ENSRNOG00000064807

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000064807 0.09 0.05 1.9e-05 0.02 0.05 0.05 0.02 2.3e-03 3.0e-05 1.2e-05 2.2e-03
2 IL gene expression ENSRNOG00000064807 0.24 0.15 4.1e-03 0.02 0.08 0.03 0.01 9.3e-02 5.8e-03 6.7e-02 1.7e-01
3 NAcc gene expression ENSRNOG00000064807 0.07 0.04 8.3e-04 0.07 0.05 0.06 0.06 1.2e-05 2.4e-04 2.2e-05 4.7e-05
4 PL gene expression ENSRNOG00000064807 0.12 0.07 1.4e-04 0.06 0.06 0.06 0.06 5.1e-05 2.2e-05 1.9e-05 1.3e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.20.50.90.70.10.80.9
BMI without tail0.40.71.6-1.1-1.3-0.3-0.4
Body weight2.29.514.2-3.8-2.7-2.7-3.0
Epididymis fat weight1.02.43.6-1.9-0.6-1.6-1.7
Glucose0.10.20.50.20.7-0.30.2
Heart weight0.10.20.4-0.20.5-0.7-0.3
Left kidney weight2.26.29.9-2.7-0.5-3.1-2.7
Right kidney weight3.49.614.9-3.3-0.2-3.9-3.5
Tail length4.614.021.7-4.7-3.5-3.2-3.5
Length with tail7.126.237.5-6.1-4.0-4.7-5.4
Length without tail3.47.310.2-3.1-1.7-2.6-3.2
Liver weight, left2.74.36.3-2.5-1.4-2.3-2.0
Liver weight, right3.05.07.5-2.7-1.1-2.4-2.3
Parametrial fat weight0.91.83.5-1.9-0.9-1.1-1.3
Retroperitoneal fat weight0.10.40.7-0.8-0.5-0.6-0.7
Intraocular pressure0.30.50.7-0.7-0.6-0.8-0.6
Extensor digitorum longus weight0.10.61.2-1.1-0.8-0.3-0.6
Soleus weight0.61.82.60.8-1.21.61.6
Tibialis anterior weight0.20.92.2-1.1-1.50.1-0.2
Tibia length0.92.43.4-1.8-1.0-1.4-1.8
Number of licking bursts2.83.35.2-0.91.5-2.2-2.3
Food consumed during 24 hour testing period1.11.42.4-1.00.4-1.4-1.5
Times rat made contact with spout1.01.11.6-1.3-1.2-0.6-1.1
Mean time between licks in bursts1.11.53.51.31.90.20.8
Mean num. licks in bursts2.22.63.90.3-2.01.91.7
Std. dev. time between licks in bursts1.51.85.41.32.3-0.00.5
Water consumed over 24 hours0.80.91.8-1.0-0.1-0.9-1.4
Indifference point 0 sec2.23.55.4-1.9-0.4-2.3-2.3
Indifference point AUC2.02.43.6-1.9-0.9-1.6-1.6
Indifference point function ln k0.50.81.20.90.31.11.0
Indifference point function log k0.50.81.20.90.31.11.0
Delay discounting total patch changes 0 sec2.13.45.0-1.9-0.5-2.2-2.2
Delay discounting total patch changes 12 sec1.11.52.6-1.1-0.3-1.4-1.6
Delay discounting total patch changes 18 sec1.62.12.9-1.5-0.8-1.6-1.7
Delay discounting total patch changes 24 sec4.45.57.6-2.6-0.7-2.7-2.8
Delay discounting total patch changes 6 sec2.94.56.9-2.2-0.7-2.6-2.5
Delay discounting time to switch 0 sec1.21.84.51.62.10.20.3
Delay discounting water rate 0 sec0.20.20.6-0.6-0.70.30.2
Delay discounting water rate 12 sec0.71.11.6-1.2-0.6-1.0-1.3
Delay discounting water rate 18 sec0.40.61.2-1.1-0.7-0.6-0.4
Delay discounting water rate 24 sec2.02.74.8-2.2-1.8-1.2-1.2
Delay discounting water rate 6 sec0.10.20.40.2-0.10.50.6
