ENSRNOG00000063658

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000063658 0.07 0.05 9.8e-07 0.06 0.05 0.04 0.04 9.0e-07 2.7e-06 9.4e-06 1.0e-05
2 Adipose intron excision ratio chr3:116406947:116408408 0.05 0.04 5.5e-05 0.03 0.03 0.04 0.04 1.7e-04 1.6e-04 4.5e-05 4.8e-05
3 Brain intron excision ratio chr3:116408104:116408408 0.04 0.03 1.6e-03 0.03 0.02 0.01 0.02 6.7e-04 4.4e-03 2.0e-02 2.3e-03
4 PL gene expression ENSRNOG00000063658 0.07 0.05 5.1e-04 0.01 0.03 0.03 0.02 3.4e-02 3.0e-03 1.9e-03 1.4e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.61.95.01.6-0.32.2-0.2
BMI without tail1.94.011.62.0-0.13.4-0.6
Body weight2.410.026.91.71.35.2-2.9
Epididymis fat weight0.30.71.80.60.11.4-0.8
Glucose0.20.20.4-0.20.60.6-0.4
Heart weight4.56.410.9-1.02.72.6-3.3
Left kidney weight1.33.86.3-1.52.31.3-2.5
Right kidney weight1.23.46.2-1.42.01.2-2.5
Tail length2.06.217.71.90.44.2-1.8
Length with tail2.17.713.1-0.02.13.6-3.6
Length without tail0.81.83.8-0.81.41.0-2.0
Liver weight, left1.32.23.9-1.92.00.1-1.1
Liver weight, right0.00.00.1-0.20.1-0.3-0.0
Parametrial fat weight0.20.30.60.3-0.5-0.60.8
Retroperitoneal fat weight0.00.20.3-0.50.60.1-0.1
Intraocular pressure0.50.70.91.0-0.70.61.0
Extensor digitorum longus weight0.10.50.90.8-0.41.00.5
Soleus weight0.20.60.9-0.51.00.9-0.7
Tibialis anterior weight0.51.85.30.70.62.3-0.9
Tibia length2.36.413.43.1-1.53.7-0.5
Number of licking bursts0.60.71.60.7-0.30.71.3
Food consumed during 24 hour testing period0.30.40.7-0.90.4-0.80.2
Times rat made contact with spout0.00.00.0-0.20.1-0.2-0.0
Mean time between licks in bursts0.40.51.00.7-1.0-0.30.8
Mean num. licks in bursts1.01.22.1-1.10.6-0.9-1.4
Std. dev. time between licks in bursts0.40.41.20.20.41.1-0.6
Water consumed over 24 hours0.10.10.20.4-0.40.10.5
Indifference point 0 sec1.21.92.9-1.71.6-0.3-1.4
Indifference point AUC0.20.20.40.00.40.6-0.6
Indifference point function ln k0.40.51.0-0.71.00.4-0.6
Indifference point function log k0.40.51.0-0.71.00.4-0.6
Delay discounting total patch changes 0 sec1.32.13.2-1.81.7-0.2-1.5
Delay discounting total patch changes 12 sec0.10.10.2-0.0-0.1-0.2-0.5
Delay discounting total patch changes 18 sec1.11.42.9-1.71.2-1.1-0.2
Delay discounting total patch changes 24 sec2.32.96.0-2.52.0-1.3-0.3
Delay discounting total patch changes 6 sec1.42.13.2-1.41.70.4-1.8
Delay discounting time to switch 0 sec3.24.87.71.3-2.6-1.82.8
Delay discounting water rate 0 sec4.16.510.4-1.32.92.4-3.2
Delay discounting water rate 12 sec1.01.53.0-1.11.71.0-0.8
Delay discounting water rate 18 sec0.30.40.90.20.21.0-0.8
Delay discounting water rate 24 sec0.40.61.10.40.21.1-0.9
Delay discounting water rate 6 sec0.91.33.0-0.01.01.7-1.0
Locomotor activity0.20.30.70.40.10.9-0.6
Locomotor testing distance0.20.30.4-0.60.6-0.2-0.6
Locomotor testing rearing1.62.55.3-1.31.70.6-2.3
Light reinforcement 10.40.71.90.30.51.4-0.8
Light reinforcement 20.20.30.60.20.40.8-0.6
Reaction time number correct0.40.50.8-0.90.9-0.0-0.7
Reaction time mean minus median0.40.51.6-0.6-0.1-1.30.3
Reaction time mean minus median AUC0.30.30.9-0.60.2-0.9-0.2
Reaction time num false alarms2.43.46.7-0.91.91.6-2.6
Reaction time num false alarms AUC1.62.34.9-0.31.31.6-2.2
Reaction time trials correct on left0.40.50.8-0.90.9-0.0-0.7
