ENSRNOG00000066458

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver alternative TSS ENSRNOT00000095915 0.07 0.05 2.7e-08 0.08 0.06 0.07 0.07 5.9e-09 1.8e-07 3.6e-08 4.2e-08
2 Liver alternative TSS ENSRNOT00000096628 0.07 0.04 4.0e-08 0.07 0.06 0.06 0.06 1.7e-08 4.9e-07 1.3e-07 1.4e-07
3 Liver gene expression ENSRNOG00000066458 0.22 0.09 0.0e+00 0.15 0.16 0.16 0.16 2.0e-16 7.3e-18 8.9e-18 6.8e-18
4 Liver mRNA stability ENSRNOG00000066458 0.2 0.08 0.0e+00 0.2 0.22 0.21 0.21 2.2e-21 5.3e-24 1.7e-22 3.7e-23

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail5.016.319.34.0-4.0-3.74.4
BMI without tail3.88.08.32.9-2.9-2.72.9
Body weight2.410.013.43.1-3.1-2.73.7
Epididymis fat weight1.43.25.51.8-1.8-1.12.4
Glucose0.60.91.2-1.01.01.1-0.7
Heart weight0.30.41.0-0.50.50.2-1.0
Left kidney weight5.014.414.93.9-3.9-3.63.9
Right kidney weight8.825.028.45.0-5.0-4.65.3
Tail length0.41.11.1-1.01.01.1-1.0
Length with tail0.10.30.6-0.60.60.7-0.1
Length without tail0.30.61.10.7-0.7-0.51.1
Liver weight, left0.20.30.5-0.60.60.7-0.1
Liver weight, right1.32.23.3-1.61.61.8-0.8
Parametrial fat weight0.10.10.30.4-0.4-0.50.2
Retroperitoneal fat weight1.34.45.82.1-2.1-1.82.4
Intraocular pressure0.00.00.0-0.10.10.2-0.1
Extensor digitorum longus weight0.31.41.41.2-1.2-1.11.2
Soleus weight0.92.82.81.7-1.7-1.61.7
Tibialis anterior weight0.00.00.10.2-0.2-0.20.2
Tibia length1.95.35.9-2.42.42.2-2.2
Number of licking bursts0.00.00.00.1-0.1-0.1-0.2
Food consumed during 24 hour testing period2.93.43.61.9-1.9-1.81.9
Times rat made contact with spout1.01.12.31.0-1.0-1.50.4
Mean time between licks in bursts2.33.24.9-1.71.71.4-2.2
Mean num. licks in bursts0.10.10.20.2-0.2-0.40.1
Std. dev. time between licks in bursts0.91.12.11.0-1.0-0.61.4
Water consumed over 24 hours0.40.50.70.7-0.7-0.70.8
Indifference point 0 sec0.30.40.60.6-0.6-0.60.8
Indifference point AUC0.60.71.7-0.70.71.30.2
Indifference point function ln k2.33.24.01.8-1.8-2.01.6
Indifference point function log k2.33.24.01.8-1.8-2.01.6
Delay discounting total patch changes 0 sec0.10.20.20.4-0.4-0.40.4
Delay discounting total patch changes 12 sec0.10.10.3-0.10.10.50.4
Delay discounting total patch changes 18 sec1.72.33.2-1.51.51.8-1.1
Delay discounting total patch changes 24 sec0.50.60.9-0.70.70.9-0.5
Delay discounting total patch changes 6 sec0.10.10.2-0.10.10.40.5
Delay discounting time to switch 0 sec0.30.50.8-0.70.70.6-0.9
Delay discounting water rate 0 sec0.81.31.41.1-1.1-1.21.1
Delay discounting water rate 12 sec2.02.93.11.7-1.7-1.71.8
Delay discounting water rate 18 sec3.85.05.92.2-2.2-2.42.0
Delay discounting water rate 24 sec1.62.22.81.5-1.5-1.71.1
Delay discounting water rate 6 sec0.81.21.31.1-1.1-1.11.0
