ENSRNOG00000062795

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000062795 0.09 0.05 1.8e-10 0.08 0.08 0.07 0.08 2.3e-09 2.9e-09 2.8e-08 7.5e-09
2 Liver gene expression ENSRNOG00000062795 0.07 0.04 1.4e-07 0.06 0.06 0.06 0.06 2.3e-07 1.0e-07 3.8e-07 2.5e-07
3 Liver intron excision ratio chr15:38096688:38097670 0.03 0.02 9.6e-03 0 0 0 0 2.6e-01 9.1e-02 8.1e-02 2.5e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail1.34.15.71.32.32.4
BMI without tail0.10.10.3-0.5-0.3-0.3
Body weight1.14.65.82.41.82.2
Epididymis fat weight0.10.30.7-0.80.40.2
Glucose0.10.20.4-0.20.60.2
Heart weight0.00.10.1-0.3-0.3-0.1
Left kidney weight1.02.98.32.90.20.5
Right kidney weight0.92.67.12.70.20.9
Tail length0.72.23.5-0.2-1.9-1.8
Length with tail0.31.23.21.8-0.5-0.1
Length without tail2.24.77.52.71.62.1
Liver weight, left1.21.92.21.31.41.5
Liver weight, right0.71.21.90.11.31.4
Parametrial fat weight1.32.55.3-2.3-0.6-1.4
Retroperitoneal fat weight0.30.92.6-1.60.2-0.4
Intraocular pressure4.36.19.4-1.0-2.8-3.1
Extensor digitorum longus weight4.719.031.02.24.65.6
Soleus weight1.13.24.3-1.21.92.1
Tibialis anterior weight4.615.925.42.63.95.0
Tibia length2.26.217.44.2-1.1-0.4
Number of licking bursts0.50.60.9-0.50.90.8
Food consumed during 24 hour testing period0.30.30.50.7-0.5-0.4
Times rat made contact with spout0.50.51.41.2-0.2-0.4
Mean time between licks in bursts2.83.85.6-1.1-2.4-2.2
Mean num. licks in bursts0.81.01.11.0-0.9-1.0
Std. dev. time between licks in bursts1.51.82.8-0.3-1.7-1.5
Water consumed over 24 hours0.70.81.81.30.40.6
Indifference point 0 sec0.50.81.71.3-0.7-0.4
Indifference point AUC1.21.43.6-1.90.90.2
Indifference point function ln k0.91.22.61.60.31.0
Indifference point function log k0.91.22.61.60.31.0
Delay discounting total patch changes 0 sec0.40.61.71.3-0.30.1
Delay discounting total patch changes 12 sec0.10.10.30.50.1-0.2
Delay discounting total patch changes 18 sec0.50.61.7-1.30.1-0.2
Delay discounting total patch changes 24 sec0.00.00.00.0-0.2-0.2
Delay discounting total patch changes 6 sec0.00.00.0-0.1-0.0-0.2
Delay discounting time to switch 0 sec0.10.10.20.3-0.4-0.5
Delay discounting water rate 0 sec0.61.01.50.61.01.2
Delay discounting water rate 12 sec0.40.61.10.50.71.0
Delay discounting water rate 18 sec2.12.84.90.81.62.2
Delay discounting water rate 24 sec0.30.40.70.20.90.6
Delay discounting water rate 6 sec0.50.81.8-0.00.81.3
Locomotor activity1.82.87.22.70.41.0
Locomotor testing distance1.32.24.42.1-1.2-0.8
Locomotor testing rearing5.28.19.12.9-3.0-2.6
Light reinforcement 10.10.20.70.80.0-0.1
Light reinforcement 20.40.61.7-1.30.10.1
Reaction time number correct0.50.81.20.1-1.0-1.1
Reaction time mean minus median0.40.51.11.0-0.5-0.3
Reaction time mean minus median AUC0.40.60.91.0-0.7-0.5
Reaction time num false alarms0.91.23.51.9-0.3-0.0
Reaction time num false alarms AUC0.60.92.71.6-0.10.1
Reaction time trials correct on left0.50.81.20.1-1.0-1.1
Reaction time trials on left0.71.01.50.1-1.2-1.2
Reaction time mean0.40.61.1-0.1-1.1-0.7
