ENSRNOG00000064149

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression ENSRNOG00000064149 0.03 0.02 6.9e-04 0.02 0.02 0.02 0.02 3.9e-03 5.8e-03 5.9e-03 6.7e-03
2 Liver intron excision ratio chr7:7989065:8000489 0.03 0.03 6.4e-03 0.01 0 0.01 0.01 3.9e-02 8.5e-02 6.2e-02 3.0e-02
3 Liver intron excision ratio chr7:8040333:8059913 0.05 0.04 6.2e-06 0.05 0.04 0.06 0.04 6.9e-06 1.4e-05 6.9e-07 1.1e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail3.310.620.94.6-0.8-3.2
BMI without tail1.42.84.02.0-1.0-1.9
Body weight0.72.84.92.2-0.6-1.8
Epididymis fat weight0.20.40.6-0.7-0.80.0
Glucose0.60.91.61.2-0.4-1.0
Heart weight0.30.40.8-0.9-0.50.3
Left kidney weight0.30.81.8-0.01.40.8
Right kidney weight0.92.53.8-2.00.81.7
Tail length1.44.410.7-3.3-0.41.5
Length with tail0.93.36.7-2.60.51.7
Length without tail0.30.61.2-0.01.10.7
Liver weight, left1.32.13.51.9-0.9-1.4
Liver weight, right0.81.33.01.7-0.1-0.9
Parametrial fat weight0.20.41.0-1.0-0.40.4
Retroperitoneal fat weight0.41.31.71.1-1.0-1.3
Intraocular pressure0.70.92.3-0.5-1.5-0.5
Extensor digitorum longus weight2.510.215.43.9-2.1-3.3
Soleus weight4.312.426.85.2-0.8-3.1
Tibialis anterior weight0.41.53.21.8-0.2-1.1
Tibia length0.41.22.8-1.7-0.20.9
Number of licking bursts0.70.81.9-0.0-1.4-0.7
Food consumed during 24 hour testing period0.20.30.60.8-0.2-0.5
Times rat made contact with spout0.40.40.80.2-0.9-0.6
Mean time between licks in bursts1.92.76.3-2.5-0.51.3
Mean num. licks in bursts0.10.10.30.10.50.2
Std. dev. time between licks in bursts0.91.11.5-0.71.21.1
Water consumed over 24 hours0.60.71.11.01.1-0.0
Indifference point 0 sec0.10.20.30.60.1-0.4
Indifference point AUC0.50.61.3-1.20.00.7
Indifference point function ln k0.20.20.30.6-0.3-0.5
Indifference point function log k0.20.20.30.6-0.3-0.5
Delay discounting total patch changes 0 sec0.10.10.20.5-0.1-0.4
Delay discounting total patch changes 12 sec0.40.50.80.4-0.9-0.8
Delay discounting total patch changes 18 sec0.40.61.3-1.10.10.7
Delay discounting total patch changes 24 sec0.10.10.1-0.30.30.2
Delay discounting total patch changes 6 sec0.10.10.2-0.5-0.10.2
Delay discounting time to switch 0 sec1.01.53.21.81.0-0.5
Delay discounting water rate 0 sec0.60.92.1-0.5-1.5-0.5
Delay discounting water rate 12 sec1.21.72.60.9-1.6-1.4
Delay discounting water rate 18 sec2.12.76.5-0.8-2.5-1.0
Delay discounting water rate 24 sec3.14.39.8-0.1-3.1-1.8
Delay discounting water rate 6 sec1.11.63.3-1.1-1.8-0.4
Locomotor activity2.13.44.2-2.01.42.0
Locomotor testing distance1.21.92.6-1.60.91.5
Locomotor testing rearing0.00.00.1-0.2-0.3-0.0
Light reinforcement 12.75.010.4-3.20.52.1
Light reinforcement 20.81.02.2-1.50.20.9
Reaction time number correct0.81.21.80.6-1.3-1.1
Reaction time mean minus median0.50.60.9-1.00.50.8
Reaction time mean minus median AUC1.01.33.00.21.70.9
Reaction time num false alarms0.10.10.20.1-0.4-0.3
Reaction time num false alarms AUC0.20.30.70.1-0.8-0.5
Reaction time trials correct on left0.81.21.80.6-1.3-1.1
Reaction time trials on left0.71.01.60.6-1.2-1.1
