ENSRNOG00000065957

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000065957 0.02 0.02 7.5e-03 0 0.01 0.01 0.01 1.2e-01 1.2e-02 3.3e-02 5.7e-02
2 Brain intron excision ratio chr1:258565051:258626309 0.03 0.02 4.7e-03 0.05 0.03 0.05 0.05 1.1e-05 1.3e-03 3.0e-05 2.5e-05
3 PL gene expression ENSRNOG00000065957 0.12 0.07 1.1e-04 0.07 0.04 0.04 0.05 9.6e-06 2.5e-04 3.5e-04 1.1e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail14.546.952.3-7.0-6.3-7.2
BMI without tail6.914.417.3-4.2-3.3-3.9
Body weight12.753.758.7-7.6-6.7-7.7
Epididymis fat weight19.946.461.9-5.6-6.8-7.9
Glucose2.03.03.5-1.9-1.7-1.6
Heart weight6.18.79.4-2.8-3.0-3.1
Left kidney weight6.719.322.6-4.3-4.1-4.8
Right kidney weight6.819.422.7-4.6-3.8-4.8
Tail length0.00.10.1-0.30.10.3
Length with tail1.24.34.4-2.1-2.1-2.1
Length without tail4.610.012.4-2.3-3.5-3.5
Liver weight, left1.82.96.6-2.6-0.9-1.1
Liver weight, right2.74.510.4-3.2-1.1-1.4
Parametrial fat weight11.322.128.3-4.0-4.7-5.3
Retroperitoneal fat weight23.477.497.1-7.8-8.6-9.9
Intraocular pressure0.91.31.90.7-1.2-1.4
Extensor digitorum longus weight1.87.17.5-2.7-2.5-2.7
Soleus weight2.88.223.5-4.81.00.2
Tibialis anterior weight0.31.03.1-1.80.10.1
Tibia length0.41.11.6-0.6-1.3-1.2
Number of licking bursts1.41.61.71.3-1.3-1.2
Food consumed during 24 hour testing period0.20.20.30.6-0.4-0.3
Times rat made contact with spout0.20.20.3-0.5-0.4-0.5
Mean time between licks in bursts0.71.02.41.60.50.6
Mean num. licks in bursts1.51.83.1-1.81.10.9
Std. dev. time between licks in bursts1.11.43.82.0-0.5-0.3
Water consumed over 24 hours0.10.10.2-0.10.30.4
Indifference point 0 sec4.47.19.7-1.7-3.1-2.9
Indifference point AUC1.01.11.6-0.5-1.3-1.2
Indifference point function ln k0.10.10.2-0.2-0.1-0.5
Indifference point function log k0.10.10.2-0.2-0.1-0.5
Delay discounting total patch changes 0 sec5.38.611.5-1.8-3.4-3.3
Delay discounting total patch changes 12 sec4.35.78.7-1.1-2.9-2.7
Delay discounting total patch changes 18 sec2.33.04.6-1.0-2.1-1.9
Delay discounting total patch changes 24 sec1.51.93.4-0.1-1.9-1.5
Delay discounting total patch changes 6 sec5.27.911.7-0.9-3.4-3.3
Delay discounting time to switch 0 sec3.65.68.41.22.92.6
Delay discounting water rate 0 sec4.97.710.1-1.8-3.2-3.1
Delay discounting water rate 12 sec3.24.86.9-0.8-2.6-2.6
Delay discounting water rate 18 sec1.01.32.0-1.4-0.8-1.1
Delay discounting water rate 24 sec2.23.06.2-2.5-0.9-1.4
Delay discounting water rate 6 sec1.42.02.7-1.6-1.2-1.4
Locomotor activity0.10.20.50.10.50.7
Locomotor testing distance0.40.71.0-0.11.01.0
Locomotor testing rearing0.91.42.0-0.71.41.3
Light reinforcement 10.10.10.2-0.2-0.5-0.2
Light reinforcement 20.20.20.40.6-0.10.5
Reaction time number correct0.81.11.5-0.81.11.2
Reaction time mean minus median0.70.92.2-1.50.60.3
Reaction time mean minus median AUC3.03.95.2-2.32.01.6
Reaction time num false alarms0.81.21.9-0.7-1.4-1.0
Reaction time num false alarms AUC0.60.91.1-1.1-1.0-0.7
Reaction time trials correct on left0.81.11.5-0.81.11.2
Reaction time trials on left0.91.31.7-0.91.21.3