Locomotor activity0.20.30.80.5-0.5-0.20.9
Locomotor testing distance0.40.70.9-0.80.80.7-0.9
Locomotor testing rearing0.40.61.3-0.70.71.20.0
Light reinforcement 10.40.71.20.8-0.8-0.41.1
Light reinforcement 22.22.95.31.6-1.6-1.12.3
Reaction time number correct0.60.91.3-0.90.90.8-1.2
Reaction time mean minus median0.10.10.10.3-0.3-0.20.4
Reaction time mean minus median AUC0.20.20.20.5-0.5-0.40.4
Reaction time num false alarms0.10.10.1-0.20.20.3-0.4
Reaction time num false alarms AUC0.00.00.2-0.10.1-0.0-0.4
Reaction time trials correct on left0.60.91.3-0.90.90.8-1.2
Reaction time trials on left0.60.91.4-0.90.90.8-1.2
Reaction time mean0.10.10.4-0.30.30.0-0.7
Reaction time mean AUC0.20.20.6-0.40.40.2-0.8
Median of all reaction times0.20.30.9-0.30.3-0.1-1.0
Reaction time omissions0.70.91.5-0.90.90.8-1.2
Reaction time false alarm rate0.00.00.00.2-0.2-0.10.1
Reaction time premature initiation rate2.73.76.71.9-1.9-1.12.6
Reaction time premature initiations0.91.32.41.1-1.1-0.51.6
Std. dev. reaction times0.00.10.10.3-0.3-0.30.1
Reaction time trials completed0.60.91.4-0.90.90.8-1.2
Reaction time trials AUC0.40.61.0-0.70.70.6-1.0
Social response proportion0.40.40.5-0.60.60.7-0.6
Social responses0.10.20.3-0.40.40.5-0.3
Social time0.30.40.80.6-0.6-0.90.3
Conditioned locomotion0.70.80.91.0-1.0-0.80.8
Cocaine response after cond. corrected1.82.02.21.5-1.5-1.41.4
Cocaine response after cond. not corrected4.14.64.92.2-2.2-2.22.0
Cocaine response before conditioning1.21.41.61.2-1.2-1.31.1
Saline control response1.21.62.61.2-1.2-0.91.6
Condit. Reinf. active minus inactive responses0.50.61.0-0.80.81.0-0.0
Condit. Reinf. active-inactive response ratio0.20.20.3-0.50.50.5-0.2
Condit. Reinf. active responses0.10.20.4-0.10.10.40.7
Condit. Reinf. inactive responses0.40.50.90.6-0.6-0.51.0
Condit. Reinf. lever presses0.81.12.10.9-0.9-0.71.5
Condit. Reinf. lever reinforcers received0.10.20.3-0.20.20.50.6
Pavlov. Cond. lever latency1.21.72.0-1.31.31.2-1.4
Pavlov. Cond. magazine entry latency0.30.40.50.6-0.6-0.50.7
Pavlov. Cond. change in total contacts0.10.10.3-0.10.10.20.5
Pavlov. Cond. index score0.81.01.50.9-0.9-0.91.2
Pavlov. Cond. latency score1.21.52.01.2-1.2-1.11.4
Pavlov. Cond. lever contacts1.21.71.91.3-1.3-1.31.4
Pavlov. Cond. magazine entry number0.40.50.8-0.60.60.6-0.9
Pavlov. Cond. intertrial magazine entries0.10.10.20.2-0.2-0.4-0.1
Pavlov. Cond. lever-magazine prob. diff.0.70.91.40.9-0.9-0.81.2
Pavlov. Cond. response bias0.50.60.80.8-0.8-0.70.9
Conditioned reinforcement - actives0.40.40.60.6-0.6-0.40.8
Conditioned reinforcement - inactives0.50.60.60.8-0.8-0.80.7
Conditioned locomotion3.54.25.02.1-2.1-1.82.2
Intermittent access intake day 1-15 change0.80.80.80.9-0.9-0.90.9