Reaction time mean0.50.71.70.31.30.6
Reaction time mean AUC0.50.61.60.41.20.5
Median of all reaction times0.60.71.50.91.20.2
Reaction time omissions0.20.20.2-0.40.50.5
Reaction time false alarm rate0.00.00.00.10.20.1
Reaction time premature initiation rate0.70.91.7-1.3-1.00.2
Reaction time premature initiations1.11.53.2-1.1-1.8-0.4
Std. dev. reaction times0.40.60.9-0.41.00.8
Reaction time trials completed0.71.01.60.6-1.2-1.1
Reaction time trials AUC0.91.32.20.5-1.5-1.2
Social response proportion0.50.60.9-0.70.60.9
Social responses4.86.18.7-3.01.52.7
Social time0.40.60.80.9-0.5-0.8
Conditioned locomotion1.82.12.71.1-1.6-1.6
Cocaine response after cond. corrected3.64.04.62.1-1.8-2.1
Cocaine response after cond. not corrected4.04.45.02.1-1.9-2.2
Cocaine response before conditioning0.30.40.5-0.70.60.6
Saline control response0.10.10.20.1-0.5-0.5
Condit. Reinf. active minus inactive responses1.31.63.7-1.9-0.80.6
Condit. Reinf. active-inactive response ratio1.11.12.6-0.7-1.6-0.5
Condit. Reinf. active responses1.11.63.6-1.90.01.1
Condit. Reinf. inactive responses0.91.11.3-1.10.91.1
Condit. Reinf. lever presses1.21.64.0-2.0-0.60.7
Condit. Reinf. lever reinforcers received0.91.33.1-1.8-0.30.8
Pavlov. Cond. lever latency0.40.61.21.1-0.3-0.7
Pavlov. Cond. magazine entry latency0.40.40.5-0.70.60.7
Pavlov. Cond. change in total contacts0.50.61.5-1.2-0.00.7
Pavlov. Cond. index score0.50.61.3-1.10.20.7
Pavlov. Cond. latency score0.50.61.0-1.00.50.8
Pavlov. Cond. lever contacts0.40.51.4-1.2-0.10.5
Pavlov. Cond. magazine entry number0.60.70.91.0-0.6-0.9
Pavlov. Cond. intertrial magazine entries0.60.71.00.6-0.9-1.0
Pavlov. Cond. lever-magazine prob. diff.0.50.71.2-1.10.40.8
Pavlov. Cond. response bias0.91.33.0-1.7-0.10.8
Conditioned reinforcement - actives1.51.52.6-1.60.41.3
Conditioned reinforcement - inactives0.91.01.50.6-1.2-1.1
Conditioned locomotion4.04.810.3-3.20.22.0
Intermittent access intake day 1-15 change3.23.17.5-2.7-0.41.3
Intermittent access intake escalation3.53.48.0-2.8-1.30.8
Intermittent access intake escalation 24.14.19.8-3.1-1.11.1
Intermitt. access day 1 inactive lever presses0.50.50.8-0.9-0.8-0.0
Intermitt. access day 15 inactive lever presses0.30.30.5-0.7-0.60.2
Intermitt. access escalation Index1.00.91.90.71.40.5
Intermittent access day 1 total infusions0.10.10.20.40.1-0.1
Intermittent access day 15 total infusions0.91.02.2-1.5-0.70.5
Intermittent access terminal intake (last 3 days)0.50.61.2-1.10.10.8
Intermittent access total infusions0.10.10.2-0.4-0.40.1
Intermittent access day 1 locomotion0.10.20.3-0.5-0.40.2
Intermittent access day 15 total locomotion1.61.74.0-2.0-0.50.9
Intermittent access total locomotion0.40.51.1-1.1-0.10.6
Intermittent access standard deviation1.61.74.0-2.0-0.51.0
Cocaine induced anxiety1.11.31.9-0.71.41.2
Post-drug Anxiety1.51.63.3-0.41.81.2
Baseline Anxiety0.10.10.4-0.2-0.6-0.2
Lifetime Intake0.00.00.0-0.2-0.00.2
Incentive Sensitization - Responses0.30.30.5-0.7-0.50.2
Incentive Sensitization - Breakpoint0.30.30.6-0.7-0.30.4