Locomotor activity0.30.40.80.20.9-0.2-0.9
Locomotor testing distance0.40.71.60.31.3-0.4-1.0
Locomotor testing rearing0.20.20.8-0.20.2-0.3-0.9
Light reinforcement 10.10.20.6-0.1-0.80.4-0.4
Light reinforcement 21.31.73.01.71.21.30.9
Reaction time number correct0.60.93.1-0.6-1.80.40.3
Reaction time mean minus median0.60.81.21.10.60.61.1
Reaction time mean minus median AUC0.50.60.91.00.40.50.9
Reaction time num false alarms1.11.62.2-1.5-0.8-1.2-1.5
Reaction time num false alarms AUC1.31.82.8-1.5-0.3-1.5-1.7
Reaction time trials correct on left0.60.93.1-0.6-1.80.40.3
Reaction time trials on left0.60.93.0-0.6-1.70.30.3
Reaction time mean1.82.56.11.72.50.31.0
Reaction time mean AUC2.53.47.52.02.70.51.3
Median of all reaction times2.43.37.81.92.80.51.1
Reaction time omissions0.10.10.20.00.4-0.30.3
Reaction time false alarm rate0.91.32.5-1.00.3-1.3-1.6
Reaction time premature initiation rate0.91.21.6-1.3-1.0-1.1-1.2
Reaction time premature initiations1.72.44.3-1.8-2.1-0.9-1.1
Std. dev. reaction times0.50.71.30.91.20.10.8
Reaction time trials completed0.60.93.0-0.6-1.70.30.3
Reaction time trials AUC0.50.72.2-0.5-1.50.30.2
Social response proportion3.03.35.22.00.42.32.0
Social responses0.60.81.70.5-0.71.30.9
Social time0.30.40.7-0.30.6-0.8-0.6
Conditioned locomotion0.10.10.2-0.3-0.40.2-0.2
Cocaine response after cond. corrected0.50.61.4-0.8-1.2-0.2-0.4
Cocaine response after cond. not corrected2.02.23.4-1.8-1.7-1.1-1.2
Cocaine response before conditioning1.62.02.9-1.7-0.6-1.6-1.4
Saline control response0.70.92.6-1.0-1.60.0-0.3
Condit. Reinf. active minus inactive responses0.81.01.6-1.3-0.7-0.8-1.1
Condit. Reinf. active-inactive response ratio0.10.10.2-0.5-0.1-0.2-0.5
Condit. Reinf. active responses2.13.04.7-2.2-2.0-1.0-1.4
Condit. Reinf. inactive responses2.22.74.1-2.0-2.0-1.0-1.3
Condit. Reinf. lever presses0.40.50.6-0.8-0.7-0.5-0.7
Condit. Reinf. lever reinforcers received1.62.33.6-1.9-1.7-1.0-1.3
Pavlov. Cond. lever latency0.30.40.60.70.80.50.3
Pavlov. Cond. magazine entry latency0.50.50.8-0.30.7-0.8-0.9
Pavlov. Cond. change in total contacts0.70.91.6-1.3-0.8-0.9-0.9
Pavlov. Cond. index score0.91.21.7-1.3-0.6-1.2-1.1
Pavlov. Cond. latency score0.81.01.5-1.2-0.7-1.0-1.0
Pavlov. Cond. lever contacts0.30.40.6-0.8-0.7-0.6-0.5
Pavlov. Cond. magazine entry number0.81.01.40.6-1.01.21.2
Pavlov. Cond. intertrial magazine entries1.11.52.0-1.4-1.1-1.0-1.3
Pavlov. Cond. lever-magazine prob. diff.1.11.42.0-1.4-0.4-1.4-1.3
Pavlov. Cond. response bias0.81.11.6-1.1-0.1-1.3-1.3
Conditioned reinforcement - actives1.91.93.9-1.7-2.0-0.5-0.7
Conditioned reinforcement - inactives1.11.33.8-0.5-1.90.90.5
Conditioned locomotion0.70.81.70.5-0.91.30.8
Intermittent access intake day 1-15 change0.30.30.60.2-0.70.50.4
