ENSRNOG00000065844

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000065844 0.13 0.07 2.0e-06 0.04 0.1 0.09 0.08 4.3e-03 5.4e-06 1.4e-05 3.3e-05
2 Brain gene expression ENSRNOG00000065844 0.09 0.06 2.5e-07 0.08 0.07 0.05 0.07 5.3e-08 2.8e-07 3.5e-05 1.9e-07
3 NAcc gene expression ENSRNOG00000065844 0.07 0.04 1.6e-05 0.06 0.06 0.06 0.05 2.7e-05 3.9e-05 2.6e-05 7.4e-05
4 PL gene expression ENSRNOG00000065844 0.04 0.03 2.8e-03 0.01 0.02 0 0.01 2.6e-02 2.0e-02 2.6e-01 8.1e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.41.43.30.41.81.50.1
BMI without tail3.67.616.61.24.13.50.5
Body weight4.117.221.93.84.64.73.3
Epididymis fat weight1.02.23.81.02.01.90.7
Glucose2.23.36.9-0.7-2.6-2.4-0.3
Heart weight0.30.40.70.60.80.80.5
Left kidney weight0.30.91.91.20.20.41.4
Right kidney weight0.10.30.60.6-0.00.20.8
Tail length5.015.321.23.34.64.62.8
Length with tail3.512.914.83.83.23.63.7
Length without tail0.81.73.81.6-0.8-0.21.9
Liver weight, left0.20.20.40.5-0.5-0.30.7
Liver weight, right3.04.95.82.41.82.22.4
Parametrial fat weight1.83.64.21.82.02.11.7
Retroperitoneal fat weight4.715.520.93.44.64.62.9
Intraocular pressure0.20.40.80.30.90.70.1
Extensor digitorum longus weight0.20.81.8-1.00.70.4-1.3
Soleus weight1.54.35.41.92.32.31.7
Tibialis anterior weight0.00.10.2-0.30.40.3-0.4
Tibia length11.332.036.06.05.25.55.8
Number of licking bursts0.10.20.30.20.60.50.2
Food consumed during 24 hour testing period0.40.50.70.60.80.80.4
Times rat made contact with spout1.82.13.21.80.91.11.8
Mean time between licks in bursts1.62.32.6-1.5-1.6-1.6-1.4
Mean num. licks in bursts0.20.30.50.70.10.20.7
Std. dev. time between licks in bursts0.70.81.3-0.71.10.8-1.0
Water consumed over 24 hours0.20.20.50.6-0.3-0.10.7
Indifference point 0 sec0.10.10.20.20.40.40.2
Indifference point AUC0.00.00.1-0.2-0.2-0.1-0.2
Indifference point function ln k0.91.21.4-1.2-1.0-1.1-1.2
Indifference point function log k0.91.21.4-1.2-1.0-1.1-1.2
Delay discounting total patch changes 0 sec0.00.10.20.00.40.4-0.1
Delay discounting total patch changes 12 sec0.00.00.00.2-0.00.10.2
Delay discounting total patch changes 18 sec0.50.61.3-1.0-0.2-0.3-1.1
Delay discounting total patch changes 24 sec0.50.61.00.70.91.00.5
Delay discounting total patch changes 6 sec0.50.81.11.00.60.81.0
Delay discounting time to switch 0 sec0.40.60.9-0.6-0.9-0.9-0.5
Delay discounting water rate 0 sec1.72.74.51.22.12.10.8
Delay discounting water rate 12 sec0.30.40.6-0.50.60.6-0.8
Delay discounting water rate 18 sec0.50.71.50.11.21.1-0.2
Delay discounting water rate 24 sec1.21.73.60.11.91.8-0.4
Delay discounting water rate 6 sec0.10.10.2-0.20.40.3-0.3
Locomotor activity0.50.91.1-0.9-1.0-1.1-0.8
Locomotor testing distance0.71.21.4-1.2-1.0-1.0-1.2
Locomotor testing rearing0.30.51.0-0.9-0.5-0.4-1.0
Light reinforcement 11.01.73.60.51.91.70.2
Light reinforcement 22.43.24.81.42.22.11.2
Reaction time number correct1.52.14.8-1.70.80.4-2.2
Reaction time mean minus median0.10.20.30.4-0.3-0.30.6
Reaction time mean minus median AUC0.20.20.50.60.00.20.7
Reaction time num false alarms0.30.40.6-0.7-0.4-0.7-0.6
Reaction time num false alarms AUC0.71.01.3-1.0-0.8-1.1-1.0
Reaction time trials correct on left1.52.14.8-1.70.80.4-2.2