Progressive ratio test 1 active lever presses0.20.20.20.3-0.5-0.4
Progressive ratio test 1 breakpoint0.10.10.20.4-0.3-0.4
Progressive ratio test 1 inactive lever presses0.00.00.0-0.0-0.00.1
Progressive ratio test 2 active lever presses0.20.20.3-0.6-0.50.2
Progressive ratio test 2 breakpoint0.20.20.3-0.60.10.5
Progressive ratio test 2 inactive lever presses0.00.10.1-0.20.20.3
Total sessions with >9 infusions0.50.61.20.21.10.7
Short access day 1 total inactive lever presses0.00.00.0-0.2-0.00.1
Short access day 10 total inactive lever presses0.20.30.5-0.4-0.7-0.2
Short access day 1 total infusions0.60.61.3-0.01.20.7
Short access day 10 total infusions0.00.00.00.0-0.00.1
Short access total infusions0.30.30.60.20.80.5
Short access day 1 locomotion0.50.50.7-0.70.60.9
Short access day 10 total locomotion2.02.25.2-2.3-0.51.0
Short access total locomotion0.50.50.8-0.90.40.8
Compulsive drug intake0.40.40.91.00.2-0.6
One hour access (0.3 mA shock)0.10.20.30.5-0.3-0.4
One hour access (shock baseline)0.20.20.6-0.2-0.8-0.2
Number of responses in last shaping day0.10.10.1-0.30.20.3
Context. condit. distance diff. score0.20.20.40.6-0.2-0.4
Locomotion velocity, session 11.11.22.0-0.61.41.1
Locomotion distance, session 11.11.43.40.11.80.9
Locomotion velocity, session 23.23.84.4-1.62.12.1
Locomotion distance, session 22.02.84.6-1.02.11.7
Locomotion velocity, session 33.03.47.5-2.70.21.7
Locomotion distance, session 30.00.00.1-0.2-0.20.0
Stereotopy head waving bouts, day 32.53.04.9-2.21.01.7
Stereotopy head waving duration, day 32.73.36.1-2.50.81.8
Locomotion velocity, session 70.50.60.7-0.80.60.8
Locomotion distance, session 70.30.30.8-0.0-0.9-0.5
Stereotopy head waving bouts, day 70.70.82.00.31.40.6
Stereotopy head waving duration, day 71.01.22.7-0.01.70.9
Locomotion velocity, session 81.62.04.1-0.22.01.3
Locomotion distance, session 80.20.20.5-0.20.70.5
Degree of sensitization distance0.20.20.40.7-0.0-0.4
Degree of sensitization stereotypy1.21.32.71.61.0-0.4
Condit. Reinf. active minus inactive responses2.02.34.6-2.10.41.4
Condit. Reinf. active-inactive response ratio1.11.22.8-1.7-0.40.7
Condit. Reinf. active responses2.22.73.6-1.91.21.7
Condit. Reinf. inactive responses1.11.32.1-0.61.41.1
Incentive salience index mean1.51.82.1-1.41.11.5
Condit. Reinf. lever presses1.31.74.00.32.01.0
Time in familiar zone, hab. session 11.11.02.4-1.6-0.30.7
Time in novel zone, hab. session 11.00.91.51.21.2-0.1
Total zone transitions, hab. session 11.21.62.6-0.81.61.3
Total locomotion distance, hab. session 12.33.36.4-0.72.51.8
Locomotion velocity, hab. session 11.92.84.3-1.12.11.7
Time in familiar zone, hab. session 23.23.38.0-2.8-0.81.1
Time in novel zone, hab. session 22.52.55.92.41.0-0.8
Total zone transitions, hab. session 21.11.43.30.81.80.5
Total locomotion distance, hab. session 21.01.42.1-0.81.41.2
Locomotion velocity, hab. session 21.31.83.2-0.71.81.3
Novel to familiar place preference ratio2.32.45.22.31.3-0.6
Novelty place preference1.61.63.21.81.3-0.3