Reaction time trials on left0.40.60.9-0.90.90.1-0.8
Reaction time mean0.00.00.10.3-0.00.2-0.0
Reaction time mean AUC0.00.00.10.2-0.10.2-0.0
Median of all reaction times0.10.10.40.30.20.6-0.2
Reaction time omissions0.91.23.8-0.40.80.5-1.9
Reaction time false alarm rate1.01.43.3-0.10.91.3-1.8
Reaction time premature initiation rate0.40.60.90.7-0.30.90.9
Reaction time premature initiations0.10.20.30.00.20.60.5
Std. dev. reaction times0.10.10.20.3-0.00.4-0.4
Reaction time trials completed0.40.60.9-0.90.90.1-0.8
Reaction time trials AUC0.40.50.8-0.80.90.0-0.8
Social response proportion1.11.12.9-0.81.00.4-1.7
Social responses1.82.36.20.30.51.7-2.5
Social time0.20.20.60.4-0.30.3-0.8
Conditioned locomotion2.42.85.4-1.11.91.1-2.3
Cocaine response after cond. corrected0.20.20.3-0.60.4-0.5-0.4
Cocaine response after cond. not corrected0.20.20.5-0.50.1-0.7-0.3
Cocaine response before conditioning0.20.20.30.3-0.5-0.60.3
Saline control response2.02.76.00.31.02.4-1.9
Condit. Reinf. active minus inactive responses2.22.84.8-0.51.61.8-2.2
Condit. Reinf. active-inactive response ratio2.02.13.9-0.21.42.0-1.6
Condit. Reinf. active responses2.53.46.4-0.21.52.2-2.5
Condit. Reinf. inactive responses0.50.61.4-0.30.70.6-1.2
Condit. Reinf. lever presses0.50.72.20.50.31.5-0.7
Condit. Reinf. lever reinforcers received2.13.05.2-0.41.62.0-2.3
Pavlov. Cond. lever latency1.31.85.1-0.4-0.8-2.31.2
Pavlov. Cond. magazine entry latency0.10.10.2-0.40.50.3-0.3
Pavlov. Cond. change in total contacts0.81.13.20.70.21.8-0.9
Pavlov. Cond. index score0.91.23.70.50.41.9-0.8
Pavlov. Cond. latency score0.70.92.50.20.61.6-0.8
Pavlov. Cond. lever contacts1.31.84.90.30.82.2-1.2
Pavlov. Cond. magazine entry number0.30.31.2-0.3-0.1-1.10.2
Pavlov. Cond. intertrial magazine entries0.20.20.4-0.60.5-0.40.2
Pavlov. Cond. lever-magazine prob. diff.0.70.92.80.50.31.7-0.7
Pavlov. Cond. response bias1.42.05.50.40.92.3-1.2
Conditioned reinforcement - actives0.30.31.00.30.31.00.0
Conditioned reinforcement - inactives4.65.28.3-2.02.91.2-2.6
Conditioned locomotion0.20.20.70.10.30.90.4
Intermittent access intake day 1-15 change1.00.92.40.11.01.6-0.6
Intermittent access intake escalation0.70.71.80.20.91.3-0.3
Intermittent access intake escalation 20.10.10.30.10.50.6-0.0
Intermitt. access day 1 inactive lever presses1.41.52.4-0.91.51.1-1.3
Intermitt. access day 15 inactive lever presses3.03.46.4-2.32.50.4-1.3
Intermitt. access escalation Index1.11.01.81.0-1.3-0.70.9
Intermittent access day 1 total infusions0.10.10.20.0-0.3-0.40.4
Intermittent access day 15 total infusions0.30.40.9-0.10.80.9-0.1
Intermittent access terminal intake (last 3 days)0.60.61.5-0.71.20.5-0.5
Intermittent access total infusions0.40.40.9-0.81.00.1-0.2
Intermittent access day 1 locomotion0.20.20.4-0.30.60.60.2
Intermittent access day 15 total locomotion1.82.03.8-1.42.00.7-1.3
Intermittent access total locomotion0.80.91.8-0.71.40.9-0.4
Intermittent access standard deviation0.10.10.30.10.30.5-0.3
Cocaine induced anxiety3.74.39.2-2.60.9-3.00.3
Post-drug Anxiety1.31.53.8-1.40.3-1.9-0.1
Baseline Anxiety0.70.71.51.1-0.41.20.0
Lifetime Intake0.20.30.5-0.40.70.4-0.4
Incentive Sensitization - Responses0.00.00.20.1-0.00.1-0.4