Intermittent access intake escalation0.10.10.30.0-0.50.20.2
Intermittent access intake escalation 20.70.71.00.90.41.00.9
Intermitt. access day 1 inactive lever presses0.80.91.30.7-0.91.01.1
Intermitt. access day 15 inactive lever presses1.71.86.0-0.2-2.40.80.8
Intermitt. access escalation Index0.00.00.00.1-0.1-0.10.0
Intermittent access day 1 total infusions0.60.71.7-1.0-1.3-0.1-0.3
Intermittent access day 15 total infusions1.11.23.1-1.3-1.7-0.3-0.4
Intermittent access terminal intake (last 3 days)0.40.41.2-0.4-1.10.50.3
Intermittent access total infusions0.30.30.8-0.5-0.90.30.1
Intermittent access day 1 locomotion0.40.40.7-0.9-0.8-0.4-0.3
Intermittent access day 15 total locomotion0.80.81.50.5-0.61.21.0
Intermittent access total locomotion0.20.20.50.3-0.20.70.5
Intermittent access standard deviation0.20.30.40.1-0.60.70.5
Cocaine induced anxiety0.00.00.1-0.2-0.30.0-0.0
Post-drug Anxiety0.50.60.80.3-0.80.90.8
Baseline Anxiety0.10.10.20.3-0.30.40.4
Lifetime Intake0.30.30.8-0.6-0.9-0.1-0.1
Incentive Sensitization - Responses0.40.41.0-0.2-1.00.70.4
Incentive Sensitization - Breakpoint0.50.51.2-0.1-1.10.80.5
Progressive ratio test 1 active lever presses0.91.03.1-0.7-1.70.50.2
Progressive ratio test 1 breakpoint0.80.82.5-0.6-1.60.70.3
Progressive ratio test 1 inactive lever presses1.31.44.6-1.0-2.10.3-0.1
Progressive ratio test 2 active lever presses0.70.82.1-0.6-1.40.60.4
Progressive ratio test 2 breakpoint1.01.12.7-0.5-1.71.00.7
Progressive ratio test 2 inactive lever presses1.41.62.40.2-1.61.41.4
Total sessions with >9 infusions0.20.20.3-0.5-0.3-0.6-0.5
Short access day 1 total inactive lever presses1.82.03.31.0-1.31.81.4
Short access day 10 total inactive lever presses0.30.41.0-0.3-1.00.6-0.1
Short access day 1 total infusions0.70.71.3-0.9-0.6-1.1-0.7
Short access day 10 total infusions0.10.10.2-0.20.1-0.4-0.4
Short access total infusions0.70.81.1-1.0-1.0-0.7-0.7
Short access day 1 locomotion0.20.20.3-0.60.3-0.5-0.4
Short access day 10 total locomotion0.40.50.80.90.60.60.5
Short access total locomotion0.10.10.20.00.4-0.2-0.2
Compulsive drug intake1.51.53.7-1.4-1.9-0.4-0.2
One hour access (0.3 mA shock)1.82.15.9-1.5-2.40.10.1
One hour access (shock baseline)0.00.00.0-0.1-0.20.1-0.1
Number of responses in last shaping day0.70.72.2-0.5-1.5-0.10.6
Context. condit. distance diff. score0.50.71.00.1-0.81.01.0
Locomotion velocity, session 11.41.53.21.51.80.50.5
Locomotion distance, session 10.20.30.50.70.70.40.2
Locomotion velocity, session 20.70.81.91.01.40.20.5
Locomotion distance, session 20.60.81.2-0.21.1-1.0-1.0
Locomotion velocity, session 30.10.10.1-0.3-0.1-0.2-0.4
Locomotion distance, session 30.20.20.4-0.6-0.1-0.4-0.6
Stereotopy head waving bouts, day 30.91.11.80.9-0.31.21.3