Time in novel zone, NPP test1.61.73.51.91.2-0.4
Total zone transitions, NPP test0.20.40.90.30.90.3
Total locomotion distance, NPP test0.50.81.90.41.40.5
Locomotion velocity, NPP test0.50.71.80.11.30.7
Pavlov. Cond. lever latency0.60.81.8-0.3-1.4-0.6
Pavlov. Cond. magazine entry latency1.21.63.7-1.9-0.11.0
Pavlov. Cond. change in total contacts0.00.00.1-0.20.10.2
Pavlov. Cond. index score0.40.60.8-0.50.90.8
Pavlov. Cond. latency score0.70.91.7-0.41.30.9
Pavlov. Cond. lever contacts1.01.12.70.11.60.9
Pavlov. Cond. magazine entry number0.30.30.70.8-0.1-0.6
Pavlov. Cond. intertrial magazine entries0.40.41.0-0.5-1.0-0.3
Pavlov. Cond. lever-magazine prob. diff.0.60.70.9-0.80.90.9
Pavlov. Cond. response bias0.50.61.2-1.10.30.8
Bone: apparent density1.83.07.00.52.61.3
Bone surface3.86.715.10.23.92.2
Bone volume3.96.715.10.23.92.2
Bone: connectivity density1.11.73.90.82.00.8
Bone: cortical apparent density0.60.71.61.3-0.2-0.7
Bone: cortical area0.81.22.01.21.40.3
Bone: cortical porosity0.50.50.7-0.60.80.8
Bone: cortical porosity0.60.61.30.11.20.7
Bone: cortical thickness0.61.02.51.60.6-0.5
Bone: cortical thickness0.30.30.7-0.2-0.8-0.4
Bone: cortical tissue density0.40.51.21.1-0.2-0.6
Bone: elastic displacement0.20.20.3-0.60.20.5
Bone: elastic work0.20.20.30.60.60.1
Bone: endosteal estimation0.20.40.70.80.80.1
Bone: endosteal perimeter0.61.12.0-0.41.41.1
Bone: final force0.81.32.61.61.2-0.2
Bone: final moment0.71.12.21.51.1-0.1
Bone: marrow area0.20.40.70.90.70.1
Bone: maximum diameter1.01.83.1-0.61.81.4
Bone: maximum force0.71.32.91.70.9-0.3
Bone: maximum moment0.61.12.51.60.9-0.2
Bone: minimum diameter0.30.61.30.41.10.5
Bone: periosteal estimation0.71.32.51.21.60.4
Bone: periosteal perimeter0.81.32.90.21.71.0
Bone: post-yield work0.30.51.01.0-0.1-0.6
Bone: stiffness1.52.35.72.40.5-0.9
Bone: tissue strength0.90.92.31.50.2-0.6
Bone: trabecular number1.42.23.6-0.81.91.5
Bone: trabecular spacing2.53.26.80.2-2.6-1.7
Bone: trabecular thickness4.35.211.90.63.51.8
Bone: trabecular tissue density1.82.52.81.7-1.4-1.7
Breakpoint value in progressive ratio session2.42.77.0-2.6-0.40.9
Distance traveled before self-admin0.20.20.30.50.4-0.2
Distance traveled after self-admin0.30.30.7-0.80.40.0
Delta time in closed arm before/after self-admin2.52.44.90.3-2.2-1.5
Delta time in open arm before/after self-admin0.90.91.41.20.2-1.1
Diff in mean of infusions in LGA sessions0.50.61.7-1.30.0-0.1
Extinction: sum of active levers before priming1.11.12.1-1.5-1.1-0.2
Active lever presses in extinction session 62.22.13.3-1.70.51.8
Delta distance traveled before/after self-admin0.60.61.3-1.20.20.7
Delta ambulatory time before/after self-admin0.70.81.3-1.10.70.7
Time in closed arm before self-admin0.91.01.51.21.10.6
Time in closed arm after self-admin0.00.00.1-0.0-0.10.3
Time in open arm before self-admin0.70.81.5-1.2-0.30.9
Time in open arm after self-admin0.60.71.10.7-0.5-1.1
Sum of active levers in priming session hrs 5-60.30.30.8-0.0-0.2-0.9
Time to tail flick, vehicle, before self-admin3.73.78.2-0.51.72.9