Reaction time trials on left1.52.24.9-1.70.80.4-2.2
Reaction time mean0.20.20.50.30.70.60.1
Reaction time mean AUC0.20.20.50.10.70.6-0.1
Median of all reaction times0.20.20.50.10.70.7-0.1
Reaction time omissions0.10.10.30.20.50.50.0
Reaction time false alarm rate0.50.71.4-0.1-1.1-1.20.2
Reaction time premature initiation rate1.62.12.6-1.4-1.6-1.6-1.3
Reaction time premature initiations2.13.05.2-2.1-0.9-1.2-2.3
Std. dev. reaction times0.30.40.4-0.6-0.6-0.7-0.6
Reaction time trials completed1.52.24.9-1.70.80.4-2.2
Reaction time trials AUC1.52.14.6-1.70.90.5-2.2
Social response proportion0.60.60.9-0.9-0.7-0.6-0.9
Social responses0.10.10.2-0.4-0.1-0.1-0.4
Social time0.10.20.4-0.6-0.0-0.2-0.6
Conditioned locomotion3.54.16.91.52.62.51.1
Cocaine response after cond. corrected0.10.10.2-0.1-0.4-0.4-0.1
Cocaine response after cond. not corrected0.50.60.9-0.6-0.9-1.0-0.5
Cocaine response before conditioning0.70.90.9-1.0-0.9-1.0-0.9
Saline control response3.24.35.21.92.32.31.7
Condit. Reinf. active minus inactive responses0.70.91.20.91.01.10.7
Condit. Reinf. active-inactive response ratio2.62.73.11.81.51.61.7
Condit. Reinf. active responses0.10.10.2-0.00.50.5-0.2
Condit. Reinf. inactive responses1.01.21.9-1.3-0.7-0.9-1.4
Condit. Reinf. lever presses0.20.20.4-0.40.50.4-0.6
Condit. Reinf. lever reinforcers received0.10.20.3-0.30.50.4-0.6
Pavlov. Cond. lever latency0.40.51.00.2-1.0-0.90.5
Pavlov. Cond. magazine entry latency2.93.45.2-2.1-1.2-1.5-2.3
Pavlov. Cond. change in total contacts0.81.12.4-1.3-0.2-0.4-1.6
Pavlov. Cond. index score0.71.02.2-1.2-0.2-0.4-1.5
Pavlov. Cond. latency score0.70.92.0-1.2-0.1-0.2-1.4
Pavlov. Cond. lever contacts0.50.71.6-0.11.31.1-0.4
Pavlov. Cond. magazine entry number2.32.84.82.01.01.22.2
Pavlov. Cond. intertrial magazine entries1.72.12.71.41.61.71.2
Pavlov. Cond. lever-magazine prob. diff.1.01.22.7-1.4-0.3-0.5-1.6
Pavlov. Cond. response bias0.40.51.1-0.80.40.2-1.1
Conditioned reinforcement - actives0.10.10.30.10.40.50.0
Conditioned reinforcement - inactives1.51.72.01.41.11.41.3
Conditioned locomotion0.30.30.40.70.30.60.6
Intermittent access intake day 1-15 change0.60.60.70.80.90.80.7
Intermittent access intake escalation0.50.50.70.60.80.80.6
Intermittent access intake escalation 22.12.12.81.71.21.31.6
Intermitt. access day 1 inactive lever presses1.31.41.61.31.11.21.2
Intermitt. access day 15 inactive lever presses1.01.12.00.81.21.40.6
Intermitt. access escalation Index0.80.71.30.51.11.10.3
Intermittent access day 1 total infusions0.30.30.60.40.80.60.4
Intermittent access day 15 total infusions0.60.71.00.71.01.00.6
Intermittent access terminal intake (last 3 days)1.41.51.81.21.31.41.1
Intermittent access total infusions0.50.60.90.60.90.90.5
Intermittent access day 1 locomotion0.30.40.60.50.70.80.4
Intermittent access day 15 total locomotion0.70.70.91.00.60.81.0
Intermittent access total locomotion0.60.60.80.80.70.90.8
Intermittent access standard deviation0.20.30.50.2-0.7-0.60.4
Cocaine induced anxiety4.85.57.52.71.72.22.6
Post-drug Anxiety0.40.50.80.90.30.60.8
Baseline Anxiety7.88.28.9-3.0-2.7-3.0-2.8
Lifetime Intake0.20.20.20.40.50.50.3
Incentive Sensitization - Responses0.10.10.20.40.30.30.4
Incentive Sensitization - Breakpoint0.10.10.20.40.20.30.4