Reaction time mean AUC0.40.51.10.1-1.1-0.6
Median of all reaction times0.50.61.1-0.5-1.1-0.7
Reaction time omissions3.14.26.3-0.3-2.5-2.5
Reaction time false alarm rate0.71.01.81.30.70.8
Reaction time premature initiation rate0.30.40.60.40.80.7
Reaction time premature initiations0.00.00.10.30.2-0.0
Std. dev. reaction times0.30.40.70.1-0.9-0.7
Reaction time trials completed0.71.01.50.1-1.2-1.2
Reaction time trials AUC0.81.11.70.1-1.2-1.3
Social response proportion1.82.03.6-0.6-1.4-1.9
Social responses1.82.34.1-0.4-1.6-2.0
Social time2.93.85.82.4-1.8-1.5
Conditioned locomotion0.30.30.9-0.90.40.2
Cocaine response after cond. corrected3.84.37.3-2.71.81.5
Cocaine response after cond. not corrected3.23.55.8-2.41.61.4
Cocaine response before conditioning0.91.12.61.6-0.7-0.4
Saline control response0.20.20.4-0.1-0.6-0.4
Condit. Reinf. active minus inactive responses0.10.10.2-0.4-0.2-0.4
Condit. Reinf. active-inactive response ratio0.10.10.20.2-0.2-0.5
Condit. Reinf. active responses0.10.10.2-0.3-0.1-0.4
Condit. Reinf. inactive responses0.40.50.6-0.6-0.6-0.8
Condit. Reinf. lever presses1.52.03.92.0-1.2-0.9
Condit. Reinf. lever reinforcers received0.00.00.1-0.0-0.1-0.3
Pavlov. Cond. lever latency1.41.95.5-2.30.5-0.1
Pavlov. Cond. magazine entry latency1.31.52.01.21.01.4
Pavlov. Cond. change in total contacts1.01.32.51.60.31.2
Pavlov. Cond. index score1.21.53.31.80.41.1
Pavlov. Cond. latency score1.21.53.61.90.20.9
Pavlov. Cond. lever contacts1.42.05.22.3-0.8-0.2
Pavlov. Cond. magazine entry number0.80.91.3-0.8-0.9-1.1
Pavlov. Cond. intertrial magazine entries5.97.613.7-0.5-3.0-3.7
Pavlov. Cond. lever-magazine prob. diff.1.11.52.71.60.51.2
Pavlov. Cond. response bias1.21.64.42.10.10.6
Conditioned reinforcement - actives6.16.07.3-2.7-2.1-2.5
Conditioned reinforcement - inactives2.22.43.6-0.6-1.9-1.9
Conditioned locomotion2.42.98.4-2.90.1-0.4
Intermittent access intake day 1-15 change1.01.01.60.1-1.2-1.3
Intermittent access intake escalation0.80.81.3-0.3-1.0-1.2
Intermittent access intake escalation 20.60.60.8-0.6-0.9-0.8
Intermitt. access day 1 inactive lever presses1.41.52.2-0.2-1.5-1.5
Intermitt. access day 15 inactive lever presses0.91.02.10.7-1.4-0.8
Intermitt. access escalation Index0.10.10.2-0.40.0-0.3
Intermittent access day 1 total infusions0.80.92.5-1.60.40.2
Intermittent access day 15 total infusions1.41.52.6-1.6-0.8-1.2
Intermittent access terminal intake (last 3 days)1.21.32.6-1.6-0.7-0.9
Intermittent access total infusions1.21.43.9-2.0-0.0-0.4
Intermittent access day 1 locomotion0.50.50.6-0.60.80.8
Intermittent access day 15 total locomotion0.91.02.6-1.6-0.4-0.5
Intermittent access total locomotion0.30.30.8-0.90.30.3
Intermittent access standard deviation0.80.91.4-0.1-1.2-1.2
Cocaine induced anxiety0.30.30.90.9-0.3-0.2
Post-drug Anxiety1.92.14.62.2-1.0-0.7
Baseline Anxiety0.20.20.50.7-0.10.1
Lifetime Intake1.41.54.0-2.0-0.3-0.7
Incentive Sensitization - Responses4.24.26.5-0.6-2.4-2.5
Incentive Sensitization - Breakpoint4.74.77.4-0.4-2.6-2.7