Time to tail flick, vehicle, after self-admin0.40.50.9-0.5-0.90.5
Time to tail flick, test, before self-admin2.42.44.6-0.11.62.2
Time to tail flick, test, after self-admin1.11.12.2-0.31.11.5
Delta time to tail flick, vehicle, before/after SA2.82.74.90.3-1.8-2.2
Delta time to tail flick, test, before/after SA0.40.40.9-0.5-1.0-0.1
Ambulatory time before self-admin0.10.10.20.50.1-0.1
Ambulatory time after self-admin0.20.20.4-0.60.3-0.2
Total heroin consumption1.11.32.1-1.40.61.2
Area under the delay curve1.11.12.61.60.4-0.8
Delay disc. indifference point, 0s delay4.24.610.03.21.6-1.1
Delay disc. indifference point, 16s delay0.10.10.20.40.2-0.2
Delay disc. indifference point, 2s delay2.93.37.52.70.8-1.3
Delay disc. indifference point, 24s delay0.30.30.50.7-0.2-0.6
Delay disc. indifference point, 4s delay0.90.91.61.21.1-0.2
Delay disc. indifference point, 8s delay0.60.60.80.9-0.6-0.9
Delay discount exponential model param0.91.02.3-1.5-0.30.8
Delay discount hyperbolic model param1.41.43.3-1.8-0.40.9
Fecal boli incidents, locomotor time 11.21.31.51.2-1.1-1.2
Change in fecal boli incidents, locomotor task1.11.02.1-0.21.40.9
Time >=10cm from walls, locomotor time 10.50.50.90.81.00.1
Bouts of movement, locomotor time 10.10.10.2-0.4-0.20.3
Total resting periods, locomotor time 10.10.10.2-0.50.10.4
Rest time, locomotor task time 10.10.10.2-0.30.30.4
Distance moved, locomotor task time 10.50.61.00.81.0-0.0
Vertical activity count, locomotor time 10.10.10.20.1-0.4-0.3
Time >=10cm from walls, locomotor time 20.80.80.91.0-0.8-1.0
Bouts of movement, locomotor time 20.80.81.5-0.41.21.0
Total resting periods, locomotor time 20.91.01.8-0.31.31.0
Rest time, locomotor task time 20.50.60.8-0.60.90.9
Distance moved, locomotor task time 20.80.91.10.8-1.0-1.0
Vertical activity count, locomotor time 21.31.42.40.6-1.6-1.2
Weight adjusted by age0.30.30.70.4-0.8-0.5
Seeking ratio, delayed vs. immediate footshock2.73.15.5-2.40.91.7
Locomotion in novel chamber0.30.30.8-0.9-0.30.3
Locomotion in novel chamber post-restriction0.30.40.8-0.90.20.6
Progressive ratio0.20.20.40.2-0.6-0.3
Food seeking constrained by brief footshock0.10.10.2-0.40.10.2
Seeking ratio, punishment vs. effort0.10.10.1-0.20.30.2
Run reversals in cocaine runway, females0.80.81.0-0.81.00.9
Run reversals in cocaine runway, males1.01.01.0-1.00.91.0
Latency to leave start box in cocaine runway1.31.42.2-0.71.51.3
Latency to leave start box in cocaine runway, F1.81.94.70.52.21.0
Latency to leave start box in cocaine runway, M1.81.73.6-1.9-1.00.7
Cd content in liver0.10.10.20.50.1-0.3
Co content in liver0.40.40.9-1.0-0.50.2
Cu content in liver0.50.61.40.51.20.4
Fe content in liver0.20.20.5-0.2-0.7-0.2
K content in liver0.60.61.30.21.10.6
Mg content in liver0.90.92.00.21.40.8
Mn content in liver3.13.56.8-0.52.61.9
Na content in liver0.60.61.41.20.6-0.3
Rb content in liver0.81.02.00.91.40.3
Se content in liver0.10.20.2-0.40.30.5
Sr content in liver0.80.71.8-0.3-1.3-0.5
Zn content in liver2.02.23.5-1.9-1.70.1