
Delay discounting water rate 18 sec0.00.00.0-0.20.1-0.1
Delay discounting water rate 24 sec0.10.10.20.30.4-0.1
Delay discounting water rate 6 sec0.40.60.6-0.8-0.80.8
Locomotor activity0.20.30.5-0.4-0.70.4
Locomotor testing distance0.81.32.1-1.0-1.40.9
Locomotor testing rearing0.10.20.4-0.2-0.7-0.0
Light reinforcement 10.10.10.2-0.4-0.50.1
Light reinforcement 21.41.82.11.41.4-1.2
Reaction time number correct0.50.70.9-0.8-0.70.9
Reaction time mean minus median5.57.28.22.92.6-2.6
Reaction time mean minus median AUC4.05.15.72.42.3-2.0
Reaction time num false alarms1.41.92.8-1.3-1.71.0
Reaction time num false alarms AUC1.11.62.5-1.2-1.60.9
Reaction time trials correct on left0.50.70.9-0.8-0.70.9
Reaction time trials on left0.30.50.7-0.7-0.50.8
Reaction time mean9.412.914.23.63.8-3.4
Reaction time mean AUC9.612.713.83.63.7-3.4
Median of all reaction times7.910.712.43.23.5-3.1
Reaction time omissions2.63.54.01.81.8-2.0
Reaction time false alarm rate0.50.71.3-0.7-1.10.4
Reaction time premature initiation rate3.85.15.9-2.4-2.02.4
Reaction time premature initiations4.56.47.7-2.7-2.12.8
Std. dev. reaction times7.19.710.23.23.1-3.0
Reaction time trials completed0.30.50.7-0.7-0.50.8
Reaction time trials AUC0.30.50.7-0.7-0.50.8
Social response proportion2.32.53.01.41.7-1.5
Social responses0.50.71.00.61.0-0.8
Social time0.50.61.40.61.2-0.5
Conditioned locomotion3.84.54.92.02.2-2.1
Cocaine response after cond. corrected0.50.60.80.80.9-0.6
Cocaine response after cond. not corrected0.40.50.60.80.7-0.6
Cocaine response before conditioning0.30.40.6-0.5-0.80.6
Saline control response0.10.10.20.5-0.1-0.3
Condit. Reinf. active minus inactive responses2.32.93.51.61.9-1.6
Condit. Reinf. active-inactive response ratio0.60.61.10.61.0-0.6
Condit. Reinf. active responses0.50.70.80.80.9-0.9
Condit. Reinf. inactive responses0.30.40.5-0.6-0.70.6
Condit. Reinf. lever presses0.81.21.5-0.9-1.21.1
Condit. Reinf. lever reinforcers received0.40.50.70.60.8-0.7
Pavlov. Cond. lever latency1.41.92.21.21.5-1.5
Pavlov. Cond. magazine entry latency0.30.40.5-0.5-0.70.7
Pavlov. Cond. change in total contacts0.60.81.1-1.1-0.41.1
Pavlov. Cond. index score0.60.81.0-0.8-0.81.0
Pavlov. Cond. latency score0.40.40.6-0.6-0.60.8
Pavlov. Cond. lever contacts1.01.31.6-1.0-1.21.2
Pavlov. Cond. magazine entry number0.10.10.1-0.3-0.30.3
Pavlov. Cond. intertrial magazine entries0.20.30.7-0.4-0.80.3
Pavlov. Cond. lever-magazine prob. diff.0.81.01.2-0.9-0.91.1
Pavlov. Cond. response bias0.30.50.6-0.5-0.70.8
Conditioned reinforcement - actives0.60.60.80.90.7-0.7
Conditioned reinforcement - inactives0.60.70.80.90.9-0.6
Conditioned locomotion0.00.00.1-0.0-0.20.0
Intermittent access intake day 1-15 change0.10.10.2-0.4-0.20.1
Intermittent access intake escalation0.30.30.5-0.7-0.40.4
Intermittent access intake escalation 20.00.00.0-0.00.2-0.0
Intermitt. access day 1 inactive lever presses0.00.00.00.10.0-0.2
Intermitt. access day 15 inactive lever presses0.00.10.10.1-0.20.3
Intermitt. access escalation Index0.10.10.20.10.2-0.4
Intermittent access day 1 total infusions4.85.56.32.42.1-2.5
Intermittent access day 15 total infusions2.52.83.71.61.6-1.9
Intermittent access terminal intake (last 3 days)1.41.51.81.21.1-1.4