Reaction time mean3.44.78.3-1.22.92.1
Reaction time mean AUC4.56.010.2-1.33.22.4
Median of all reaction times4.66.211.0-1.13.32.5
Reaction time omissions0.40.50.7-0.80.80.5
Reaction time false alarm rate1.31.93.1-0.3-1.8-1.6
Reaction time premature initiation rate0.81.11.2-1.1-1.0-1.1
Reaction time premature initiations0.50.82.1-1.5-0.2-0.3
Std. dev. reaction times1.11.53.1-1.81.10.5
Reaction time trials completed0.91.31.7-0.91.21.3
Reaction time trials AUC0.71.01.2-0.91.01.1
Social response proportion1.11.22.4-1.6-0.7-0.9
Social responses2.43.14.2-1.3-1.9-2.1
Social time1.31.72.3-1.51.41.0
Conditioned locomotion0.50.61.00.10.81.0
Cocaine response after cond. corrected2.63.04.50.52.12.0
Cocaine response after cond. not corrected3.64.05.41.22.32.3
Cocaine response before conditioning0.50.72.01.4-0.1-0.1
Saline control response0.10.10.2-0.30.20.5
Condit. Reinf. active minus inactive responses0.70.81.5-0.1-1.2-1.0
Condit. Reinf. active-inactive response ratio0.80.81.2-0.6-1.1-1.0
Condit. Reinf. active responses1.52.03.5-0.5-1.9-1.6
Condit. Reinf. inactive responses0.50.61.1-0.4-1.1-0.8
Condit. Reinf. lever presses1.01.42.3-0.6-1.5-1.2
Condit. Reinf. lever reinforcers received1.11.63.0-0.0-1.7-1.4
Pavlov. Cond. lever latency0.50.71.6-0.31.30.7
Pavlov. Cond. magazine entry latency0.50.50.80.00.90.9
Pavlov. Cond. change in total contacts0.00.00.10.3-0.00.1
Pavlov. Cond. index score0.00.00.0-0.1-0.20.1
Pavlov. Cond. latency score0.00.00.00.1-0.10.1
Pavlov. Cond. lever contacts0.20.30.90.0-0.9-0.3
Pavlov. Cond. magazine entry number0.10.20.30.2-0.5-0.5
Pavlov. Cond. intertrial magazine entries2.22.83.8-1.1-1.9-2.0
Pavlov. Cond. lever-magazine prob. diff.0.00.00.0-0.10.00.2
Pavlov. Cond. response bias0.10.20.30.3-0.6-0.1
Conditioned reinforcement - actives3.43.35.61.41.62.4
Conditioned reinforcement - inactives0.30.30.70.5-0.00.9
Conditioned locomotion2.02.43.21.61.21.8
Intermittent access intake day 1-15 change0.60.61.3-0.21.10.8
Intermittent access intake escalation0.90.91.9-0.41.40.8
Intermittent access intake escalation 20.70.71.4-0.21.20.8
Intermitt. access day 1 inactive lever presses0.10.10.1-0.3-0.3-0.2
Intermitt. access day 15 inactive lever presses0.30.30.6-0.8-0.3-0.5
Intermitt. access escalation Index0.60.60.8-0.20.90.9
Intermittent access day 1 total infusions0.20.20.40.30.30.7
Intermittent access day 15 total infusions1.21.32.1-0.11.51.4
Intermittent access terminal intake (last 3 days)0.60.71.2-0.20.81.1
Intermittent access total infusions0.60.71.20.10.91.1
Intermittent access day 1 locomotion1.51.52.8-0.11.41.7
Intermittent access day 15 total locomotion0.10.10.3-0.5-0.10.0
Intermittent access total locomotion0.60.71.0-0.40.91.0
Intermittent access standard deviation0.80.81.00.80.91.0
Cocaine induced anxiety1.51.74.82.20.10.5
Post-drug Anxiety0.60.61.51.2-0.4-0.5
Baseline Anxiety0.50.51.3-1.1-0.2-0.5
Lifetime Intake0.60.71.00.40.91.0
Incentive Sensitization - Responses1.61.64.7-2.2-0.1-0.2
Incentive Sensitization - Breakpoint1.41.54.2-2.1-0.2-0.3