Intermittent access intake escalation1.11.11.31.1-1.1-1.01.1
Intermittent access intake escalation 22.62.53.81.6-1.6-1.22.0
Intermitt. access day 1 inactive lever presses1.31.42.31.2-1.2-0.81.5
Intermitt. access day 15 inactive lever presses4.75.25.32.3-2.3-2.32.2
Intermitt. access escalation Index0.60.51.0-0.70.70.4-1.0
Intermittent access day 1 total infusions0.10.10.20.3-0.3-0.40.0
Intermittent access day 15 total infusions0.30.30.40.6-0.6-0.60.5
Intermittent access terminal intake (last 3 days)2.62.93.41.7-1.7-1.51.9
Intermittent access total infusions0.30.40.40.6-0.6-0.60.6
Intermittent access day 1 locomotion0.10.10.10.3-0.3-0.40.2
Intermittent access day 15 total locomotion0.50.50.60.7-0.7-0.80.6
Intermittent access total locomotion0.80.91.21.0-1.0-1.10.7
Intermittent access standard deviation1.01.11.51.0-1.0-1.20.7
Cocaine induced anxiety4.04.65.22.2-2.2-2.31.9
Post-drug Anxiety3.43.84.21.9-1.9-1.82.0
Baseline Anxiety1.11.11.7-1.11.11.3-0.7
Lifetime Intake0.40.40.60.6-0.6-0.80.5
Incentive Sensitization - Responses0.40.40.80.6-0.6-0.40.9
Incentive Sensitization - Breakpoint0.30.30.60.6-0.6-0.30.8
Progressive ratio test 1 active lever presses0.40.40.90.6-0.6-0.90.2
Progressive ratio test 1 breakpoint0.50.61.10.7-0.7-1.00.3
Progressive ratio test 1 inactive lever presses0.30.30.40.6-0.6-0.60.5
Progressive ratio test 2 active lever presses0.50.50.60.7-0.7-0.70.7
Progressive ratio test 2 breakpoint0.40.40.40.7-0.7-0.60.7
Progressive ratio test 2 inactive lever presses0.50.60.60.8-0.8-0.70.8
Total sessions with >9 infusions0.50.60.70.7-0.7-0.90.6
Short access day 1 total inactive lever presses4.85.46.32.4-2.4-2.51.9
Short access day 10 total inactive lever presses9.210.114.13.1-3.1-2.63.8
Short access day 1 total infusions0.80.91.40.9-0.9-1.20.6
Short access day 10 total infusions1.31.41.81.2-1.2-1.40.9
Short access total infusions0.60.71.10.8-0.8-1.10.5
Short access day 1 locomotion0.80.91.31.0-1.0-1.10.7
Short access day 10 total locomotion4.14.55.02.2-2.2-2.21.9
Short access total locomotion1.31.41.81.2-1.2-1.30.9
Compulsive drug intake0.70.70.7-0.90.90.9-0.7
One hour access (0.3 mA shock)0.30.30.90.5-0.5-0.20.9
One hour access (shock baseline)0.91.01.81.0-1.0-0.71.3
Number of responses in last shaping day0.00.00.00.1-0.1-0.2-0.1
Context. condit. distance diff. score1.82.22.51.5-1.5-1.61.3
Locomotion velocity, session 10.20.20.20.5-0.5-0.40.3
Locomotion distance, session 12.33.03.1-1.71.71.7-1.8
Locomotion velocity, session 21.01.21.31.1-1.1-0.91.1
Locomotion distance, session 20.91.41.4-1.21.21.2-1.1
Locomotion velocity, session 30.50.51.10.7-0.7-1.10.1
Locomotion distance, session 30.10.10.2-0.10.1-0.0-0.5