Incentive Sensitization - Breakpoint0.10.10.2-0.20.1-0.1-0.5
Progressive ratio test 1 active lever presses1.11.12.60.40.61.6-1.1
Progressive ratio test 1 breakpoint1.21.33.20.50.61.8-1.2
Progressive ratio test 1 inactive lever presses1.92.13.7-1.01.60.9-1.9
Progressive ratio test 2 active lever presses0.60.71.3-0.81.10.4-0.9
Progressive ratio test 2 breakpoint0.40.40.7-0.50.80.3-0.8
Progressive ratio test 2 inactive lever presses2.32.64.9-1.52.21.1-1.5
Total sessions with >9 infusions0.20.20.40.6-0.40.20.3
Short access day 1 total inactive lever presses0.10.10.2-0.20.50.5-0.0
Short access day 10 total inactive lever presses2.83.16.5-2.62.0-1.1-0.9
Short access day 1 total infusions0.00.00.00.0-0.0-0.00.0
Short access day 10 total infusions0.10.10.30.1-0.1-0.10.6
Short access total infusions0.00.00.00.2-0.10.1-0.1
Short access day 1 locomotion0.20.30.4-0.60.4-0.50.5
Short access day 10 total locomotion0.40.41.60.40.31.20.1
Short access total locomotion0.30.30.5-0.30.70.7-0.2
Compulsive drug intake1.41.43.30.5-1.1-0.91.8
One hour access (0.3 mA shock)0.40.51.1-0.41.10.8-0.2
One hour access (shock baseline)0.30.40.6-0.40.80.4-0.8
Number of responses in last shaping day0.00.00.00.0-0.1-0.2-0.2
Context. condit. distance diff. score1.82.24.5-1.32.11.0-1.2
Locomotion velocity, session 10.20.20.5-0.30.0-0.6-0.7
Locomotion distance, session 11.51.93.0-1.21.60.7-1.7
Locomotion velocity, session 20.10.10.20.1-0.4-0.30.1
Locomotion distance, session 22.43.56.7-1.12.01.4-2.6
Locomotion velocity, session 31.01.12.01.4-1.01.20.3
Locomotion distance, session 33.43.710.11.9-0.33.2-0.9
Stereotopy head waving bouts, day 32.12.65.1-2.31.3-1.7-0.6
Stereotopy head waving duration, day 30.91.12.7-1.20.3-1.60.2
Locomotion velocity, session 70.91.03.0-0.00.81.7-0.7
Locomotion distance, session 73.03.96.0-1.12.42.1-2.0
Stereotopy head waving bouts, day 70.30.40.60.7-0.80.20.4
Stereotopy head waving duration, day 70.81.01.91.0-1.4-0.41.0
Locomotion velocity, session 80.70.81.5-0.61.00.7-1.2
Locomotion distance, session 85.27.811.4-1.73.42.5-3.3
Degree of sensitization distance2.82.85.7-2.42.1-1.0-0.7
Degree of sensitization stereotypy1.51.63.21.8-1.31.10.5
Condit. Reinf. active minus inactive responses0.20.20.30.5-0.10.6-0.5
Condit. Reinf. active-inactive response ratio0.50.61.2-0.20.70.7-1.1
Condit. Reinf. active responses0.10.10.10.3-0.10.3-0.3
Condit. Reinf. inactive responses0.10.10.2-0.50.3-0.3-0.2
Incentive salience index mean0.20.20.5-0.20.50.4-0.7
Condit. Reinf. lever presses0.10.10.2-0.20.40.3-0.1
Time in familiar zone, hab. session 10.60.51.20.2-0.8-0.61.1
Time in novel zone, hab. session 11.31.32.1-1.01.50.3-1.4
Total zone transitions, hab. session 10.91.32.2-0.91.30.8-1.5
Total locomotion distance, hab. session 12.33.25.1-1.82.30.5-2.1
Locomotion velocity, hab. session 12.23.24.9-1.82.20.6-2.1
Time in familiar zone, hab. session 20.40.41.2-0.5-0.2-1.10.4
Time in novel zone, hab. session 20.40.41.20.50.21.1-0.4
Total zone transitions, hab. session 21.21.63.90.40.72.0-1.4
Total locomotion distance, hab. session 23.64.87.4-2.02.70.8-2.7
Locomotion velocity, hab. session 23.64.97.6-2.32.70.4-2.6
Novel to familiar place preference ratio0.40.50.9-1.00.9-0.4-0.2
Novelty place preference0.30.30.7-0.80.6-0.60.1