Intermittent access total infusions4.44.95.52.22.1-2.4
Intermittent access day 1 locomotion0.60.60.90.70.6-0.9
Intermittent access day 15 total locomotion0.70.71.20.80.7-1.1
Intermittent access total locomotion0.91.01.50.90.9-1.2
Intermittent access standard deviation0.20.20.20.40.4-0.4
Cocaine induced anxiety0.80.91.3-0.9-1.10.8
Post-drug Anxiety1.01.11.4-0.9-1.21.0
Baseline Anxiety0.20.20.40.50.6-0.4
Lifetime Intake3.43.84.22.01.9-2.0
Incentive Sensitization - Responses1.41.41.41.21.1-1.1
Incentive Sensitization - Breakpoint1.21.21.31.11.1-1.1
Progressive ratio test 1 active lever presses0.60.61.20.60.7-1.1
Progressive ratio test 1 breakpoint0.60.61.20.60.6-1.1
Progressive ratio test 1 inactive lever presses0.50.50.80.60.6-0.9
Progressive ratio test 2 active lever presses1.92.02.21.31.5-1.5
Progressive ratio test 2 breakpoint1.11.21.31.01.1-1.1
Progressive ratio test 2 inactive lever presses0.81.01.21.10.9-0.9
Total sessions with >9 infusions0.00.00.0-0.1-0.0-0.2
Short access day 1 total inactive lever presses0.40.40.50.70.6-0.7
Short access day 10 total inactive lever presses0.00.00.10.20.10.1
Short access day 1 total infusions0.30.30.40.50.6-0.7
Short access day 10 total infusions5.56.16.32.52.4-2.5
Short access total infusions1.11.31.41.11.1-1.2
Short access day 1 locomotion0.60.70.90.60.8-1.0
Short access day 10 total locomotion0.00.00.0-0.2-0.10.1
Short access total locomotion0.60.61.00.60.6-1.0
Compulsive drug intake0.90.91.1-0.8-1.01.0
One hour access (0.3 mA shock)2.52.93.41.81.7-1.6
One hour access (shock baseline)5.36.16.72.62.4-2.4
Number of responses in last shaping day0.10.10.1-0.2-0.20.4
Context. condit. distance diff. score1.41.71.9-1.2-1.41.3
Locomotion velocity, session 12.83.04.1-1.7-1.42.0
Locomotion distance, session 10.30.40.6-0.6-0.80.6
Locomotion velocity, session 22.73.13.6-1.7-1.71.9
Locomotion distance, session 20.00.00.00.20.10.2
Locomotion velocity, session 30.30.40.40.60.6-0.7
Locomotion distance, session 30.10.10.1-0.10.40.1
Stereotopy head waving bouts, day 30.40.40.6-0.7-0.40.8
Stereotopy head waving duration, day 30.00.00.0-0.2-0.00.1
Locomotion velocity, session 74.04.44.8-2.1-2.02.2
Locomotion distance, session 70.20.20.4-0.3-0.60.5
Stereotopy head waving bouts, day 70.10.10.3-0.50.30.2
Stereotopy head waving duration, day 70.20.30.6-0.8-0.00.5
Locomotion velocity, session 84.04.85.0-2.2-2.12.2
Locomotion distance, session 80.81.21.4-1.0-1.11.2
Degree of sensitization distance0.10.10.40.1-0.60.1
Degree of sensitization stereotypy0.20.20.4-0.70.10.3
Condit. Reinf. active minus inactive responses0.91.01.31.01.1-0.9
Condit. Reinf. active-inactive response ratio0.30.40.50.60.7-0.5
Condit. Reinf. active responses1.01.31.31.21.2-1.1
Condit. Reinf. inactive responses0.10.10.20.40.2-0.3
Incentive salience index mean0.60.70.80.80.9-0.8
Condit. Reinf. lever presses0.30.40.40.60.5-0.6
Time in familiar zone, hab. session 10.50.50.6-0.8-0.80.5
Time in novel zone, hab. session 10.80.81.70.81.3-0.3
Total zone transitions, hab. session 10.60.81.2-0.9-0.61.1
Total locomotion distance, hab. session 10.30.40.70.70.8-0.3
Locomotion velocity, hab. session 10.91.21.61.31.2-0.8
Time in familiar zone, hab. session 20.30.30.5-0.3-0.70.6
