ENSRNOG00000063741

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000063741 0.07 0.05 1.8e-03 0.03 0.03 0.02 0.02 1.1e-02 1.7e-02 4.2e-02 2.2e-02
2 Liver gene expression ENSRNOG00000063741 0.13 0.08 1.9e-12 0.09 0.09 0.09 0.09 1.0e-09 7.1e-10 3.5e-10 7.7e-10
3 OFC gene expression ENSRNOG00000063741 0.28 0.18 2.0e-04 0.15 0.07 0.1 0.1 2.2e-04 8.2e-03 1.9e-03 1.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail2.99.310.43.2-2.73.2
BMI without tail5.611.714.33.2-3.83.3
Body weight4.418.618.84.3-4.34.3
Epididymis fat weight0.30.71.20.6-1.10.7
Glucose1.32.12.31.4-1.51.4
Heart weight0.71.01.80.8-1.30.8
Left kidney weight0.82.42.91.5-1.71.5
Right kidney weight0.10.20.3-0.4-0.5-0.3
Tail length1.95.910.01.9-3.22.0
Length with tail0.93.55.51.6-2.31.6
Length without tail0.10.20.5-0.30.7-0.3
Liver weight, left0.20.40.6-0.5-0.8-0.5
Liver weight, right0.30.40.7-0.80.1-0.8
Parametrial fat weight0.10.20.40.3-0.60.3
Retroperitoneal fat weight0.20.60.8-0.80.6-0.9
Intraocular pressure3.34.75.02.2-2.02.2
Extensor digitorum longus weight5.221.024.44.4-4.94.4
Soleus weight0.20.50.6-0.8-0.5-0.7
Tibialis anterior weight7.124.430.84.6-5.54.6
Tibia length0.30.81.3-1.1-0.2-1.1
Number of licking bursts3.94.65.12.1-2.32.1
Food consumed during 24 hour testing period0.60.71.40.6-1.20.6
Times rat made contact with spout0.60.60.90.9-0.40.9
Mean time between licks in bursts2.33.24.2-2.11.0-2.1
Mean num. licks in bursts1.82.12.8-1.31.7-1.3
Std. dev. time between licks in bursts0.81.01.2-1.10.8-1.1
Water consumed over 24 hours1.21.51.71.3-1.01.3
Indifference point 0 sec2.54.15.12.3-1.52.2
Indifference point AUC9.010.512.23.2-3.53.0
Indifference point function ln k2.63.64.7-1.82.2-1.7
Indifference point function log k2.63.64.7-1.82.2-1.7
Delay discounting total patch changes 0 sec3.45.56.72.6-1.82.6
Delay discounting total patch changes 12 sec4.86.37.42.7-2.12.7
Delay discounting total patch changes 18 sec1.31.71.91.3-1.41.2
Delay discounting total patch changes 24 sec5.36.67.32.7-2.42.6
Delay discounting total patch changes 6 sec6.59.911.03.3-2.83.3
Delay discounting time to switch 0 sec4.77.27.9-2.82.5-2.7
Delay discounting water rate 0 sec5.28.310.03.2-2.23.1
Delay discounting water rate 12 sec0.10.20.30.5-0.20.5
Delay discounting water rate 18 sec1.31.72.31.5-0.71.5
Delay discounting water rate 24 sec0.20.20.40.50.30.6
Delay discounting water rate 6 sec0.60.80.90.9-0.90.9
Locomotor activity0.00.00.0-0.1-0.1-0.1
Locomotor testing distance0.00.10.1-0.3-0.2-0.3
Locomotor testing rearing0.50.81.60.6-1.30.6
Light reinforcement 10.61.22.60.7-1.60.6
Light reinforcement 20.40.51.40.4-1.20.3
Reaction time number correct0.30.40.50.7-0.60.7
Reaction time mean minus median0.00.10.1-0.3-0.2-0.3
Reaction time mean minus median AUC0.20.30.70.3-0.80.3
Reaction time num false alarms0.00.00.0-0.1-0.1-0.2
Reaction time num false alarms AUC0.30.40.70.6-0.90.5
Reaction time trials correct on left0.30.40.50.7-0.60.7
Reaction time trials on left0.20.30.30.5-0.50.6
Reaction time mean3.44.75.2-2.31.9-2.3