Progressive ratio test 1 active lever presses0.60.61.1-1.10.70.4
Progressive ratio test 1 breakpoint0.60.61.0-1.00.80.4
Progressive ratio test 1 inactive lever presses1.41.51.8-1.1-1.3-1.3
Progressive ratio test 2 active lever presses2.12.33.0-1.5-1.3-1.7
Progressive ratio test 2 breakpoint1.61.72.7-0.9-1.3-1.7
Progressive ratio test 2 inactive lever presses2.12.43.4-0.7-1.8-1.8
Total sessions with >9 infusions1.51.61.9-1.4-1.3-1.2
Short access day 1 total inactive lever presses0.20.20.3-0.6-0.3-0.6
Short access day 10 total inactive lever presses0.50.50.8-0.5-0.8-0.9
Short access day 1 total infusions2.02.13.6-1.9-1.1-1.2
Short access day 10 total infusions0.80.91.1-1.01.00.7
Short access total infusions0.50.61.6-1.3-0.2-0.3
Short access day 1 locomotion0.30.30.5-0.7-0.6-0.3
Short access day 10 total locomotion0.20.30.50.50.30.7
Short access total locomotion0.10.10.10.1-0.40.0
Compulsive drug intake0.30.30.40.60.70.4
One hour access (0.3 mA shock)0.80.92.6-1.60.1-0.4
One hour access (shock baseline)1.51.73.8-2.0-0.6-1.0
Number of responses in last shaping day0.20.20.6-0.8-0.10.0
Context. condit. distance diff. score1.31.54.0-2.00.80.2
Locomotion velocity, session 10.30.41.11.00.10.1
Locomotion distance, session 10.60.81.81.3-0.5-0.6
Locomotion velocity, session 20.70.82.01.40.50.4
Locomotion distance, session 21.62.33.71.9-1.2-1.3
Locomotion velocity, session 30.40.51.51.20.00.2
Locomotion distance, session 30.20.20.30.40.50.5
Stereotopy head waving bouts, day 31.01.12.1-0.5-1.5-1.0
Stereotopy head waving duration, day 30.10.20.30.5-0.60.0
Locomotion velocity, session 70.20.30.7-0.30.1-0.9
Locomotion distance, session 70.81.11.5-1.2-0.6-1.2
Stereotopy head waving bouts, day 71.01.22.71.60.50.7
Stereotopy head waving duration, day 71.11.32.31.50.71.1
Locomotion velocity, session 80.30.30.60.50.80.5
Locomotion distance, session 80.00.10.2-0.00.0-0.4
Degree of sensitization distance2.62.63.7-1.9-1.1-1.7
Degree of sensitization stereotypy1.51.61.81.31.21.2
Condit. Reinf. active minus inactive responses1.11.33.51.9-0.3-0.4
Condit. Reinf. active-inactive response ratio0.20.20.3-0.1-0.6-0.5
Condit. Reinf. active responses1.01.23.71.9-0.0-0.1
Condit. Reinf. inactive responses0.30.41.21.10.10.1
Incentive salience index mean2.32.87.52.70.60.6
Condit. Reinf. lever presses2.83.77.92.81.21.3
Time in familiar zone, hab. session 10.30.20.4-0.60.50.3
Time in novel zone, hab. session 10.20.20.30.20.40.6
Total zone transitions, hab. session 10.40.61.00.51.00.8
Total locomotion distance, hab. session 10.00.00.00.10.2-0.0
Locomotion velocity, hab. session 10.10.10.40.60.1-0.1
Time in familiar zone, hab. session 20.40.41.3-1.10.2-0.0
Time in novel zone, hab. session 20.40.41.01.0-0.3-0.3
Total zone transitions, hab. session 20.71.02.21.50.50.6
Total locomotion distance, hab. session 20.50.61.11.00.70.6
Locomotion velocity, hab. session 20.81.01.81.30.80.8
Novel to familiar place preference ratio0.40.51.00.3-0.6-1.0
Novelty place preference0.70.81.30.8-0.7-1.1