Time in novel zone, NPP test0.30.30.6-0.80.7-0.4-0.0
Total zone transitions, NPP test0.30.40.90.10.50.9-0.6
Total locomotion distance, NPP test3.65.08.3-2.12.90.9-2.5
Locomotion velocity, NPP test2.84.16.9-2.12.60.6-2.2
Pavlov. Cond. lever latency0.70.91.61.3-1.10.70.5
Pavlov. Cond. magazine entry latency0.60.81.5-0.81.20.4-1.0
Pavlov. Cond. change in total contacts0.50.51.0-0.81.00.1-0.5
Pavlov. Cond. index score0.40.50.9-0.90.9-0.2-0.6
Pavlov. Cond. latency score0.81.11.8-1.31.3-0.5-0.8
Pavlov. Cond. lever contacts0.60.71.1-1.01.1-0.2-0.8
Pavlov. Cond. magazine entry number0.20.20.6-0.5-0.0-0.80.1
Pavlov. Cond. intertrial magazine entries0.10.20.40.3-0.00.7-0.3
Pavlov. Cond. lever-magazine prob. diff.0.30.30.5-0.70.7-0.2-0.5
Pavlov. Cond. response bias0.20.20.4-0.10.60.6-0.5
Bone: apparent density1.32.22.8-0.61.61.7-1.7
Bone surface1.01.83.0-0.71.51.2-1.7
Bone volume1.22.02.9-0.81.71.3-1.7
Bone: connectivity density0.71.11.5-0.51.21.2-1.2
Bone: cortical apparent density0.30.41.01.0-0.80.10.1
Bone: cortical area1.32.03.90.20.92.0-1.8
Bone: cortical porosity3.13.36.12.0-2.5-0.31.7
Bone: cortical porosity2.93.15.52.2-2.30.31.5
Bone: cortical thickness0.30.51.30.50.10.8-1.1
Bone: cortical thickness0.10.20.30.6-0.40.40.1
Bone: cortical tissue density0.30.40.91.0-0.80.00.1
Bone: elastic displacement1.51.72.91.7-1.70.31.0
Bone: elastic work0.50.71.31.2-1.00.20.5
Bone: endosteal estimation0.51.02.3-0.41.11.5-0.8
Bone: endosteal perimeter1.32.74.7-0.41.52.2-1.9
Bone: final force1.62.75.20.11.32.3-2.0
Bone: final moment1.32.14.20.11.12.1-1.7
Bone: marrow area0.51.12.1-0.51.21.4-0.8
Bone: maximum diameter2.24.16.9-0.21.72.6-2.6
Bone: maximum force0.40.81.4-0.41.00.8-1.2
Bone: maximum moment0.20.40.7-0.40.80.5-0.9
Bone: minimum diameter0.50.92.00.20.61.4-1.1
Bone: periosteal estimation1.12.25.00.01.22.2-1.6
Bone: periosteal perimeter1.52.64.3-0.31.42.0-2.1
Bone: post-yield work0.40.61.3-0.7-0.1-1.10.7
Bone: stiffness1.11.73.4-0.71.31.0-1.8
Bone: tissue strength0.60.50.9-0.70.90.2-0.9
Bone: trabecular number1.52.34.5-0.31.52.1-1.5
Bone: trabecular spacing0.20.30.8-0.1-0.3-0.90.4
Bone: trabecular thickness0.50.61.1-0.20.70.8-1.0
Bone: trabecular tissue density1.21.63.0-0.71.41.0-1.7
Breakpoint value in progressive ratio session0.70.71.50.9-0.01.2-0.8
Distance traveled before self-admin3.63.85.7-0.72.02.2-2.4
Distance traveled after self-admin1.51.64.00.10.92.0-1.3
Delta time in closed arm before/after self-admin0.10.10.4-0.0-0.4-0.60.0
Delta time in open arm before/after self-admin0.90.81.4-0.41.21.1-0.6
Diff in mean of infusions in LGA sessions0.40.40.60.2-0.6-0.80.8
Extinction: sum of active levers before priming0.10.10.30.5-0.30.10.3
Active lever presses in extinction session 60.30.30.5-0.70.7-0.50.3
Delta distance traveled before/after self-admin0.40.50.70.9-0.9-0.00.7
Delta ambulatory time before/after self-admin1.82.02.90.7-1.6-1.41.7
Time in closed arm before self-admin0.50.61.7-0.1-0.2-0.71.3
Time in closed arm after self-admin1.61.72.70.9-1.6-1.01.4
Time in open arm before self-admin0.20.20.30.5-0.6-0.20.3
Time in open arm after self-admin1.31.42.7-1.31.60.7-0.9
Sum of active levers in priming session hrs 5-60.80.81.5-0.81.00.5-1.2