Stereotopy head waving duration, day 30.70.91.30.6-0.81.11.1
Locomotion velocity, session 70.40.40.8-0.8-0.9-0.2-0.3
Locomotion distance, session 70.40.51.1-0.7-1.1-0.1-0.4
Stereotopy head waving bouts, day 70.00.00.00.10.00.20.1
Stereotopy head waving duration, day 70.00.00.00.1-0.20.20.2
Locomotion velocity, session 80.10.20.30.40.10.50.4
Locomotion distance, session 80.30.40.60.60.40.80.8
Degree of sensitization distance0.10.10.3-0.2-0.6-0.1-0.0
Degree of sensitization stereotypy0.00.00.1-0.2-0.2-0.1-0.2
Condit. Reinf. active minus inactive responses0.60.71.1-0.70.7-1.0-0.9
Condit. Reinf. active-inactive response ratio0.60.61.90.71.40.20.4
Condit. Reinf. active responses1.01.32.0-1.4-0.7-1.2-1.1
Condit. Reinf. inactive responses2.22.64.2-1.9-2.0-1.1-1.2
Incentive salience index mean1.51.92.9-1.30.5-1.7-1.6
Condit. Reinf. lever presses0.81.01.6-0.90.5-1.3-1.2
Time in familiar zone, hab. session 10.10.10.10.2-0.40.30.0
Time in novel zone, hab. session 10.40.41.30.31.1-0.4-0.1
Total zone transitions, hab. session 10.00.00.1-0.1-0.20.1-0.2
Total locomotion distance, hab. session 10.30.41.30.51.10.1-0.3
Locomotion velocity, hab. session 10.40.51.70.61.30.2-0.1
Time in familiar zone, hab. session 20.10.10.30.50.40.30.3
Time in novel zone, hab. session 20.00.00.10.1-0.10.20.3
Total zone transitions, hab. session 20.40.50.9-0.40.5-0.7-1.0
Total locomotion distance, hab. session 20.50.72.30.51.5-0.3-0.5
Locomotion velocity, hab. session 20.60.82.40.41.6-0.4-0.6
Novel to familiar place preference ratio0.60.61.8-0.7-1.3-0.1-0.3
Novelty place preference0.50.51.6-0.5-1.30.2-0.1
Time in novel zone, NPP test0.20.20.6-0.4-0.80.0-0.2
Total zone transitions, NPP test0.71.01.7-0.51.0-1.1-1.3
Total locomotion distance, NPP test0.40.61.90.31.4-0.5-0.5
Locomotion velocity, NPP test0.30.40.8-0.20.9-0.7-0.7
Pavlov. Cond. lever latency0.20.30.40.5-0.40.50.6
Pavlov. Cond. magazine entry latency1.01.33.2-0.01.8-1.1-0.8
Pavlov. Cond. change in total contacts0.90.91.4-0.41.2-1.1-1.0
Pavlov. Cond. index score1.31.62.5-1.00.9-1.6-1.5
Pavlov. Cond. latency score1.41.72.7-1.20.6-1.6-1.6
Pavlov. Cond. lever contacts0.91.11.6-0.90.6-1.3-1.3
Pavlov. Cond. magazine entry number0.70.82.2-0.0-1.50.90.6
Pavlov. Cond. intertrial magazine entries1.41.72.8-1.5-1.7-0.8-1.0
Pavlov. Cond. lever-magazine prob. diff.1.41.72.5-0.81.3-1.6-1.4
Pavlov. Cond. response bias1.01.33.40.11.8-1.0-0.8
Bone: apparent density3.05.017.0-1.7-4.10.3-0.2
Bone surface1.93.411.3-1.5-3.40.1-0.3
Bone volume2.64.413.0-2.0-3.6-0.3-0.7
Bone: connectivity density1.72.79.1-0.5-3.01.10.5
Bone: cortical apparent density0.50.71.11.00.70.70.9
Bone: cortical area3.14.77.1-2.7-2.4-1.6-1.8
Bone: cortical porosity0.30.30.60.70.80.40.2