Stereotopy head waving bouts, day 32.02.42.8-1.61.61.7-1.3
Stereotopy head waving duration, day 30.80.91.0-1.01.00.9-1.0
Locomotion velocity, session 70.50.60.90.8-0.8-0.90.4
Locomotion distance, session 70.20.20.30.4-0.4-0.60.2
Stereotopy head waving bouts, day 70.10.10.2-0.30.30.4-0.3
Stereotopy head waving duration, day 70.40.50.8-0.70.70.6-0.9
Locomotion velocity, session 81.82.12.41.6-1.6-1.41.2
Locomotion distance, session 80.71.01.31.0-1.0-0.91.1
Degree of sensitization distance1.31.32.11.1-1.1-0.91.4
Degree of sensitization stereotypy0.00.00.00.1-0.1-0.1-0.1
Condit. Reinf. active minus inactive responses1.41.51.91.3-1.3-0.91.4
Condit. Reinf. active-inactive response ratio0.20.20.30.5-0.5-0.40.4
Condit. Reinf. active responses2.32.83.41.7-1.7-1.31.8
Condit. Reinf. inactive responses1.51.82.21.4-1.4-1.11.5
Incentive salience index mean2.12.63.71.6-1.6-1.11.9
Condit. Reinf. lever presses1.92.53.91.6-1.6-1.12.0
Time in familiar zone, hab. session 10.50.50.90.7-0.7-1.00.3
Time in novel zone, hab. session 10.70.71.1-0.80.81.1-0.6
Total zone transitions, hab. session 12.94.14.5-2.12.12.0-1.8
Total locomotion distance, hab. session 10.20.20.4-0.50.50.6-0.1
Locomotion velocity, hab. session 10.30.40.7-0.70.70.8-0.2
Time in familiar zone, hab. session 22.02.12.91.5-1.5-1.71.0
Time in novel zone, hab. session 21.92.02.2-1.41.41.5-1.3
Total zone transitions, hab. session 20.00.10.20.2-0.2-0.40.1
Total locomotion distance, hab. session 20.91.21.31.1-1.1-1.11.2
Locomotion velocity, hab. session 20.81.01.31.0-1.0-1.01.2
Novel to familiar place preference ratio0.10.10.4-0.10.1-0.1-0.6
Novelty place preference0.10.10.20.2-0.2-0.3-0.4
Time in novel zone, NPP test0.10.10.30.1-0.1-0.3-0.5
Total zone transitions, NPP test0.71.11.2-1.11.10.9-1.0
Total locomotion distance, NPP test0.00.00.0-0.00.00.20.2
Locomotion velocity, NPP test0.00.00.10.1-0.10.10.3
Pavlov. Cond. lever latency1.01.31.7-1.11.10.9-1.3
Pavlov. Cond. magazine entry latency0.30.40.5-0.60.60.5-0.7
Pavlov. Cond. change in total contacts0.00.00.1-0.00.00.30.1
Pavlov. Cond. index score0.00.00.00.1-0.1-0.00.2
Pavlov. Cond. latency score0.10.10.20.4-0.4-0.20.5
Pavlov. Cond. lever contacts1.61.92.41.4-1.4-1.11.5
Pavlov. Cond. magazine entry number0.20.30.30.5-0.5-0.50.5
Pavlov. Cond. intertrial magazine entries1.21.42.11.2-1.2-0.91.4
Pavlov. Cond. lever-magazine prob. diff.0.00.00.00.0-0.00.10.1
Pavlov. Cond. response bias0.20.20.20.5-0.5-0.30.4
Bone: apparent density0.61.01.3-0.90.91.1-0.9
Bone surface0.61.01.9-1.01.01.4-0.6
Bone volume1.01.62.5-1.31.31.6-0.9
Bone: connectivity density0.20.40.5-0.50.50.7-0.7
Bone: cortical apparent density2.83.74.7-1.91.91.6-2.2
Bone: cortical area0.10.20.60.2-0.20.10.7