Time in novel zone, hab. session 20.70.71.10.61.1-0.7
Total zone transitions, hab. session 20.00.10.10.30.2-0.1
Total locomotion distance, hab. session 22.53.34.32.11.7-1.6
Locomotion velocity, hab. session 22.33.14.12.01.6-1.6
Novel to familiar place preference ratio8.79.110.62.93.3-2.9
Novelty place preference8.38.610.12.83.2-2.7
Time in novel zone, NPP test7.98.310.62.83.3-2.6
Total zone transitions, NPP test0.20.20.4-0.4-0.30.7
Total locomotion distance, NPP test0.40.61.00.81.0-0.4
Locomotion velocity, NPP test0.30.40.50.70.7-0.5
Pavlov. Cond. lever latency0.10.10.2-0.3-0.20.4
Pavlov. Cond. magazine entry latency0.10.10.10.40.3-0.3
Pavlov. Cond. change in total contacts0.00.00.00.0-0.2-0.1
Pavlov. Cond. index score0.30.30.40.60.5-0.6
Pavlov. Cond. latency score0.20.30.40.50.5-0.6
Pavlov. Cond. lever contacts0.20.30.50.50.4-0.7
Pavlov. Cond. magazine entry number0.50.70.8-0.8-0.90.8
Pavlov. Cond. intertrial magazine entries1.41.62.21.51.1-1.3
Pavlov. Cond. lever-magazine prob. diff.0.10.10.20.30.2-0.4
Pavlov. Cond. response bias0.50.60.70.80.8-0.8
Bone: apparent density3.65.98.12.51.9-2.8
Bone surface3.66.47.82.62.1-2.8
Bone volume3.86.58.92.52.1-3.0
Bone: connectivity density1.21.92.71.50.9-1.6
Bone: cortical apparent density5.16.78.4-2.4-2.92.4
Bone: cortical area0.20.30.40.30.6-0.6
Bone: cortical porosity4.54.95.12.22.3-2.1
Bone: cortical porosity5.86.36.42.52.5-2.5
Bone: cortical thickness1.01.72.4-1.6-1.11.2
Bone: cortical thickness2.12.53.1-1.8-1.21.7
Bone: cortical tissue density5.26.88.5-2.4-2.92.4
Bone: elastic displacement0.20.20.3-0.5-0.40.5
Bone: elastic work1.21.52.01.21.0-1.4
Bone: endosteal estimation5.311.411.93.43.2-3.4
Bone: endosteal perimeter3.77.68.12.82.6-2.8
Bone: final force3.96.37.22.42.4-2.7
Bone: final moment3.15.16.12.22.2-2.5
Bone: marrow area5.010.811.33.43.2-3.3
Bone: maximum diameter0.40.80.90.91.0-0.8
Bone: maximum force5.18.810.22.92.8-3.2
Bone: maximum moment4.37.58.92.62.6-3.0
Bone: minimum diameter1.22.32.31.51.5-1.5
Bone: periosteal estimation3.47.07.42.62.6-2.7
Bone: periosteal perimeter2.64.34.52.02.1-2.1
Bone: post-yield work2.43.34.01.71.8-2.0
Bone: stiffness5.07.88.62.82.7-2.9
Bone: tissue strength1.91.92.41.31.3-1.5
Bone: trabecular number1.92.94.81.61.2-2.2
Bone: trabecular spacing1.11.42.4-1.2-0.81.6
Bone: trabecular thickness1.21.42.31.10.8-1.5
Bone: trabecular tissue density0.20.20.40.70.3-0.5
Breakpoint value in progressive ratio session1.21.41.61.11.3-1.1
Distance traveled before self-admin2.72.93.61.61.9-1.6
Distance traveled after self-admin0.00.00.1-0.10.00.2
Delta time in closed arm before/after self-admin0.50.50.6-0.7-0.60.8
Delta time in open arm before/after self-admin3.93.73.92.01.8-2.0
Diff in mean of infusions in LGA sessions0.30.40.40.60.6-0.7
Extinction: sum of active levers before priming2.92.93.51.71.9-1.5
Active lever presses in extinction session 62.12.02.41.31.3-1.5
Delta distance traveled before/after self-admin0.70.80.9-0.9-0.90.8
Delta ambulatory time before/after self-admin0.30.40.5-0.5-0.70.5
Time in closed arm before self-admin2.02.32.61.61.5-1.5
Time in closed arm after self-admin0.20.20.3-0.4-0.40.5
Time in open arm before self-admin1.41.51.9-1.4-1.11.2