Progressive ratio test 1 active lever presses1.71.83.1-0.11.51.8
Progressive ratio test 1 breakpoint1.51.63.00.11.31.7
Progressive ratio test 1 inactive lever presses0.30.30.50.60.30.7
Progressive ratio test 2 active lever presses0.90.92.4-1.60.30.5
Progressive ratio test 2 breakpoint1.01.12.9-1.70.40.4
Progressive ratio test 2 inactive lever presses0.10.10.20.3-0.50.2
Total sessions with >9 infusions0.10.10.2-0.30.20.5
Short access day 1 total inactive lever presses0.30.40.90.9-0.5-0.1
Short access day 10 total inactive lever presses1.11.21.9-0.7-1.2-1.4
Short access day 1 total infusions0.10.10.3-0.50.0-0.0
Short access day 10 total infusions1.82.02.70.71.71.6
Short access total infusions0.80.81.20.41.11.1
Short access day 1 locomotion0.40.50.7-0.40.70.9
Short access day 10 total locomotion0.20.20.4-0.40.60.5
Short access total locomotion1.41.42.2-0.81.21.5
Compulsive drug intake0.40.40.90.4-0.3-1.0
One hour access (0.3 mA shock)1.11.31.70.71.31.3
One hour access (shock baseline)1.11.32.40.51.11.6
Number of responses in last shaping day0.10.10.30.20.30.5
Context. condit. distance diff. score0.20.30.50.2-0.7-0.5
Locomotion velocity, session 10.20.20.50.70.30.3
Locomotion distance, session 10.20.20.40.40.20.6
Locomotion velocity, session 20.50.60.80.90.80.7
Locomotion distance, session 20.71.01.5-0.8-1.2-0.9
Locomotion velocity, session 30.20.20.40.70.40.3
Locomotion distance, session 30.00.00.00.10.2-0.1
Stereotopy head waving bouts, day 30.81.01.50.11.21.2
Stereotopy head waving duration, day 30.70.91.30.61.01.1
Locomotion velocity, session 71.21.32.00.0-1.4-1.4
Locomotion distance, session 71.01.21.7-0.6-1.3-1.3
Stereotopy head waving bouts, day 70.10.10.20.4-0.20.0
Stereotopy head waving duration, day 70.30.30.6-0.00.60.7
Locomotion velocity, session 81.11.43.61.9-0.6-0.3
Locomotion distance, session 81.42.23.31.3-1.8-1.3
Degree of sensitization distance0.80.81.3-0.4-1.2-1.0
Degree of sensitization stereotypy0.50.50.9-0.3-0.9-0.8
Condit. Reinf. active minus inactive responses0.70.71.41.2-0.8-0.5
Condit. Reinf. active-inactive response ratio0.70.72.01.40.10.4
Condit. Reinf. active responses3.54.36.70.3-2.6-2.5
Condit. Reinf. inactive responses5.76.710.2-0.4-3.1-3.2
Incentive salience index mean0.70.81.30.7-1.1-0.9
Condit. Reinf. lever presses0.40.50.7-0.2-0.9-0.8
Time in familiar zone, hab. session 11.61.54.2-2.1-0.2-0.3
Time in novel zone, hab. session 11.81.75.02.2-0.10.3
Total zone transitions, hab. session 10.91.31.9-1.4-1.1-0.9
Total locomotion distance, hab. session 11.21.72.61.0-1.6-1.2
Locomotion velocity, hab. session 11.01.42.30.9-1.5-1.1
Time in familiar zone, hab. session 20.10.10.40.6-0.2-0.2
Time in novel zone, hab. session 20.10.10.3-0.50.20.1
Total zone transitions, hab. session 20.30.41.1-1.10.10.3
Total locomotion distance, hab. session 20.60.81.4-0.5-1.2-0.8
Locomotion velocity, hab. session 20.50.61.0-0.7-1.0-0.6
Novel to familiar place preference ratio1.31.42.31.5-1.1-0.9
Novelty place preference1.01.02.01.4-0.8-0.7
Time in novel zone, NPP test1.41.52.01.4-1.2-1.0