Bone: cortical porosity0.30.30.80.4-0.4-0.00.9
Bone: cortical porosity0.91.02.00.9-0.9-0.51.4
Bone: cortical thickness0.10.20.3-0.50.50.5-0.2
Bone: cortical thickness0.00.00.1-0.00.0-0.2-0.0
Bone: cortical tissue density2.63.44.3-1.81.81.5-2.1
Bone: elastic displacement0.10.10.1-0.20.20.2-0.4
Bone: elastic work0.30.40.60.6-0.6-0.50.8
Bone: endosteal estimation0.10.20.60.4-0.4-0.10.8
Bone: endosteal perimeter0.30.72.10.5-0.50.31.4
Bone: final force0.20.40.4-0.60.60.7-0.4
Bone: final moment0.30.50.5-0.70.70.7-0.6
Bone: marrow area0.10.10.40.3-0.3-0.00.6
Bone: maximum diameter0.71.22.11.0-1.0-0.71.5
Bone: maximum force0.10.10.1-0.30.30.4-0.1
Bone: maximum moment0.10.10.2-0.40.40.3-0.3
Bone: minimum diameter0.10.20.50.3-0.30.00.7
Bone: periosteal estimation0.20.30.90.4-0.4-0.01.0
Bone: periosteal perimeter0.40.72.00.6-0.6-0.01.4
Bone: post-yield work0.91.21.7-1.11.10.8-1.3
Bone: stiffness0.30.50.6-0.80.80.7-0.6
Bone: tissue strength0.50.50.7-0.70.70.5-0.9
Bone: trabecular number0.30.40.6-0.60.60.8-0.7
Bone: trabecular spacing1.62.02.11.4-1.4-1.51.4
Bone: trabecular thickness0.10.10.3-0.30.30.50.1
Bone: trabecular tissue density2.73.84.1-2.02.01.9-1.9
Breakpoint value in progressive ratio session1.01.11.51.0-1.0-0.91.2
Distance traveled before self-admin1.31.41.8-1.21.21.0-1.4
Distance traveled after self-admin0.10.20.30.4-0.4-0.6-0.0
Delta time in closed arm before/after self-admin0.10.10.30.3-0.3-0.60.1
Delta time in open arm before/after self-admin0.10.10.2-0.20.20.40.0
Diff in mean of infusions in LGA sessions2.02.32.51.5-1.5-1.41.6
Extinction: sum of active levers before priming0.10.10.1-0.20.20.30.2
Active lever presses in extinction session 62.52.42.41.5-1.5-1.51.5
Delta distance traveled before/after self-admin4.14.44.82.2-2.2-2.21.8
Delta ambulatory time before/after self-admin2.22.42.71.6-1.6-1.61.3
Time in closed arm before self-admin0.91.02.1-0.90.91.5-0.4
Time in closed arm after self-admin0.10.10.2-0.10.10.40.4
Time in open arm before self-admin0.10.10.20.1-0.1-0.4-0.2
Time in open arm after self-admin0.00.00.00.1-0.1-0.20.1
Sum of active levers in priming session hrs 5-60.30.30.30.6-0.6-0.50.5
Time to tail flick, vehicle, before self-admin1.31.32.01.1-1.1-0.81.4
Time to tail flick, vehicle, after self-admin1.11.11.91.1-1.1-0.71.4
Time to tail flick, test, before self-admin0.90.91.01.0-1.0-0.91.0
Time to tail flick, test, after self-admin2.32.42.71.6-1.6-1.31.7
Delta time to tail flick, vehicle, before/after SA0.80.70.8-0.90.90.8-0.9
Delta time to tail flick, test, before/after SA0.10.10.10.2-0.2-0.20.2
Ambulatory time before self-admin0.30.30.7-0.40.40.1-0.8
Ambulatory time after self-admin0.40.40.80.7-0.7-0.90.2
Total heroin consumption0.20.30.30.5-0.5-0.60.6