Reaction time mean AUC3.74.95.3-2.32.0-2.3
Median of all reaction times5.67.68.1-2.82.5-2.8
Reaction time omissions2.63.53.9-2.01.7-1.9
Reaction time false alarm rate0.10.10.2-0.30.1-0.4
Reaction time premature initiation rate2.02.75.0-1.22.2-1.3
Reaction time premature initiations0.91.32.8-0.71.7-0.8
Std. dev. reaction times0.91.31.7-1.30.7-1.3
Reaction time trials completed0.20.30.30.5-0.50.6
Reaction time trials AUC0.20.30.40.5-0.40.6
Social response proportion6.06.57.8-2.82.2-2.6
Social responses0.20.20.60.1-0.70.2
Social time2.12.84.0-2.00.6-2.0
Conditioned locomotion0.20.30.40.6-0.30.6
Cocaine response after cond. corrected1.01.11.2-1.01.1-1.0
Cocaine response after cond. not corrected1.21.41.6-1.30.9-1.3
Cocaine response before conditioning0.30.30.90.3-0.90.3
Saline control response0.81.01.31.0-1.11.0
Condit. Reinf. active minus inactive responses0.70.91.10.9-1.00.9
Condit. Reinf. active-inactive response ratio0.20.20.30.6-0.30.6
Condit. Reinf. active responses2.23.04.21.5-2.11.6
Condit. Reinf. inactive responses2.12.64.01.4-2.01.4
Condit. Reinf. lever presses1.52.02.71.3-1.61.3
Condit. Reinf. lever reinforcers received2.43.34.81.6-2.21.6
Pavlov. Cond. lever latency1.52.12.8-1.31.7-1.3
Pavlov. Cond. magazine entry latency1.51.72.2-1.50.9-1.5
Pavlov. Cond. change in total contacts0.00.10.20.0-0.40.0
Pavlov. Cond. index score0.10.10.1-0.3-0.1-0.3
Pavlov. Cond. latency score0.00.00.1-0.0-0.2-0.0
Pavlov. Cond. lever contacts0.81.11.50.9-1.20.9
Pavlov. Cond. magazine entry number0.30.30.40.7-0.30.7
Pavlov. Cond. intertrial magazine entries1.01.31.51.2-1.01.2
Pavlov. Cond. lever-magazine prob. diff.0.10.10.2-0.4-0.0-0.4
Pavlov. Cond. response bias0.10.10.30.1-0.60.1
Conditioned reinforcement - actives0.80.81.31.0-0.41.1
Conditioned reinforcement - inactives0.10.10.10.20.10.4
Conditioned locomotion1.51.82.61.5-0.81.6
Intermittent access intake day 1-15 change0.10.10.20.4-0.20.4
Intermittent access intake escalation0.60.60.80.9-0.50.8
Intermittent access intake escalation 20.50.50.70.9-0.40.7
Intermitt. access day 1 inactive lever presses1.11.21.31.2-1.01.1
Intermitt. access day 15 inactive lever presses0.30.40.50.7-0.30.7
Intermitt. access escalation Index1.21.01.21.0-1.11.0
Intermittent access day 1 total infusions0.30.40.60.7-0.00.8
Intermittent access day 15 total infusions1.82.02.71.6-0.81.6
Intermittent access terminal intake (last 3 days)2.42.63.51.9-1.01.9
Intermittent access total infusions3.23.54.72.1-1.22.2
Intermittent access day 1 locomotion0.10.10.20.40.20.4
Intermittent access day 15 total locomotion0.20.30.30.50.50.5
Intermittent access total locomotion0.30.30.40.60.40.6
Intermittent access standard deviation0.50.50.70.8-0.50.8
Cocaine induced anxiety1.41.62.1-1.21.4-1.2
Post-drug Anxiety0.10.10.1-0.3-0.3-0.3
Baseline Anxiety0.60.71.50.5-1.20.5
Lifetime Intake3.53.95.12.2-1.42.3
Incentive Sensitization - Responses0.10.10.10.3-0.00.4
Incentive Sensitization - Breakpoint0.10.10.10.20.10.3