Total zone transitions, NPP test0.40.61.1-1.0-0.7-0.4
Total locomotion distance, NPP test1.11.52.60.2-1.6-1.3
Locomotion velocity, NPP test0.60.91.70.2-1.3-1.0
Pavlov. Cond. lever latency0.81.01.31.10.90.9
Pavlov. Cond. magazine entry latency0.20.20.5-0.7-0.3-0.3
Pavlov. Cond. change in total contacts0.80.91.9-1.4-0.5-0.7
Pavlov. Cond. index score0.50.61.2-1.1-0.5-0.5
Pavlov. Cond. latency score0.40.51.0-1.0-0.5-0.5
Pavlov. Cond. lever contacts0.50.61.2-1.1-0.6-0.6
Pavlov. Cond. magazine entry number0.20.30.80.9-0.2-0.2
Pavlov. Cond. intertrial magazine entries3.44.06.6-0.6-2.3-2.6
Pavlov. Cond. lever-magazine prob. diff.0.50.71.3-1.1-0.6-0.6
Pavlov. Cond. response bias0.30.41.1-1.0-0.1-0.2
Bone: apparent density3.66.09.3-0.5-3.0-2.9
Bone surface3.35.88.6-0.6-2.9-2.9
Bone volume3.86.58.7-1.5-2.9-3.0
Bone: connectivity density1.82.94.60.3-2.1-2.0
Bone: cortical apparent density2.73.65.61.12.02.4
Bone: cortical area8.713.218.7-1.9-4.2-4.3
Bone: cortical porosity0.20.20.4-0.1-0.5-0.6
Bone: cortical porosity0.50.50.8-0.4-0.8-0.9
Bone: cortical thickness7.913.118.7-1.6-4.2-4.3
Bone: cortical thickness4.35.15.9-2.0-2.3-2.4
Bone: cortical tissue density3.44.56.91.22.32.6
Bone: elastic displacement0.40.50.7-0.80.70.5
Bone: elastic work1.21.54.0-2.0-0.3-0.6
Bone: endosteal estimation0.61.31.6-1.1-1.1-1.3
Bone: endosteal perimeter0.81.73.8-1.9-0.6-0.9
Bone: final force5.69.211.9-2.0-3.4-3.4
Bone: final moment5.18.410.9-1.9-3.3-3.3
Bone: marrow area0.71.52.0-1.1-1.2-1.4
Bone: maximum diameter2.34.15.8-1.5-2.1-2.4
Bone: maximum force5.08.712.2-1.6-3.4-3.5
Bone: maximum moment4.57.911.1-1.5-3.2-3.3
Bone: minimum diameter3.87.19.5-1.7-3.0-3.1
Bone: periosteal estimation4.49.012.5-2.0-3.2-3.5
Bone: periosteal perimeter3.96.58.4-2.9-2.2-2.5
Bone: post-yield work3.64.87.10.5-2.7-2.7
Bone: stiffness3.14.97.4-0.5-2.7-2.6
Bone: tissue strength0.60.60.80.90.70.7
Bone: trabecular number2.74.27.2-0.1-2.7-2.4
Bone: trabecular spacing2.22.83.11.51.81.8
Bone: trabecular thickness5.56.68.2-2.1-2.7-2.9
Bone: trabecular tissue density3.14.36.6-0.12.62.5
Breakpoint value in progressive ratio session0.00.00.1-0.20.1-0.2
Distance traveled before self-admin2.72.94.7-0.72.21.9
Distance traveled after self-admin1.82.03.1-0.21.71.8
Delta time in closed arm before/after self-admin0.40.30.70.60.80.0
Delta time in open arm before/after self-admin0.70.72.01.40.10.3
Diff in mean of infusions in LGA sessions0.00.00.10.3-0.10.2
Extinction: sum of active levers before priming0.40.41.0-0.11.00.5
Active lever presses in extinction session 60.20.20.6-0.70.00.1
Delta distance traveled before/after self-admin0.00.00.00.00.00.1
Delta ambulatory time before/after self-admin0.10.10.30.2-0.5-0.0
Time in closed arm before self-admin0.81.02.0-1.40.70.7
Time in closed arm after self-admin2.02.03.3-0.61.81.6
Time in open arm before self-admin1.31.43.71.9-0.70.2
Time in open arm after self-admin1.41.54.02.0-0.6-0.2
Sum of active levers in priming session hrs 5-62.32.23.80.91.42.0
