ENSRNOG00000064992

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000064992 0.07 0.05 7.4e-06 0.06 0.06 0.06 0.06 6.0e-06 3.5e-06 7.4e-06 6.4e-06
2 Liver gene expression ENSRNOG00000064992 0.03 0.02 4.9e-03 0.02 0.01 0 0.01 4.1e-03 1.0e-02 8.3e-02 9.8e-03
3 PL gene expression ENSRNOG00000064992 0.08 0.07 1.5e-04 0.04 0.02 0.04 -0 3.8e-04 2.1e-02 4.8e-04 6.7e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.00.00.0-0.20.10.0
BMI without tail0.61.31.90.51.41.3
Body weight0.31.11.70.31.31.2
Epididymis fat weight0.10.30.8-0.9-0.2-0.3
Glucose0.00.00.00.10.10.1
Heart weight1.42.02.11.41.41.4
Left kidney weight1.23.54.51.52.12.0
Right kidney weight0.72.12.91.11.71.4
Tail length2.47.49.71.83.13.0
Length with tail0.82.83.90.82.01.9
Length without tail0.30.60.6-0.7-0.8-0.7
Liver weight, left0.20.40.9-1.0-0.4-0.4
Liver weight, right0.71.12.5-1.6-0.6-0.6
Parametrial fat weight0.61.21.8-1.3-1.0-1.0
Retroperitoneal fat weight1.65.410.6-3.3-1.7-1.7
Intraocular pressure0.10.20.30.60.20.3
Extensor digitorum longus weight0.00.10.2-0.50.10.1
Soleus weight0.10.20.2-0.50.40.4
Tibialis anterior weight0.10.40.50.40.70.7
Tibia length1.54.36.02.41.91.8
Number of licking bursts5.16.17.6-2.8-2.3-2.3
Food consumed during 24 hour testing period3.94.75.82.42.02.1
Times rat made contact with spout0.10.10.3-0.6-0.2-0.2
Mean time between licks in bursts6.69.310.52.63.23.2
Mean num. licks in bursts4.55.46.52.52.22.2
Std. dev. time between licks in bursts1.92.33.01.01.71.7
Water consumed over 24 hours0.80.91.0-0.9-1.0-0.9
Indifference point 0 sec5.18.29.23.02.82.7
Indifference point AUC0.10.20.30.10.40.6
Indifference point function ln k0.81.12.11.40.80.7
Indifference point function log k0.81.12.11.40.80.7
Delay discounting total patch changes 0 sec4.16.77.32.72.62.5
Delay discounting total patch changes 12 sec1.82.52.81.31.71.7
Delay discounting total patch changes 18 sec3.04.04.61.82.02.1
Delay discounting total patch changes 24 sec1.41.72.21.01.51.4
Delay discounting total patch changes 6 sec0.81.21.41.21.11.0
Delay discounting time to switch 0 sec4.46.76.9-2.6-2.6-2.6
Delay discounting water rate 0 sec3.65.76.52.52.42.3
Delay discounting water rate 12 sec1.92.93.92.01.61.5
Delay discounting water rate 18 sec1.41.92.11.31.51.3
Delay discounting water rate 24 sec0.71.01.91.40.80.7
Delay discounting water rate 6 sec0.81.21.61.21.01.0
Locomotor activity0.71.21.61.31.10.9
Locomotor testing distance2.64.34.52.12.12.0
Locomotor testing rearing0.91.41.81.11.31.2
Light reinforcement 12.85.25.5-2.2-2.3-2.3
Light reinforcement 20.40.60.9-0.4-0.9-0.8
Reaction time number correct0.10.20.20.4-0.4-0.5
Reaction time mean minus median0.81.11.21.01.01.1
Reaction time mean minus median AUC1.11.41.71.31.11.1
Reaction time num false alarms1.92.73.1-1.8-1.5-1.6
Reaction time num false alarms AUC1.11.51.6-1.3-1.2-1.2
Reaction time trials correct on left0.10.20.20.4-0.4-0.5
Reaction time trials on left0.10.20.30.3-0.4-0.5
Reaction time mean0.70.91.3-1.1-0.9-0.8