Progressive ratio test 1 active lever presses1.21.21.90.91.41.30.7
Progressive ratio test 1 breakpoint1.51.52.51.01.61.40.8
Progressive ratio test 1 inactive lever presses2.62.74.11.32.02.01.1
Progressive ratio test 2 active lever presses0.50.50.60.80.60.70.7
Progressive ratio test 2 breakpoint0.50.50.80.70.80.90.6
Progressive ratio test 2 inactive lever presses0.50.60.80.90.60.80.9
Total sessions with >9 infusions0.10.10.2-0.4-0.4-0.4-0.3
Short access day 1 total inactive lever presses0.00.00.0-0.10.10.2-0.1
Short access day 10 total inactive lever presses3.43.74.31.92.02.11.8
Short access day 1 total infusions1.31.41.9-1.0-1.4-1.3-0.9
Short access day 10 total infusions0.70.70.80.90.80.80.9
Short access total infusions0.00.00.00.00.1-0.00.0
Short access day 1 locomotion0.20.20.60.0-0.8-0.50.2
Short access day 10 total locomotion0.20.20.40.5-0.5-0.30.6
Short access total locomotion0.20.20.40.1-0.7-0.60.3
Compulsive drug intake0.30.30.60.30.80.70.1
One hour access (0.3 mA shock)1.21.42.30.91.51.40.7
One hour access (shock baseline)0.20.30.40.50.60.70.4
Number of responses in last shaping day1.31.31.81.20.91.31.1
Context. condit. distance diff. score0.50.71.0-0.51.00.8-0.9
Locomotion velocity, session 11.92.14.0-0.8-2.0-1.9-0.4
Locomotion distance, session 13.34.35.0-2.2-1.8-2.0-2.2
Locomotion velocity, session 24.35.07.4-1.9-2.7-2.6-1.5
Locomotion distance, session 20.71.01.6-1.2-0.6-0.8-1.3
Locomotion velocity, session 31.41.62.8-0.9-1.7-1.6-0.7
Locomotion distance, session 33.33.64.5-1.8-2.1-2.1-1.6
Stereotopy head waving bouts, day 30.40.50.9-0.3-1.0-0.9-0.1
Stereotopy head waving duration, day 30.20.30.5-0.3-0.7-0.6-0.2
Locomotion velocity, session 70.80.91.0-1.0-0.9-0.9-1.0
Locomotion distance, session 74.35.57.7-2.7-1.7-2.0-2.8
Stereotopy head waving bouts, day 70.10.10.20.30.50.50.2
Stereotopy head waving duration, day 70.60.70.80.90.70.80.9
Locomotion velocity, session 81.11.32.3-1.4-0.6-0.7-1.5
Locomotion distance, session 81.01.53.4-1.50.60.3-1.9
Degree of sensitization distance0.40.40.8-0.00.90.8-0.2
Degree of sensitization stereotypy0.40.40.70.40.80.80.3
Condit. Reinf. active minus inactive responses2.02.33.21.31.81.81.1
Condit. Reinf. active-inactive response ratio0.80.91.40.81.21.10.6
Condit. Reinf. active responses3.74.66.31.82.52.51.5
Condit. Reinf. inactive responses0.91.11.50.91.21.20.8
Incentive salience index mean1.72.12.91.21.71.71.0
Condit. Reinf. lever presses0.00.00.1-0.20.20.2-0.2
Time in familiar zone, hab. session 10.00.00.1-0.1-0.3-0.2-0.1
Time in novel zone, hab. session 10.00.00.0-0.00.20.1-0.1
Total zone transitions, hab. session 10.60.91.3-1.1-0.6-0.7-1.2
Total locomotion distance, hab. session 10.20.20.4-0.40.50.3-0.6
Locomotion velocity, hab. session 10.20.20.3-0.40.60.4-0.6
Time in familiar zone, hab. session 20.50.50.8-0.8-0.4-0.5-0.9
Time in novel zone, hab. session 20.00.00.0-0.0-0.2-0.20.1
Total zone transitions, hab. session 21.01.32.8-1.5-0.3-0.5-1.7
Total locomotion distance, hab. session 20.40.60.8-0.60.90.7-0.8
Locomotion velocity, hab. session 20.50.71.4-0.31.21.0-0.6
Novel to familiar place preference ratio2.93.13.61.91.61.71.8
Novelty place preference2.93.03.61.91.51.71.8