Progressive ratio test 1 active lever presses2.93.04.51.9-0.92.1
Progressive ratio test 1 breakpoint3.13.24.72.0-1.02.2
Progressive ratio test 1 inactive lever presses1.92.02.61.5-1.11.6
Progressive ratio test 2 active lever presses1.01.11.71.1-0.51.3
Progressive ratio test 2 breakpoint0.70.81.31.0-0.21.1
Progressive ratio test 2 inactive lever presses0.91.01.41.1-0.61.2
Total sessions with >9 infusions0.91.01.51.1-0.61.2
Short access day 1 total inactive lever presses4.85.46.52.5-1.92.6
Short access day 10 total inactive lever presses0.10.10.20.4-0.30.3
Short access day 1 total infusions3.63.84.62.1-1.62.1
Short access day 10 total infusions2.32.63.31.7-1.21.8
Short access total infusions1.61.82.31.4-1.01.5
Short access day 1 locomotion0.10.10.20.3-0.20.4
Short access day 10 total locomotion0.50.50.8-0.60.9-0.6
Short access total locomotion0.40.40.50.7-0.40.7
Compulsive drug intake0.40.40.80.5-0.90.4
One hour access (0.3 mA shock)1.92.22.71.6-1.11.6
One hour access (shock baseline)2.22.53.51.8-0.91.9
Number of responses in last shaping day0.50.50.60.7-0.80.7
Context. condit. distance diff. score0.10.10.20.10.50.1
Locomotion velocity, session 11.01.11.41.0-1.21.0
Locomotion distance, session 10.40.61.00.6-1.00.6
Locomotion velocity, session 21.82.12.51.4-1.61.4
Locomotion distance, session 21.31.84.10.8-2.00.8
Locomotion velocity, session 30.10.10.10.2-0.40.2
Locomotion distance, session 34.54.85.22.3-2.02.3
Stereotopy head waving bouts, day 30.20.20.3-0.50.2-0.5
Stereotopy head waving duration, day 30.50.50.6-0.80.6-0.8
Locomotion velocity, session 70.00.00.1-0.10.2-0.1
Locomotion distance, session 70.40.50.50.7-0.70.7
Stereotopy head waving bouts, day 73.33.73.92.0-1.82.0
Stereotopy head waving duration, day 70.40.50.80.6-0.90.6
Locomotion velocity, session 80.30.30.4-0.7-0.2-0.7
Locomotion distance, session 80.10.20.50.2-0.70.2
Degree of sensitization distance2.52.52.8-1.71.4-1.7
Degree of sensitization stereotypy2.42.62.91.7-1.41.7
Condit. Reinf. active minus inactive responses0.30.30.50.4-0.70.4
Condit. Reinf. active-inactive response ratio0.91.01.0-1.01.0-1.0
Condit. Reinf. active responses2.02.53.41.4-1.81.4
Condit. Reinf. inactive responses1.92.33.41.3-1.81.3
Incentive salience index mean4.04.86.32.0-2.52.0
Condit. Reinf. lever presses10.413.917.93.5-4.23.5
Time in familiar zone, hab. session 10.40.41.1-0.01.1-0.0
Time in novel zone, hab. session 12.62.53.5-1.90.8-1.9
Total zone transitions, hab. session 10.00.00.1-0.30.0-0.3
Total locomotion distance, hab. session 10.00.00.10.1-0.30.1
Locomotion velocity, hab. session 10.71.01.50.8-1.20.8
Time in familiar zone, hab. session 21.31.41.7-1.11.3-1.1
Time in novel zone, hab. session 20.40.40.4-0.60.6-0.6
Total zone transitions, hab. session 20.40.61.10.5-1.10.5
Total locomotion distance, hab. session 20.60.81.30.7-1.10.7
Locomotion velocity, hab. session 20.91.21.81.0-1.31.0
Novel to familiar place preference ratio2.02.12.3-1.41.5-1.4
Novelty place preference3.03.13.6-1.71.9-1.7
Time in novel zone, NPP test4.04.24.7-2.02.2-2.0