Area under the delay curve1.71.92.2-1.41.41.5-1.1
Delay disc. indifference point, 0s delay0.20.20.80.2-0.20.20.9
Delay disc. indifference point, 16s delay0.40.40.7-0.60.60.9-0.2
Delay disc. indifference point, 2s delay3.23.55.0-2.02.02.2-1.2
Delay disc. indifference point, 24s delay0.30.30.40.6-0.6-0.60.5
Delay disc. indifference point, 4s delay1.51.62.0-1.41.41.4-0.8
Delay disc. indifference point, 8s delay1.92.02.3-1.51.51.3-1.4
Delay discount exponential model param1.51.61.81.3-1.3-1.31.1
Delay discount hyperbolic model param1.71.82.01.4-1.4-1.41.0
Fecal boli incidents, locomotor time 10.40.40.7-0.60.60.4-0.8
Change in fecal boli incidents, locomotor task0.20.20.50.4-0.4-0.30.7
Time >=10cm from walls, locomotor time 10.60.61.30.7-0.7-0.31.1
Bouts of movement, locomotor time 10.30.40.50.7-0.7-0.60.4
Total resting periods, locomotor time 10.10.10.10.3-0.3-0.2-0.0
Rest time, locomotor task time 10.10.10.20.2-0.2-0.5-0.4
Distance moved, locomotor task time 10.40.41.00.5-0.5-0.31.0
Vertical activity count, locomotor time 11.21.22.41.0-1.0-0.61.5
Time >=10cm from walls, locomotor time 22.32.43.71.5-1.5-1.21.9
Bouts of movement, locomotor time 20.30.30.5-0.50.50.7-0.7
Total resting periods, locomotor time 20.40.50.6-0.60.60.8-0.8
Rest time, locomotor task time 20.81.02.2-0.80.80.5-1.5
Distance moved, locomotor task time 22.02.33.71.4-1.4-1.11.9
Vertical activity count, locomotor time 22.73.04.61.7-1.7-1.32.1
Weight adjusted by age4.04.56.72.1-2.1-1.72.6
Seeking ratio, delayed vs. immediate footshock0.60.70.7-0.80.80.8-0.8
Locomotion in novel chamber0.60.70.91.0-1.0-1.00.4
Locomotion in novel chamber post-restriction0.00.00.1-0.10.10.40.1
Progressive ratio0.40.50.70.7-0.7-0.80.5
Food seeking constrained by brief footshock3.03.74.21.9-1.9-1.92.0
Seeking ratio, punishment vs. effort0.00.00.1-0.00.00.10.3
Run reversals in cocaine runway, females0.00.00.00.0-0.0-0.2-0.2
Run reversals in cocaine runway, males1.11.11.1-1.11.10.9-1.1
Latency to leave start box in cocaine runway1.82.02.11.5-1.5-1.41.3
Latency to leave start box in cocaine runway, F2.32.53.21.7-1.7-1.81.1
Latency to leave start box in cocaine runway, M0.00.00.0-0.10.10.20.2
Cd content in liver0.50.50.6-0.80.80.6-0.7
Co content in liver0.60.70.90.8-0.8-0.61.0
Cu content in liver2.02.45.1-1.41.40.7-2.2
Fe content in liver0.00.10.1-0.30.30.3-0.1
K content in liver0.00.00.00.1-0.1-0.0-0.1
Mg content in liver0.30.30.4-0.40.40.7-0.5
Mn content in liver0.00.00.10.3-0.3-0.00.2
Na content in liver5.45.77.4-2.42.42.7-2.0
Rb content in liver0.40.50.5-0.70.70.7-0.7
Se content in liver1.31.62.01.3-1.3-1.40.9
Sr content in liver1.41.22.2-1.11.10.7-1.5
Zn content in liver0.00.00.1-0.00.0-0.2-0.3