Time in novel zone, NPP test2.22.32.71.61.41.51.5
Total zone transitions, NPP test1.42.04.0-1.8-0.4-0.7-2.0
Total locomotion distance, NPP test0.71.02.3-1.20.50.2-1.5
Locomotion velocity, NPP test0.50.71.2-0.80.70.5-1.1
Pavlov. Cond. lever latency2.53.25.9-2.2-0.8-1.1-2.4
Pavlov. Cond. magazine entry latency3.34.26.02.41.51.72.4
Pavlov. Cond. change in total contacts0.70.71.51.10.20.41.2
Pavlov. Cond. index score4.65.97.72.71.92.22.8
Pavlov. Cond. latency score4.15.37.82.71.61.92.8
Pavlov. Cond. lever contacts1.72.03.21.70.81.11.8
Pavlov. Cond. magazine entry number3.24.06.4-2.4-1.2-1.5-2.5
Pavlov. Cond. intertrial magazine entries0.20.30.4-0.20.70.5-0.5
Pavlov. Cond. lever-magazine prob. diff.4.75.97.52.72.02.22.7
Pavlov. Cond. response bias3.34.06.32.41.31.52.5
Bone: apparent density0.10.20.50.10.70.60.0
Bone surface0.40.70.70.80.80.80.8
Bone volume0.30.50.70.50.80.80.5
Bone: connectivity density0.10.10.2-0.40.10.0-0.5
Bone: cortical apparent density2.63.44.4-1.7-2.1-2.1-1.5
Bone: cortical area7.511.412.53.43.43.53.2
Bone: cortical porosity2.12.24.31.90.50.82.1
Bone: cortical porosity2.02.23.71.80.81.01.9
Bone: cortical thickness6.610.912.43.53.13.23.4
Bone: cortical thickness2.02.32.41.61.51.51.5
Bone: cortical tissue density3.03.95.1-1.8-2.2-2.2-1.6
Bone: elastic displacement1.82.02.21.51.31.41.4
Bone: elastic work9.011.714.03.73.13.23.7
Bone: endosteal estimation0.10.30.7-0.70.30.1-0.8
Bone: endosteal perimeter0.91.82.01.31.41.41.2
Bone: final force6.09.911.73.03.43.42.7
Bone: final moment7.011.613.43.33.63.73.0
Bone: marrow area0.10.30.7-0.70.20.1-0.8
Bone: maximum diameter2.13.94.32.02.02.11.9
Bone: maximum force5.810.112.13.03.53.52.7
Bone: maximum moment6.711.713.73.33.73.73.0
Bone: minimum diameter4.07.38.12.72.82.82.5
Bone: periosteal estimation2.14.35.71.82.42.41.6
Bone: periosteal perimeter4.87.99.63.12.42.63.1
Bone: post-yield work0.10.20.4-0.50.0-0.1-0.6
Bone: stiffness0.71.11.50.91.21.20.8
Bone: tissue strength1.21.12.00.71.41.30.5
Bone: trabecular number0.00.00.00.00.10.10.0
Bone: trabecular spacing0.60.81.7-0.90.70.5-1.3
Bone: trabecular thickness1.01.32.51.40.40.61.6
Bone: trabecular tissue density0.81.11.5-1.0-1.2-1.2-0.8
Breakpoint value in progressive ratio session0.30.30.50.70.40.50.7
Distance traveled before self-admin1.41.51.81.31.01.21.3
Distance traveled after self-admin0.40.40.90.11.00.8-0.2
Delta time in closed arm before/after self-admin0.10.10.20.4-0.30.10.4
Delta time in open arm before/after self-admin0.20.20.3-0.40.30.2-0.6
Diff in mean of infusions in LGA sessions0.10.10.2-0.2-0.4-0.4-0.1
Extinction: sum of active levers before priming1.01.01.5-0.9-1.1-1.2-0.8
Active lever presses in extinction session 60.20.20.50.2-0.7-0.40.2
Delta distance traveled before/after self-admin0.80.91.8-1.2-0.2-0.4-1.3
Delta ambulatory time before/after self-admin1.61.72.6-1.5-1.0-1.0-1.6
Time in closed arm before self-admin0.10.10.4-0.3-0.3-0.6-0.1
Time in closed arm after self-admin0.60.71.30.2-1.1-1.10.5
Time in open arm before self-admin0.10.10.10.2-0.40.00.2
Time in open arm after self-admin0.20.20.4-0.6-0.0-0.0-0.7
Sum of active levers in priming session hrs 5-60.20.20.40.40.60.40.3
Time to tail flick, vehicle, before self-admin0.10.10.10.10.40.30.1