Total zone transitions, NPP test0.50.81.70.6-1.30.6
Total locomotion distance, NPP test2.53.54.31.8-2.11.8
Locomotion velocity, NPP test3.34.85.52.1-2.32.1
Pavlov. Cond. lever latency6.98.811.4-2.73.4-2.7
Pavlov. Cond. magazine entry latency0.10.10.40.1-0.60.1
Pavlov. Cond. change in total contacts2.52.73.61.5-1.91.5
Pavlov. Cond. index score2.02.64.31.3-2.11.3
Pavlov. Cond. latency score2.12.74.11.4-2.01.4
Pavlov. Cond. lever contacts5.46.48.12.4-2.82.4
Pavlov. Cond. magazine entry number0.30.40.8-0.50.9-0.5
Pavlov. Cond. intertrial magazine entries0.10.20.20.4-0.50.4
Pavlov. Cond. lever-magazine prob. diff.1.82.23.61.3-1.91.3
Pavlov. Cond. response bias2.53.04.31.5-2.11.5
Bone: apparent density1.52.52.81.7-1.41.7
Bone surface1.11.91.91.4-1.41.4
Bone volume0.91.61.71.3-1.21.3
Bone: connectivity density0.91.51.71.3-1.01.3
Bone: cortical apparent density0.20.20.4-0.40.7-0.4
Bone: cortical area1.72.53.11.5-1.81.5
Bone: cortical porosity0.40.40.6-0.60.8-0.6
Bone: cortical porosity0.10.10.10.3-0.00.3
Bone: cortical thickness0.71.21.41.2-0.91.2
Bone: cortical thickness0.20.30.3-0.50.6-0.5
Bone: cortical tissue density0.20.30.5-0.40.7-0.4
Bone: elastic displacement3.54.06.2-1.72.5-1.7
Bone: elastic work1.72.23.8-1.21.9-1.2
Bone: endosteal estimation0.81.73.21.0-1.81.0
Bone: endosteal perimeter1.02.13.41.2-1.81.2
Bone: final force0.60.92.10.6-1.50.6
Bone: final moment0.30.51.40.3-1.20.3
Bone: marrow area0.91.93.31.1-1.81.1
Bone: maximum diameter1.73.14.61.5-2.11.5
Bone: maximum force1.72.95.31.3-2.31.3
Bone: maximum moment1.12.03.81.0-2.01.0
Bone: minimum diameter0.00.00.0-0.20.2-0.2
Bone: periosteal estimation1.12.33.81.2-1.91.2
Bone: periosteal perimeter0.50.81.30.7-1.20.7
Bone: post-yield work1.01.32.80.8-1.70.8
Bone: stiffness1.72.75.91.0-2.41.0
Bone: tissue strength0.80.81.1-1.1-0.1-1.1
Bone: trabecular number1.11.71.71.3-1.21.3
Bone: trabecular spacing0.00.00.1-0.20.3-0.2
Bone: trabecular thickness0.00.10.1-0.20.3-0.2
Bone: trabecular tissue density0.91.33.20.6-1.80.6
Breakpoint value in progressive ratio session0.10.10.10.2-0.30.3
Distance traveled before self-admin5.15.56.62.3-2.62.1
Distance traveled after self-admin0.10.20.3-0.3-0.5-0.3
Delta time in closed arm before/after self-admin1.51.42.21.1-1.51.0
Delta time in open arm before/after self-admin0.20.20.2-0.50.4-0.5
Diff in mean of infusions in LGA sessions0.20.20.3-0.40.3-0.6
Extinction: sum of active levers before priming2.32.32.8-1.71.2-1.6
Active lever presses in extinction session 60.00.00.0-0.10.10.0
Delta distance traveled before/after self-admin2.52.63.5-1.91.2-1.7
Delta ambulatory time before/after self-admin4.95.36.5-2.61.8-2.4
Time in closed arm before self-admin1.71.93.6-1.11.9-1.0
Time in closed arm after self-admin0.20.20.4-0.30.7-0.4
Time in open arm before self-admin2.32.53.71.3-1.91.4
Time in open arm after self-admin2.42.62.81.6-1.71.6
Sum of active levers in priming session hrs 5-61.41.41.9-1.11.4-1.1
Time to tail flick, vehicle, before self-admin0.70.71.3-0.51.2-0.7