Time in novel zone, NPP test0.90.91.30.9-0.7-1.1
Total zone transitions, NPP test0.40.61.81.40.20.1
Total locomotion distance, NPP test1.21.72.40.9-1.4-1.6
Locomotion velocity, NPP test1.01.42.20.7-1.3-1.5
Pavlov. Cond. lever latency1.41.72.4-1.6-1.1-1.3
Pavlov. Cond. magazine entry latency0.70.82.01.40.40.6
Pavlov. Cond. change in total contacts2.72.94.72.21.31.5
Pavlov. Cond. index score3.03.86.02.41.41.8
Pavlov. Cond. latency score2.43.15.52.41.21.5
Pavlov. Cond. lever contacts2.22.65.12.31.01.3
Pavlov. Cond. magazine entry number1.51.83.5-1.9-0.8-1.2
Pavlov. Cond. intertrial magazine entries0.10.10.20.4-0.2-0.0
Pavlov. Cond. lever-magazine prob. diff.3.44.36.32.51.62.0
Pavlov. Cond. response bias2.53.03.92.01.41.8
Bone: apparent density1.42.32.61.4-1.5-1.6
Bone surface0.91.62.01.4-1.1-1.2
Bone volume0.50.81.81.3-0.4-0.7
Bone: connectivity density3.35.17.21.1-2.7-2.7
Bone: cortical apparent density1.62.14.2-2.01.01.1
Bone: cortical area1.52.23.8-0.01.91.7
Bone: cortical porosity1.41.61.91.41.01.3
Bone: cortical porosity1.01.01.31.00.91.1
Bone: cortical thickness2.33.85.9-0.32.42.3
Bone: cortical thickness3.54.17.3-1.02.72.0
Bone: cortical tissue density1.62.14.2-2.11.01.1
Bone: elastic displacement0.40.40.6-0.4-0.8-0.7
Bone: elastic work0.20.20.60.8-0.1-0.0
Bone: endosteal estimation0.20.50.91.0-0.4-0.5
Bone: endosteal perimeter0.51.01.40.8-1.1-1.2
Bone: final force1.42.23.40.81.81.6
Bone: final moment1.01.72.11.11.51.4
Bone: marrow area0.20.50.80.9-0.4-0.6
Bone: maximum diameter0.71.32.1-0.51.51.2
Bone: maximum force1.52.64.10.82.01.8
Bone: maximum moment1.12.02.61.01.61.5
Bone: minimum diameter0.40.81.10.81.00.8
Bone: periosteal estimation0.10.30.50.30.70.5
Bone: periosteal perimeter0.10.10.20.50.30.2
Bone: post-yield work2.83.85.6-1.92.41.5
Bone: stiffness1.32.02.80.91.61.7
Bone: tissue strength1.11.11.7-0.2-1.3-1.2
Bone: trabecular number1.62.43.51.0-1.7-1.9
Bone: trabecular spacing3.44.46.1-1.52.22.5
Bone: trabecular thickness1.01.22.81.70.60.5
Bone: trabecular tissue density1.82.54.5-0.51.72.1
Breakpoint value in progressive ratio session0.70.81.3-0.21.21.1
Distance traveled before self-admin0.20.20.3-0.6-0.4-0.2
Distance traveled after self-admin0.40.41.1-1.10.30.3
Delta time in closed arm before/after self-admin0.10.10.20.5-0.2-0.2
Delta time in open arm before/after self-admin0.40.41.0-1.0-0.3-0.4
Diff in mean of infusions in LGA sessions1.31.52.61.60.81.1
Extinction: sum of active levers before priming0.20.20.7-0.80.1-0.0
Active lever presses in extinction session 60.30.30.3-0.6-0.5-0.5
Delta distance traveled before/after self-admin0.10.10.2-0.10.50.3
Delta ambulatory time before/after self-admin0.10.10.2-0.50.40.2
Time in closed arm before self-admin1.82.03.01.21.31.7
Time in closed arm after self-admin1.92.02.51.61.21.4
Time in open arm before self-admin1.21.32.4-0.1-1.2-1.5
Time in open arm after self-admin1.71.92.5-0.9-1.6-1.6
Sum of active levers in priming session hrs 5-60.40.41.1-1.0-0.2-0.4
Time to tail flick, vehicle, before self-admin1.31.32.31.50.81.1