Reaction time mean AUC1.21.61.9-1.4-1.3-1.2
Median of all reaction times1.52.12.5-1.6-1.4-1.3
Reaction time omissions0.20.30.4-0.6-0.5-0.5
Reaction time false alarm rate1.01.52.2-1.5-1.0-1.0
Reaction time premature initiation rate2.12.83.61.21.91.9
Reaction time premature initiations1.52.22.41.41.51.5
Std. dev. reaction times0.30.40.60.30.70.8
Reaction time trials completed0.10.20.30.3-0.4-0.5
Reaction time trials AUC0.10.10.20.4-0.3-0.4
Social response proportion0.30.30.5-0.7-0.4-0.4
Social responses0.10.20.5-0.7-0.1-0.1
Social time3.95.15.7-2.0-2.3-2.4
Conditioned locomotion0.10.10.2-0.2-0.4-0.4
Cocaine response after cond. corrected1.82.02.7-1.6-1.3-1.3
Cocaine response after cond. not corrected0.50.60.8-0.9-0.7-0.7
Cocaine response before conditioning1.41.72.51.61.21.2
Saline control response2.63.53.81.71.91.9
Condit. Reinf. active minus inactive responses9.912.213.13.33.63.6
Condit. Reinf. active-inactive response ratio2.32.42.51.51.61.6
Condit. Reinf. active responses12.617.619.03.84.34.4
Condit. Reinf. inactive responses7.28.99.82.73.13.1
Condit. Reinf. lever presses22.530.931.95.45.65.6
Condit. Reinf. lever reinforcers received14.119.921.24.24.64.6
Pavlov. Cond. lever latency22.631.031.3-5.5-5.6-5.6
Pavlov. Cond. magazine entry latency4.75.46.22.52.32.2
Pavlov. Cond. change in total contacts17.023.724.14.94.84.9
Pavlov. Cond. index score17.322.622.94.84.74.7
Pavlov. Cond. latency score15.419.520.04.54.44.4
Pavlov. Cond. lever contacts23.432.632.95.75.75.7
Pavlov. Cond. magazine entry number8.510.511.8-3.4-3.1-3.1
Pavlov. Cond. intertrial magazine entries0.10.10.2-0.10.40.5
Pavlov. Cond. lever-magazine prob. diff.16.421.221.34.64.64.6
Pavlov. Cond. response bias23.532.432.65.75.75.7
Conditioned reinforcement - actives2.92.93.31.81.61.6
Conditioned reinforcement - inactives0.10.20.4-0.6-0.2-0.2
Conditioned locomotion2.12.53.11.81.51.5
Intermittent access intake day 1-15 change0.70.71.01.00.80.8
Intermittent access intake escalation0.90.91.21.10.90.8
Intermittent access intake escalation 20.40.40.50.60.70.5
Intermitt. access day 1 inactive lever presses0.30.30.6-0.8-0.5-0.3
Intermitt. access day 15 inactive lever presses0.00.00.10.20.10.3
Intermitt. access escalation Index0.30.30.30.60.60.4
Intermittent access day 1 total infusions1.41.62.01.11.31.4
Intermittent access day 15 total infusions1.82.02.11.51.41.5
Intermittent access terminal intake (last 3 days)1.92.02.21.31.51.5
Intermittent access total infusions1.41.52.01.01.21.4
Intermittent access day 1 locomotion0.00.00.10.20.20.3
Intermittent access day 15 total locomotion1.41.51.71.31.21.1
Intermittent access total locomotion0.80.91.00.90.91.0
Intermittent access standard deviation0.20.20.30.30.50.6
Cocaine induced anxiety2.63.03.4-1.7-1.6-1.8
Post-drug Anxiety1.01.11.3-1.1-0.9-1.2
Baseline Anxiety1.41.51.81.21.21.3
Lifetime Intake1.61.82.31.21.31.5
Incentive Sensitization - Responses3.43.43.71.71.91.9
Incentive Sensitization - Breakpoint3.13.13.31.71.81.8