Time to tail flick, vehicle, before self-admin2.22.24.30.4-2.1-1.5
Time to tail flick, vehicle, after self-admin0.60.61.3-0.2-0.7-1.1
Time to tail flick, test, before self-admin0.80.81.7-0.40.61.3
Time to tail flick, test, after self-admin0.10.10.20.4-0.2-0.0
Delta time to tail flick, vehicle, before/after SA0.60.61.3-1.10.5-0.3
Delta time to tail flick, test, before/after SA1.21.11.90.7-1.0-1.4
Ambulatory time before self-admin1.41.52.7-0.31.71.3
Ambulatory time after self-admin1.92.13.80.01.62.0
Total heroin consumption1.11.31.6-1.3-1.2-0.9
Area under the delay curve1.11.23.6-1.90.2-0.0
Delay disc. indifference point, 0s delay0.50.51.1-1.1-0.4-0.5
Delay disc. indifference point, 16s delay0.90.92.7-1.60.0-0.1
Delay disc. indifference point, 2s delay1.71.92.4-1.41.51.2
Delay disc. indifference point, 24s delay0.60.61.3-1.1-0.7-0.3
Delay disc. indifference point, 4s delay0.80.91.8-1.30.60.7
Delay disc. indifference point, 8s delay0.70.82.1-1.50.30.2
Delay discount exponential model param1.31.44.02.0-0.3-0.2
Delay discount hyperbolic model param1.31.43.92.0-0.5-0.3
Fecal boli incidents, locomotor time 10.40.40.70.3-0.7-0.9
Change in fecal boli incidents, locomotor task1.41.32.4-0.0-1.5-1.3
Time >=10cm from walls, locomotor time 10.20.20.40.6-0.4-0.2
Bouts of movement, locomotor time 10.20.30.70.10.30.9
Total resting periods, locomotor time 10.20.20.6-0.10.20.8
Rest time, locomotor task time 10.60.61.4-0.1-1.2-0.8
Distance moved, locomotor task time 10.40.40.9-0.50.90.3
Vertical activity count, locomotor time 10.20.20.5-0.70.4-0.1
Time >=10cm from walls, locomotor time 22.52.74.00.2-2.0-2.0
Bouts of movement, locomotor time 23.84.17.50.32.22.7
Total resting periods, locomotor time 24.04.37.70.12.32.8
Rest time, locomotor task time 20.50.60.9-0.21.00.8
Distance moved, locomotor task time 20.80.91.50.1-1.1-1.2
Vertical activity count, locomotor time 20.80.91.30.3-1.2-1.1
Weight adjusted by age3.64.05.8-2.0-1.5-2.4
Seeking ratio, delayed vs. immediate footshock2.22.53.41.81.21.6
Locomotion in novel chamber0.20.20.4-0.70.40.2
Locomotion in novel chamber post-restriction0.30.41.1-1.0-0.10.3
Progressive ratio2.12.45.12.30.61.4
Food seeking constrained by brief footshock1.82.22.81.71.11.6
Seeking ratio, punishment vs. effort0.60.72.0-1.40.3-0.3
Run reversals in cocaine runway, females0.10.10.10.2-0.3-0.2
Run reversals in cocaine runway, males0.40.40.8-0.40.90.4
Latency to leave start box in cocaine runway3.63.96.10.22.32.5
Latency to leave start box in cocaine runway, F1.51.62.6-0.01.51.6
Latency to leave start box in cocaine runway, M2.62.43.9-0.22.01.9
Cd content in liver2.32.57.22.7-0.5-0.2
Co content in liver0.70.81.30.3-1.0-1.1
Cu content in liver0.20.20.4-0.20.60.5
Fe content in liver1.92.33.40.6-1.8-1.7
K content in liver1.11.11.8-0.21.31.2
Mg content in liver2.02.12.8-0.91.71.7
Mn content in liver0.30.30.9-1.00.10.2
Na content in liver1.01.02.0-1.40.80.6
Rb content in liver1.31.62.5-0.21.51.6
Se content in liver0.70.81.01.0-0.8-0.9
Sr content in liver2.12.02.80.61.71.7
Zn content in liver2.52.73.6-1.51.91.5