Time to tail flick, vehicle, after self-admin0.60.70.90.50.90.9
Time to tail flick, test, before self-admin0.50.50.60.8-0.6-0.6
Time to tail flick, test, after self-admin3.23.34.6-1.0-2.1-2.1
Delta time to tail flick, vehicle, before/after SA0.20.20.2-0.5-0.3-0.5
Delta time to tail flick, test, before/after SA1.81.62.0-1.4-1.2-1.2
Ambulatory time before self-admin0.10.10.2-0.40.30.4
Ambulatory time after self-admin0.91.01.3-0.81.01.1
Total heroin consumption0.20.20.4-0.40.30.6
Area under the delay curve6.57.010.70.73.33.1
Delay disc. indifference point, 0s delay0.10.20.30.10.50.4
Delay disc. indifference point, 16s delay5.45.58.7-0.42.92.8
Delay disc. indifference point, 2s delay0.50.60.90.31.00.9
Delay disc. indifference point, 24s delay6.36.110.4-0.13.22.8
Delay disc. indifference point, 4s delay4.34.56.71.12.42.6
Delay disc. indifference point, 8s delay7.07.310.60.93.33.2
Delay discount exponential model param7.17.511.4-0.8-3.4-3.2
Delay discount hyperbolic model param6.56.910.3-0.8-3.2-3.2
Fecal boli incidents, locomotor time 10.20.30.3-0.50.60.4
Change in fecal boli incidents, locomotor task0.70.70.80.8-0.9-0.8
Time >=10cm from walls, locomotor time 11.81.92.11.4-1.4-1.2
Bouts of movement, locomotor time 10.50.51.11.10.60.3
Total resting periods, locomotor time 10.30.30.70.40.90.3
Rest time, locomotor task time 10.60.71.30.61.10.7
Distance moved, locomotor task time 10.91.01.2-0.9-1.1-1.0
Vertical activity count, locomotor time 10.70.81.5-1.2-0.8-0.2
Time >=10cm from walls, locomotor time 20.70.71.00.7-1.0-0.8
Bouts of movement, locomotor time 22.32.44.20.62.01.7
Total resting periods, locomotor time 23.03.25.20.82.31.9
Rest time, locomotor task time 21.92.24.00.92.01.4
Distance moved, locomotor task time 20.70.81.1-1.0-0.9-0.7
Vertical activity count, locomotor time 21.11.23.4-1.9-0.30.2
Weight adjusted by age1.21.33.82.0-0.40.2
Seeking ratio, delayed vs. immediate footshock0.10.10.20.40.20.2
Locomotion in novel chamber0.40.50.60.80.50.7
Locomotion in novel chamber post-restriction0.20.30.70.80.4-0.0
Progressive ratio0.10.10.10.1-0.20.4
Food seeking constrained by brief footshock1.31.63.5-1.90.90.8
Seeking ratio, punishment vs. effort0.60.71.0-1.00.90.6
Run reversals in cocaine runway, females0.10.10.1-0.2-0.2-0.3
Run reversals in cocaine runway, males1.51.52.20.61.41.5
Latency to leave start box in cocaine runway0.91.01.4-0.5-1.1-1.2
Latency to leave start box in cocaine runway, F0.40.40.7-0.0-0.8-0.8
Latency to leave start box in cocaine runway, M1.61.52.3-0.7-1.5-1.3
Cd content in liver0.80.91.30.4-1.1-1.1
Co content in liver2.02.43.9-0.22.01.8
Cu content in liver0.91.03.01.70.10.2
Fe content in liver1.31.62.40.4-1.5-1.6
K content in liver0.80.82.1-1.40.30.4
Mg content in liver0.70.71.8-1.4-0.3-0.3
Mn content in liver0.60.71.9-1.4-0.1-0.2
Na content in liver2.93.16.72.60.61.4
Rb content in liver1.21.51.7-1.2-1.3-1.2
Se content in liver0.20.20.30.5-0.6-0.3
Sr content in liver3.02.74.00.4-2.0-2.0
Zn content in liver1.41.64.22.00.10.7