Progressive ratio test 1 active lever presses0.20.20.3-0.5-0.4-0.3
Progressive ratio test 1 breakpoint0.10.10.2-0.5-0.2-0.2
Progressive ratio test 1 inactive lever presses0.30.30.50.40.50.7
Progressive ratio test 2 active lever presses1.41.51.71.11.21.3
Progressive ratio test 2 breakpoint1.41.61.91.11.31.4
Progressive ratio test 2 inactive lever presses0.81.01.11.00.91.1
Total sessions with >9 infusions2.52.73.11.81.61.6
Short access day 1 total inactive lever presses0.20.30.4-0.5-0.6-0.4
Short access day 10 total inactive lever presses0.10.10.2-0.3-0.3-0.4
Short access day 1 total infusions3.13.23.51.71.91.8
Short access day 10 total infusions2.12.32.71.21.71.7
Short access total infusions1.21.41.81.01.21.3
Short access day 1 locomotion1.31.42.21.50.91.1
Short access day 10 total locomotion0.60.70.90.70.90.8
Short access total locomotion0.20.20.20.40.40.4
Compulsive drug intake0.20.20.30.1-0.4-0.5
One hour access (0.3 mA shock)2.93.43.81.71.92.0
One hour access (shock baseline)2.42.83.41.41.71.8
Number of responses in last shaping day0.40.40.60.50.70.7
Context. condit. distance diff. score2.32.73.51.91.51.5
Locomotion velocity, session 10.30.30.4-0.3-0.7-0.7
Locomotion distance, session 10.60.81.31.10.80.8
Locomotion velocity, session 20.10.10.10.30.30.3
Locomotion distance, session 20.40.60.80.90.70.7
Locomotion velocity, session 30.40.50.90.90.60.6
Locomotion distance, session 30.91.01.61.30.80.8
Stereotopy head waving bouts, day 30.20.20.4-0.6-0.4-0.4
Stereotopy head waving duration, day 30.00.00.10.30.10.1
Locomotion velocity, session 70.30.40.4-0.5-0.6-0.6
Locomotion distance, session 70.10.20.2-0.4-0.4-0.4
Stereotopy head waving bouts, day 72.52.93.51.91.61.6
Stereotopy head waving duration, day 73.44.24.72.22.02.0
Locomotion velocity, session 80.80.91.11.10.90.9
Locomotion distance, session 82.43.54.22.01.81.8
Degree of sensitization distance0.30.30.8-0.9-0.2-0.2
Degree of sensitization stereotypy5.96.47.72.82.42.4
Condit. Reinf. active minus inactive responses0.30.30.40.40.60.6
Condit. Reinf. active-inactive response ratio0.80.81.00.71.01.0
Condit. Reinf. active responses0.00.00.00.10.20.2
Condit. Reinf. inactive responses0.10.10.1-0.2-0.3-0.3
Incentive salience index mean0.40.40.50.50.70.7
Condit. Reinf. lever presses0.20.20.20.50.50.5
Time in familiar zone, hab. session 10.00.00.0-0.10.10.1
Time in novel zone, hab. session 10.30.30.3-0.5-0.5-0.5
Total zone transitions, hab. session 10.00.00.10.2-0.2-0.2
Total locomotion distance, hab. session 10.30.50.9-1.0-0.5-0.5
Locomotion velocity, hab. session 10.10.20.5-0.7-0.3-0.3
Time in familiar zone, hab. session 21.92.02.21.31.51.5
Time in novel zone, hab. session 20.50.50.6-0.6-0.8-0.8
Total zone transitions, hab. session 21.21.52.31.51.11.1
Total locomotion distance, hab. session 20.10.10.2-0.00.50.5
Locomotion velocity, hab. session 20.10.10.1-0.20.40.4
Novel to familiar place preference ratio0.10.10.10.30.20.2
Novelty place preference0.10.10.10.30.20.2
Time in novel zone, NPP test0.20.20.20.50.40.4