Time to tail flick, vehicle, after self-admin0.10.10.10.30.00.3
Time to tail flick, test, before self-admin0.50.50.70.8-0.40.8
Time to tail flick, test, after self-admin0.91.01.31.1-0.61.1
Delta time to tail flick, vehicle, before/after SA0.00.00.10.0-0.30.1
Delta time to tail flick, test, before/after SA0.00.00.0-0.00.2-0.1
Ambulatory time before self-admin5.05.36.12.3-2.52.1
Ambulatory time after self-admin0.10.20.3-0.3-0.5-0.3
Total heroin consumption0.00.00.0-0.20.1-0.1
Area under the delay curve0.10.10.2-0.40.2-0.5
Delay disc. indifference point, 0s delay1.11.21.6-1.01.0-1.3
Delay disc. indifference point, 16s delay0.10.10.1-0.30.3-0.3
Delay disc. indifference point, 2s delay0.00.00.00.0-0.00.2
Delay disc. indifference point, 24s delay0.30.30.5-0.70.4-0.5
Delay disc. indifference point, 4s delay0.10.10.1-0.30.1-0.4
Delay disc. indifference point, 8s delay0.00.00.1-0.0-0.30.0
Delay discount exponential model param0.10.10.10.3-0.10.3
Delay discount hyperbolic model param0.00.10.10.3-0.10.3
Fecal boli incidents, locomotor time 10.60.70.8-0.80.9-0.8
Change in fecal boli incidents, locomotor task1.91.82.21.5-1.01.5
Time >=10cm from walls, locomotor time 10.20.20.30.5-0.20.4
Bouts of movement, locomotor time 12.42.73.2-1.51.6-1.8
Total resting periods, locomotor time 13.33.74.4-1.71.9-2.1
Rest time, locomotor task time 14.14.55.1-2.12.0-2.2
Distance moved, locomotor task time 13.94.24.42.0-2.12.1
Vertical activity count, locomotor time 11.81.92.51.2-1.61.3
Time >=10cm from walls, locomotor time 20.00.00.10.0-0.30.0
Bouts of movement, locomotor time 20.50.60.80.6-0.90.7
Total resting periods, locomotor time 20.30.30.30.5-0.50.5
Rest time, locomotor task time 21.01.11.4-0.91.2-1.1
Distance moved, locomotor task time 20.10.10.2-0.2-0.4-0.0
Vertical activity count, locomotor time 20.20.20.6-0.1-0.70.1
Weight adjusted by age0.80.91.21.0-0.81.1
Seeking ratio, delayed vs. immediate footshock5.56.36.82.5-2.42.6
Locomotion in novel chamber0.00.00.0-0.10.1-0.1
Locomotion in novel chamber post-restriction0.60.71.10.7-1.00.7
Progressive ratio0.00.00.0-0.20.1-0.0
Food seeking constrained by brief footshock11.514.114.23.7-3.83.8
Seeking ratio, punishment vs. effort2.83.53.81.9-1.81.8
Run reversals in cocaine runway, females0.10.10.1-0.30.2-0.2
Run reversals in cocaine runway, males0.00.00.00.10.20.1
Latency to leave start box in cocaine runway0.60.60.80.9-0.60.9
Latency to leave start box in cocaine runway, F0.00.00.00.20.10.2
Latency to leave start box in cocaine runway, M1.51.41.41.2-1.21.2
Cd content in liver0.10.10.30.2-0.50.1
Co content in liver1.21.51.5-1.21.2-1.2
Cu content in liver2.53.03.5-1.91.6-1.8
Fe content in liver0.10.10.2-0.3-0.4-0.3
K content in liver0.20.20.2-0.50.4-0.4
Mg content in liver0.20.20.4-0.40.6-0.3
Mn content in liver0.00.00.00.1-0.20.1
Na content in liver4.14.35.5-2.41.5-2.3
Rb content in liver3.94.95.7-2.12.4-2.1
Se content in liver0.50.61.70.3-1.30.3
Sr content in liver0.30.20.50.3-0.70.3
Zn content in liver0.00.00.00.10.10.2