Time to tail flick, vehicle, before self-admin1.31.32.4-1.51.4-0.80.6
Time to tail flick, vehicle, after self-admin0.30.31.10.3-0.30.31.0
Time to tail flick, test, before self-admin0.50.50.60.8-0.70.8-0.4
Time to tail flick, test, after self-admin1.31.42.5-1.60.9-1.40.5
Delta time to tail flick, vehicle, before/after SA1.00.92.21.0-0.41.5-0.6
Delta time to tail flick, test, before/after SA1.81.63.1-1.81.4-1.10.3
Ambulatory time before self-admin2.02.14.60.01.32.1-1.4
Ambulatory time after self-admin0.70.82.20.80.11.5-0.6
Total heroin consumption1.31.53.9-0.10.81.2-2.0
Area under the delay curve0.10.10.20.1-0.4-0.50.4
Delay disc. indifference point, 0s delay2.52.75.5-0.0-1.5-2.31.8
Delay disc. indifference point, 16s delay0.20.20.4-0.1-0.2-0.60.6
Delay disc. indifference point, 2s delay0.00.00.1-0.2-0.1-0.3-0.1
Delay disc. indifference point, 24s delay0.50.51.2-0.2-0.5-1.10.6
Delay disc. indifference point, 4s delay0.30.30.60.8-0.80.10.3
Delay disc. indifference point, 8s delay0.40.40.60.6-0.8-0.20.8
Delay discount exponential model param0.10.20.3-0.20.50.5-0.3
Delay discount hyperbolic model param0.10.10.3-0.20.50.4-0.3
Fecal boli incidents, locomotor time 10.40.50.70.8-0.80.10.7
Change in fecal boli incidents, locomotor task0.00.00.0-0.10.0-0.2-0.0
Time >=10cm from walls, locomotor time 10.70.71.51.2-0.80.80.2
Bouts of movement, locomotor time 12.22.45.30.1-1.6-2.31.3
Total resting periods, locomotor time 12.22.44.30.4-1.9-2.11.3
Rest time, locomotor task time 10.30.40.80.4-0.9-0.60.3
Distance moved, locomotor task time 10.00.00.00.00.10.0-0.0
Vertical activity count, locomotor time 10.10.20.3-0.30.50.4-0.3
Time >=10cm from walls, locomotor time 20.10.10.40.3-0.00.60.2
Bouts of movement, locomotor time 21.31.42.61.2-1.6-0.41.2
Total resting periods, locomotor time 21.81.93.51.6-1.9-0.31.3
Rest time, locomotor task time 20.91.02.01.2-1.4-0.40.7
Distance moved, locomotor task time 20.80.91.8-1.41.1-0.5-0.6
Vertical activity count, locomotor time 21.01.12.0-1.41.4-0.0-0.7
Weight adjusted by age4.14.67.0-1.12.42.2-2.6
Seeking ratio, delayed vs. immediate footshock0.10.10.4-0.30.1-0.70.1
Locomotion in novel chamber0.20.30.90.40.11.00.2
Locomotion in novel chamber post-restriction0.80.91.91.1-0.41.4-0.6
Progressive ratio3.13.66.9-0.5-1.2-2.62.5
Food seeking constrained by brief footshock2.12.64.7-2.02.2-0.0-1.3
Seeking ratio, punishment vs. effort3.84.78.7-0.72.12.2-2.9
Run reversals in cocaine runway, females0.80.81.2-0.41.01.1-0.9
Run reversals in cocaine runway, males1.00.91.7-0.10.91.1-1.3
Latency to leave start box in cocaine runway0.60.71.8-0.1-0.8-1.40.4
Latency to leave start box in cocaine runway, F1.51.63.20.3-1.5-1.80.9
Latency to leave start box in cocaine runway, M1.00.91.5-1.21.1-0.1-1.0
Cd content in liver0.10.20.30.10.40.5-0.5
Co content in liver0.70.81.70.10.51.3-1.1
Cu content in liver0.60.81.80.70.01.3-0.9
Fe content in liver0.30.30.5-0.50.70.4-0.6
K content in liver0.10.10.20.2-0.20.1-0.4
Mg content in liver0.50.51.10.20.30.9-1.1
Mn content in liver0.60.71.60.60.11.3-1.0
Na content in liver0.20.20.5-0.70.3-0.5-0.4
Rb content in liver1.72.14.20.01.11.7-2.0
Se content in liver1.62.03.2-0.71.61.3-1.8
Sr content in liver0.70.62.30.40.21.50.1
Zn content in liver0.80.81.5-0.90.90.1-1.2