Bone: cortical porosity0.10.10.10.30.40.2-0.1
Bone: cortical thickness3.45.67.9-2.8-1.3-2.4-2.6
Bone: cortical thickness0.91.01.6-1.2-0.0-1.1-1.3
Bone: cortical tissue density0.70.81.31.10.80.81.0
Bone: elastic displacement5.76.410.33.22.42.02.4
Bone: elastic work5.87.511.53.41.82.62.9
Bone: endosteal estimation1.32.99.4-0.9-3.10.90.6
Bone: endosteal perimeter0.91.85.2-0.2-2.31.10.9
Bone: final force1.11.82.9-1.7-1.3-1.1-1.1
Bone: final moment0.81.42.2-1.5-1.3-0.9-0.9
Bone: marrow area1.43.110.1-0.9-3.21.00.7
Bone: maximum diameter2.03.712.6-1.2-3.60.80.4
Bone: maximum force1.11.94.7-1.5-2.2-0.5-0.6
Bone: maximum moment0.91.64.2-1.3-2.1-0.4-0.4
Bone: minimum diameter1.63.08.3-1.8-2.9-0.3-0.4
Bone: periosteal estimation1.83.811.7-1.8-3.4-0.0-0.4
Bone: periosteal perimeter1.42.36.6-1.5-2.6-0.0-0.5
Bone: post-yield work4.96.79.6-3.1-2.7-2.1-2.3
Bone: stiffness2.03.25.5-2.3-2.0-1.3-1.3
Bone: tissue strength0.30.30.50.70.40.40.5
Bone: trabecular number2.33.612.2-1.4-3.50.2-0.2
Bone: trabecular spacing0.81.11.6-0.61.2-1.3-1.0
Bone: trabecular thickness1.31.65.0-1.1-2.2-0.0-0.4
Bone: trabecular tissue density0.91.32.80.0-1.71.11.0
Breakpoint value in progressive ratio session2.22.53.9-2.0-1.7-1.0-1.4
Distance traveled before self-admin0.00.00.10.00.20.30.0
Distance traveled after self-admin1.92.13.81.1-1.31.91.3
Delta time in closed arm before/after self-admin2.72.65.0-0.32.2-1.8-1.5
Delta time in open arm before/after self-admin1.71.62.60.2-1.61.61.2
Diff in mean of infusions in LGA sessions0.10.10.3-0.00.6-0.30.2
Extinction: sum of active levers before priming0.50.50.9-0.9-0.3-0.8-0.6
Active lever presses in extinction session 61.11.02.9-0.9-1.70.1-0.6
Delta distance traveled before/after self-admin1.21.32.40.5-1.51.11.2
Delta ambulatory time before/after self-admin2.02.15.60.1-2.41.31.1
Time in closed arm before self-admin0.30.30.60.4-0.40.80.5
Time in closed arm after self-admin1.21.31.9-0.80.8-1.4-1.4
Time in open arm before self-admin0.30.41.20.21.1-0.4-0.1
Time in open arm after self-admin0.50.51.40.0-1.20.70.4
Sum of active levers in priming session hrs 5-60.30.30.70.6-0.50.80.2
Time to tail flick, vehicle, before self-admin1.01.01.41.20.61.01.1
Time to tail flick, vehicle, after self-admin2.12.33.9-1.7-0.7-1.4-2.0
Time to tail flick, test, before self-admin0.50.51.6-0.1-1.30.50.4
Time to tail flick, test, after self-admin0.20.20.5-0.4-0.7-0.0-0.1
Delta time to tail flick, vehicle, before/after SA4.64.56.3-2.5-1.6-1.8-2.4
Delta time to tail flick, test, before/after SA0.40.40.7-0.8-0.1-0.6-0.6
Ambulatory time before self-admin0.40.41.10.51.00.50.3
Ambulatory time after self-admin2.72.95.51.4-1.12.41.7
Total heroin consumption1.41.73.0-1.2-1.7-0.1-1.4