Time in open arm after self-admin1.92.12.11.41.4-1.4
Sum of active levers in priming session hrs 5-63.33.23.51.61.9-1.9
Time to tail flick, vehicle, before self-admin0.40.40.7-0.8-0.60.5
Time to tail flick, vehicle, after self-admin0.30.30.30.60.5-0.5
Time to tail flick, test, before self-admin0.10.10.1-0.2-0.30.3
Time to tail flick, test, after self-admin1.01.11.3-1.1-1.01.0
Delta time to tail flick, vehicle, before/after SA0.90.91.21.10.9-0.8
Delta time to tail flick, test, before/after SA0.50.40.6-0.8-0.60.6
Ambulatory time before self-admin1.41.52.11.11.4-1.1
Ambulatory time after self-admin0.20.20.2-0.5-0.40.4
Total heroin consumption1.11.41.71.21.3-1.0
Area under the delay curve0.60.60.7-0.7-0.90.7
Delay disc. indifference point, 0s delay1.01.11.1-1.1-1.11.1
Delay disc. indifference point, 16s delay0.30.30.5-0.4-0.70.5
Delay disc. indifference point, 2s delay0.60.70.7-0.9-0.70.8
Delay disc. indifference point, 24s delay0.20.20.3-0.5-0.50.4
Delay disc. indifference point, 4s delay2.32.42.7-1.5-1.61.5
Delay disc. indifference point, 8s delay0.00.00.00.0-0.20.1
Delay discount exponential model param0.40.40.50.60.7-0.6
Delay discount hyperbolic model param0.70.80.90.81.0-0.9
Fecal boli incidents, locomotor time 10.20.20.3-0.5-0.60.2
Change in fecal boli incidents, locomotor task0.00.00.10.20.3-0.1
Time >=10cm from walls, locomotor time 11.01.01.3-1.0-0.91.2
Bouts of movement, locomotor time 10.10.10.2-0.3-0.40.2
Total resting periods, locomotor time 10.60.71.0-0.8-1.00.6
Rest time, locomotor task time 10.40.50.50.70.7-0.7
Distance moved, locomotor task time 10.40.40.5-0.7-0.60.6
Vertical activity count, locomotor time 10.80.91.0-0.9-0.91.0
Time >=10cm from walls, locomotor time 20.60.60.80.80.9-0.6
Bouts of movement, locomotor time 21.92.02.4-1.5-1.51.2
Total resting periods, locomotor time 21.92.12.3-1.5-1.51.3
Rest time, locomotor task time 20.00.00.00.10.2-0.2
Distance moved, locomotor task time 20.10.10.1-0.3-0.30.3
Vertical activity count, locomotor time 20.30.30.4-0.6-0.60.5
Weight adjusted by age0.00.00.1-0.2-0.1-0.0
Seeking ratio, delayed vs. immediate footshock1.61.81.91.41.3-1.3
Locomotion in novel chamber1.21.51.6-1.3-1.31.1
Locomotion in novel chamber post-restriction0.91.01.1-1.0-1.01.0
Progressive ratio0.10.10.2-0.3-0.40.3
Food seeking constrained by brief footshock0.10.10.1-0.1-0.20.4
Seeking ratio, punishment vs. effort0.10.10.10.30.2-0.2
Run reversals in cocaine runway, females0.00.00.00.0-0.1-0.1
Run reversals in cocaine runway, males0.40.40.5-0.7-0.70.6
Latency to leave start box in cocaine runway3.94.35.0-2.0-2.02.2
Latency to leave start box in cocaine runway, F2.62.93.6-1.6-1.51.9
Latency to leave start box in cocaine runway, M1.41.31.4-1.1-1.21.2
Cd content in liver0.50.60.80.80.6-0.9
Co content in liver0.10.20.2-0.4-0.30.5
Cu content in liver0.20.20.30.50.4-0.6
Fe content in liver2.73.23.92.01.4-1.9
K content in liver0.10.10.1-0.3-0.20.0
Mg content in liver0.10.10.20.10.3-0.5
Mn content in liver2.32.63.2-1.7-1.81.3
Na content in liver0.20.20.3-0.5-0.50.3
Rb content in liver0.50.60.8-0.9-0.90.5
Se content in liver0.20.20.30.50.1-0.6
Sr content in liver2.11.92.21.31.3-1.5
Zn content in liver0.10.10.20.30.0-0.5