Total zone transitions, NPP test0.10.20.30.60.30.3
Total locomotion distance, NPP test0.10.20.5-0.7-0.2-0.2
Locomotion velocity, NPP test0.40.51.1-1.0-0.5-0.5
Pavlov. Cond. lever latency1.72.22.2-1.5-1.5-1.5
Pavlov. Cond. magazine entry latency3.95.15.12.22.32.3
Pavlov. Cond. change in total contacts2.02.12.11.41.51.5
Pavlov. Cond. index score4.15.25.32.22.32.3
Pavlov. Cond. latency score3.95.05.12.22.32.3
Pavlov. Cond. lever contacts1.92.22.31.41.51.5
Pavlov. Cond. magazine entry number4.45.55.6-2.4-2.3-2.3
Pavlov. Cond. intertrial magazine entries1.41.71.7-1.3-1.3-1.3
Pavlov. Cond. lever-magazine prob. diff.3.24.14.22.02.02.0
Pavlov. Cond. response bias1.72.12.21.41.51.5
Bone: apparent density0.10.10.2-0.2-0.4-0.4
Bone surface0.91.61.61.31.31.3
Bone volume0.50.90.91.00.90.9
Bone: connectivity density0.00.00.00.2-0.2-0.1
Bone: cortical apparent density1.82.32.9-1.7-1.4-1.5
Bone: cortical area0.50.70.80.70.90.9
Bone: cortical porosity0.70.81.21.10.70.7
Bone: cortical porosity0.50.61.01.00.60.6
Bone: cortical thickness0.20.30.3-0.5-0.5-0.6
Bone: cortical thickness0.10.10.20.50.20.2
Bone: cortical tissue density1.82.32.9-1.7-1.4-1.5
Bone: elastic displacement3.13.54.0-1.7-1.9-2.0
Bone: elastic work2.83.64.2-1.6-2.0-2.0
Bone: endosteal estimation1.73.74.41.52.12.1
Bone: endosteal perimeter2.34.85.51.92.32.4
Bone: final force0.00.00.0-0.2-0.1-0.2
Bone: final moment0.00.00.00.10.20.1
Bone: marrow area1.43.03.61.31.91.9
Bone: maximum diameter2.34.24.61.92.22.1
Bone: maximum force0.00.00.00.20.20.1
Bone: maximum moment0.10.20.20.40.50.4
Bone: minimum diameter0.61.11.50.51.21.2
Bone: periosteal estimation1.53.13.61.51.91.9
Bone: periosteal perimeter1.83.03.41.61.81.8
Bone: post-yield work0.20.30.30.50.50.5
Bone: stiffness0.10.20.4-0.6-0.2-0.3
Bone: tissue strength0.40.40.6-0.3-0.8-0.8
Bone: trabecular number1.11.72.0-1.1-1.4-1.4
Bone: trabecular spacing0.91.21.31.11.11.0
Bone: trabecular thickness0.20.30.3-0.5-0.5-0.5
Bone: trabecular tissue density0.81.11.9-1.4-0.7-0.9
Breakpoint value in progressive ratio session0.30.30.4-0.4-0.6-0.6
Distance traveled before self-admin1.11.21.4-1.1-0.9-1.2
Distance traveled after self-admin0.70.81.0-0.8-1.0-0.8
Delta time in closed arm before/after self-admin0.60.61.3-1.1-0.4-0.5
Delta time in open arm before/after self-admin4.24.04.52.01.92.1
Diff in mean of infusions in LGA sessions3.74.24.7-2.2-1.9-2.1
Extinction: sum of active levers before priming0.10.10.1-0.3-0.2-0.2
Active lever presses in extinction session 61.71.63.11.81.00.9
Delta distance traveled before/after self-admin0.70.81.10.90.71.0
Delta ambulatory time before/after self-admin0.60.70.90.90.51.0
Time in closed arm before self-admin1.01.22.41.60.80.7
Time in closed arm after self-admin1.01.01.5-0.8-1.0-1.2
Time in open arm before self-admin4.34.55.3-2.3-2.0-2.1
Time in open arm after self-admin0.50.50.90.40.80.9
Sum of active levers in priming session hrs 5-60.10.10.2-0.1-0.4-0.4
Time to tail flick, vehicle, before self-admin0.00.00.0-0.1-0.2-0.2