Area under the delay curve4.24.56.8-2.6-1.6-2.2-1.9
Delay disc. indifference point, 0s delay2.52.74.2-2.1-1.5-1.3-1.6
Delay disc. indifference point, 16s delay3.23.24.7-2.2-2.2-1.5-1.2
Delay disc. indifference point, 2s delay0.70.71.7-0.9-1.3-0.5-0.4
Delay disc. indifference point, 24s delay3.63.55.6-2.4-1.0-2.1-1.7
Delay disc. indifference point, 4s delay4.04.26.5-2.6-1.6-1.8-2.1
Delay disc. indifference point, 8s delay2.52.63.6-1.9-0.7-1.9-1.6
Delay discount exponential model param4.54.87.22.71.62.32.0
Delay discount hyperbolic model param3.63.95.92.41.52.01.8
Fecal boli incidents, locomotor time 10.50.61.20.7-0.11.10.8
Change in fecal boli incidents, locomotor task0.20.20.4-0.6-0.0-0.4-0.6
Time >=10cm from walls, locomotor time 12.02.03.3-1.8-1.8-0.9-0.8
Bouts of movement, locomotor time 10.70.82.2-0.60.0-0.8-1.5
Total resting periods, locomotor time 11.11.33.0-1.0-0.5-0.9-1.7
Rest time, locomotor task time 10.20.20.40.5-0.20.60.2
Distance moved, locomotor task time 11.21.32.2-1.5-0.3-1.3-1.2
Vertical activity count, locomotor time 10.20.20.4-0.40.3-0.7-0.3
Time >=10cm from walls, locomotor time 22.32.54.3-2.1-1.5-1.4-1.2
Bouts of movement, locomotor time 20.40.51.0-0.21.0-0.5-0.7
Total resting periods, locomotor time 20.80.81.3-0.41.2-0.8-1.1
Rest time, locomotor task time 21.21.43.0-0.70.8-1.2-1.7
Distance moved, locomotor task time 20.20.30.7-0.6-0.8-0.10.2
Vertical activity count, locomotor time 20.20.20.60.2-0.20.30.7
Weight adjusted by age0.10.20.5-0.0-0.70.30.2
Seeking ratio, delayed vs. immediate footshock0.30.30.50.70.70.40.4
Locomotion in novel chamber2.73.45.42.20.42.31.8
Locomotion in novel chamber post-restriction0.60.71.6-1.1-1.3-0.3-0.4
Progressive ratio0.20.30.5-0.30.4-0.7-0.5
Food seeking constrained by brief footshock0.60.81.8-1.00.1-1.3-0.6
Seeking ratio, punishment vs. effort0.40.50.8-0.9-0.3-0.8-0.6
Run reversals in cocaine runway, females0.60.61.11.10.40.80.6
Run reversals in cocaine runway, males1.01.01.8-0.70.6-1.3-1.2
Latency to leave start box in cocaine runway0.80.92.10.2-0.71.01.4
Latency to leave start box in cocaine runway, F0.91.02.30.7-0.01.21.5
Latency to leave start box in cocaine runway, M0.40.40.8-0.9-0.9-0.4-0.0
Cd content in liver0.30.40.6-0.7-0.1-0.8-0.6
Co content in liver1.61.92.61.50.21.61.6
Cu content in liver0.10.10.30.20.5-0.4-0.3
Fe content in liver2.12.58.41.12.9-0.5-0.2
K content in liver0.30.30.40.60.70.40.3
Mg content in liver0.20.20.60.30.8-0.1-0.2
Mn content in liver0.50.61.3-0.11.1-0.9-0.6
Na content in liver0.50.51.80.31.3-0.3-0.4
Rb content in liver0.40.40.7-0.8-0.1-0.8-0.7
Se content in liver5.66.822.51.54.7-1.3-0.9
Sr content in liver1.81.62.71.2-0.41.71.5
Zn content in liver4.34.714.72.03.80.10.5