Time to tail flick, vehicle, after self-admin1.81.92.7-1.2-1.6-1.6-1.0
Time to tail flick, test, before self-admin0.10.10.20.4-0.10.10.5
Time to tail flick, test, after self-admin0.20.20.6-0.0-0.8-0.5-0.0
Delta time to tail flick, vehicle, before/after SA0.40.40.5-0.7-0.6-0.5-0.7
Delta time to tail flick, test, before/after SA0.40.40.7-0.4-0.8-0.8-0.3
Ambulatory time before self-admin2.62.82.91.71.71.71.6
Ambulatory time after self-admin0.30.30.60.20.80.70.0
Total heroin consumption0.10.20.30.6-0.10.10.6
Area under the delay curve1.92.02.5-1.4-1.6-1.4-1.3
Delay disc. indifference point, 0s delay0.00.00.0-0.0-0.2-0.0-0.0
Delay disc. indifference point, 16s delay2.82.94.2-2.0-1.3-1.3-2.0
Delay disc. indifference point, 2s delay0.30.40.8-0.4-0.9-0.6-0.3
Delay disc. indifference point, 24s delay4.74.56.9-1.8-2.6-2.4-1.5
Delay disc. indifference point, 4s delay0.40.40.7-0.6-0.8-0.7-0.4
Delay disc. indifference point, 8s delay0.80.81.5-0.6-1.2-1.1-0.4
Delay discount exponential model param2.62.73.61.51.91.81.3
Delay discount hyperbolic model param2.42.63.51.51.91.71.3
Fecal boli incidents, locomotor time 10.60.70.7-0.8-0.8-0.9-0.8
Change in fecal boli incidents, locomotor task1.61.52.8-0.8-1.5-1.7-0.5
Time >=10cm from walls, locomotor time 10.40.40.9-0.31.00.6-0.4
Bouts of movement, locomotor time 11.82.02.4-1.4-1.5-1.5-1.2
Total resting periods, locomotor time 12.02.23.0-1.3-1.7-1.7-1.1
Rest time, locomotor task time 10.20.20.40.1-0.6-0.50.3
Distance moved, locomotor task time 10.40.50.90.40.80.90.3
Vertical activity count, locomotor time 10.90.91.90.41.31.40.1
Time >=10cm from walls, locomotor time 20.00.00.10.20.20.10.3
Bouts of movement, locomotor time 21.61.71.9-1.4-1.2-1.3-1.3
Total resting periods, locomotor time 21.11.21.5-1.2-0.9-1.0-1.2
Rest time, locomotor task time 20.00.00.1-0.1-0.2-0.20.0
Distance moved, locomotor task time 20.00.00.00.20.00.20.2
Vertical activity count, locomotor time 20.10.10.2-0.20.50.4-0.4
Weight adjusted by age3.03.33.61.91.81.91.7
Seeking ratio, delayed vs. immediate footshock1.51.72.41.21.51.41.1
Locomotion in novel chamber0.20.30.5-0.6-0.3-0.3-0.7
Locomotion in novel chamber post-restriction2.12.53.41.41.81.61.4
Progressive ratio0.50.51.0-0.6-1.0-0.7-0.6
Food seeking constrained by brief footshock0.10.10.3-0.1-0.6-0.4-0.0
Seeking ratio, punishment vs. effort0.10.20.40.20.60.40.1
Run reversals in cocaine runway, females1.61.62.8-1.6-0.4-0.8-1.7
Run reversals in cocaine runway, males1.81.82.91.60.81.01.7
Latency to leave start box in cocaine runway0.40.40.6-0.8-0.4-0.6-0.7
Latency to leave start box in cocaine runway, F0.50.50.9-0.9-0.4-0.5-1.0
Latency to leave start box in cocaine runway, M0.00.00.10.20.20.10.2
Cd content in liver2.62.83.2-1.8-1.5-1.6-1.8
Co content in liver0.10.20.3-0.5-0.3-0.3-0.5
Cu content in liver0.81.01.91.30.30.51.4
Fe content in liver1.11.31.4-1.1-1.1-1.2-1.1
K content in liver2.12.13.01.11.71.71.0
Mg content in liver0.30.30.4-0.30.60.5-0.5
Mn content in liver0.40.50.60.80.60.70.8
Na content in liver0.10.10.10.30.10.20.4
Rb content in liver0.50.71.40.31.21.10.0
Se content in liver0.20.30.50.40.70.70.3
Sr content in liver0.40.30.60.5-0.5-0.40.8
Zn content in liver0.20.20.50.5-0.20.00.7