Time to tail flick, vehicle, after self-admin2.02.22.81.71.21.5
Time to tail flick, test, before self-admin0.50.50.80.40.80.9
Time to tail flick, test, after self-admin0.60.60.90.41.00.9
Delta time to tail flick, vehicle, before/after SA1.41.31.71.31.01.2
Delta time to tail flick, test, before/after SA0.30.30.3-0.5-0.5-0.5
Ambulatory time before self-admin1.31.31.6-1.2-1.0-1.2
Ambulatory time after self-admin0.40.40.7-0.5-0.8-0.6
Total heroin consumption0.20.20.40.60.30.3
Area under the delay curve0.00.00.0-0.1-0.0-0.1
Delay disc. indifference point, 0s delay1.01.11.31.01.11.0
Delay disc. indifference point, 16s delay0.10.10.2-0.2-0.2-0.4
Delay disc. indifference point, 2s delay1.01.11.30.91.11.1
Delay disc. indifference point, 24s delay1.11.11.2-1.1-1.0-1.1
Delay disc. indifference point, 4s delay1.11.21.60.81.31.1
Delay disc. indifference point, 8s delay0.00.00.10.20.1-0.0
Delay discount exponential model param0.00.00.00.20.10.2
Delay discount hyperbolic model param0.00.00.0-0.1-0.2-0.1
Fecal boli incidents, locomotor time 10.70.71.31.10.60.7
Change in fecal boli incidents, locomotor task1.21.21.7-1.3-0.9-1.0
Time >=10cm from walls, locomotor time 11.61.62.21.51.11.2
Bouts of movement, locomotor time 10.20.20.30.50.40.4
Total resting periods, locomotor time 10.00.00.10.30.00.0
Rest time, locomotor task time 10.20.20.3-0.2-0.5-0.6
Distance moved, locomotor task time 10.30.40.50.30.70.7
Vertical activity count, locomotor time 10.40.40.60.50.80.7
Time >=10cm from walls, locomotor time 21.81.92.31.31.31.5
Bouts of movement, locomotor time 20.60.71.10.50.81.1
Total resting periods, locomotor time 20.20.20.40.10.50.6
Rest time, locomotor task time 24.45.15.6-2.2-2.2-2.4
Distance moved, locomotor task time 24.65.35.62.22.42.3
Vertical activity count, locomotor time 21.82.02.41.31.51.5
Weight adjusted by age0.70.81.00.71.01.0
Seeking ratio, delayed vs. immediate footshock2.12.52.8-1.3-1.7-1.6
Locomotion in novel chamber0.50.71.21.10.70.6
Locomotion in novel chamber post-restriction1.92.23.11.81.31.4
Progressive ratio0.00.00.10.3-0.10.0
Food seeking constrained by brief footshock1.51.82.11.21.51.4
Seeking ratio, punishment vs. effort1.01.21.80.71.31.2
Run reversals in cocaine runway, females0.20.20.6-0.80.10.2
Run reversals in cocaine runway, males0.10.10.1-0.3-0.3-0.3
Latency to leave start box in cocaine runway2.72.93.8-2.0-1.6-1.6
Latency to leave start box in cocaine runway, F1.61.82.8-1.7-1.1-1.1
Latency to leave start box in cocaine runway, M0.70.70.9-0.7-0.9-0.9
Cd content in liver0.40.40.7-0.8-0.5-0.5
Co content in liver1.92.32.51.31.61.6
Cu content in liver1.21.41.70.91.31.3
Fe content in liver0.00.00.1-0.2-0.1-0.1
K content in liver0.10.10.2-0.4-0.3-0.3
Mg content in liver0.20.20.20.40.40.4
Mn content in liver2.02.32.6-1.3-1.6-1.6
Na content in liver0.30.30.40.60.50.5
Rb content in liver0.91.21.21.11.11.1
Se content in liver4.55.55.6-2.3-2.4-2.4
Sr content in liver0.10.10.10.0-0.3-0.3
Zn content in liver6.26.87.02.72.62.6