ENSRNOG00000062516

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000062516 0.05 0.03 5.4e-03 0.02 0.01 0 0.01 9.3e-04 2.7e-02 1.4e-01 6.9e-03
2 NAcc gene expression ENSRNOG00000062516 0.19 0.09 1.5e-04 0.03 0.04 0.05 0.04 2.3e-03 4.4e-04 2.5e-04 3.5e-04
3 PL gene expression ENSRNOG00000062516 0.03 0.02 5.7e-03 0.03 0.03 0.02 0.02 2.3e-03 3.9e-03 1.8e-02 1.4e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.72.34.71.42.20.1
BMI without tail1.22.54.60.21.72.1
Body weight1.14.810.0-2.0-0.53.2
Epididymis fat weight0.51.22.20.11.21.5
Glucose0.60.92.40.60.1-1.5
Heart weight0.10.20.3-0.5-0.4-0.1
Left kidney weight0.20.71.9-0.1-1.4-0.4
Right kidney weight0.41.33.4-0.5-1.80.4
Tail length1.75.310.5-2.1-0.93.2
Length with tail2.69.611.0-3.3-2.73.2
Length without tail1.22.64.5-1.6-2.10.7
Liver weight, left1.82.94.3-2.1-1.81.1
Liver weight, right0.61.02.8-0.5-1.7-0.3
Parametrial fat weight1.12.25.0-0.8-1.02.2
Retroperitoneal fat weight0.82.56.8-0.80.02.6
Intraocular pressure0.71.01.90.51.41.0
Extensor digitorum longus weight4.116.426.04.25.1-2.3
Soleus weight0.20.60.8-0.8-0.60.9
Tibialis anterior weight1.34.310.01.73.20.3
Tibia length1.13.27.0-1.4-2.60.8
Number of licking bursts0.50.61.0-0.9-1.0-0.3
Food consumed during 24 hour testing period1.82.25.3-0.60.92.3
Times rat made contact with spout1.11.22.8-0.8-0.41.7
Mean time between licks in bursts0.20.30.4-0.6-0.50.6
Mean num. licks in bursts0.81.01.80.51.01.3
Std. dev. time between licks in bursts0.40.51.00.61.0-0.1
Water consumed over 24 hours0.20.30.80.00.10.9
Indifference point 0 sec2.54.07.4-2.1-0.62.7
Indifference point AUC0.70.81.6-0.90.11.2
Indifference point function ln k0.20.20.20.5-0.5-0.5
Indifference point function log k0.20.20.20.5-0.5-0.5
Delay discounting total patch changes 0 sec2.94.88.4-2.3-0.82.9
Delay discounting total patch changes 12 sec3.24.36.3-2.5-0.72.4
Delay discounting total patch changes 18 sec1.41.93.7-1.4-0.21.9
Delay discounting total patch changes 24 sec3.64.66.6-2.3-1.42.6
Delay discounting total patch changes 6 sec1.52.34.2-1.6-0.62.0
Delay discounting time to switch 0 sec0.30.50.80.90.5-0.7
Delay discounting water rate 0 sec1.11.74.5-0.80.12.1
Delay discounting water rate 12 sec0.40.61.00.4-1.0-0.7
Delay discounting water rate 18 sec0.81.12.7-0.8-1.60.2
Delay discounting water rate 24 sec0.60.91.7-0.9-1.30.0
Delay discounting water rate 6 sec0.20.20.6-0.1-0.80.3
Locomotor activity0.30.51.3-0.40.01.2
Locomotor testing distance0.81.43.5-0.50.71.9
Locomotor testing rearing0.91.42.90.61.71.0
Light reinforcement 10.10.20.40.10.70.4
Light reinforcement 20.20.30.7-0.20.10.8
Reaction time number correct0.60.82.3-0.3-1.5-0.4
Reaction time mean minus median0.71.01.40.91.2-0.8
Reaction time mean minus median AUC0.40.61.50.40.0-1.2
Reaction time num false alarms3.04.15.6-2.4-1.72.0
Reaction time num false alarms AUC3.44.76.3-2.5-1.82.2
Reaction time trials correct on left0.60.82.3-0.3-1.5-0.4
Reaction time trials on left0.60.92.4-0.4-1.5-0.4
Reaction time mean0.60.82.20.30.2-1.5
Reaction time mean AUC0.91.22.90.70.6-1.7
Median of all reaction times0.50.72.10.2-0.0-1.5
Reaction time omissions0.00.00.1-0.0-0.30.0
Reaction time false alarm rate1.82.63.6-1.9-0.71.9
Reaction time premature initiation rate0.50.71.90.20.41.4
Reaction time premature initiations0.40.61.4-0.2-0.51.2
Std. dev. reaction times0.50.60.90.60.8-1.0
Reaction time trials completed0.60.92.4-0.4-1.5-0.4
Reaction time trials AUC0.60.82.2-0.4-1.5-0.4
Social response proportion0.10.10.20.20.1-0.4
Social responses0.00.10.1-0.1-0.10.4
Social time0.00.00.10.0-0.20.3
Conditioned locomotion0.20.20.5-0.20.70.3
Cocaine response after cond. corrected0.60.61.7-0.4-1.3-0.3
Cocaine response after cond. not corrected1.41.54.0-0.6-2.0-0.4
Cocaine response before conditioning0.40.41.1-0.4-1.0-0.3
Saline control response1.01.33.10.21.80.9
Condit. Reinf. active minus inactive responses8.911.013.5-3.7-3.23.0
Condit. Reinf. active-inactive response ratio4.54.75.6-2.4-2.12.0
Condit. Reinf. active responses6.48.911.1-3.3-2.23.3
Condit. Reinf. inactive responses1.11.43.0-1.10.01.7
Condit. Reinf. lever presses1.11.53.5-1.0-0.41.9
Condit. Reinf. lever reinforcers received5.47.69.9-3.0-2.03.1
Pavlov. Cond. lever latency0.50.71.11.10.7-0.6
Pavlov. Cond. magazine entry latency1.01.12.80.3-0.7-1.7
Pavlov. Cond. change in total contacts0.60.81.6-1.3-0.70.5
Pavlov. Cond. index score0.30.40.8-0.7-0.9-0.1
Pavlov. Cond. latency score0.40.51.0-0.6-1.0-0.1
Pavlov. Cond. lever contacts0.30.40.5-0.7-0.40.7
Pavlov. Cond. magazine entry number1.11.43.4-0.50.71.8
Pavlov. Cond. intertrial magazine entries5.97.618.3-2.10.34.3
Pavlov. Cond. lever-magazine prob. diff.0.40.50.9-0.7-1.0-0.2
Pavlov. Cond. response bias0.30.40.5-0.7-0.70.2
Conditioned reinforcement - actives0.50.51.2-0.50.01.1
Conditioned reinforcement - inactives0.60.71.6-0.7-0.01.3
Conditioned locomotion1.72.14.6-1.2-0.42.2
Intermittent access intake day 1-15 change0.30.30.80.40.90.3
Intermittent access intake escalation0.50.51.00.71.00.1
Intermittent access intake escalation 20.50.50.80.30.90.7
Intermitt. access day 1 inactive lever presses3.84.15.6-2.4-1.52.1
Intermitt. access day 15 inactive lever presses1.11.22.90.20.81.7
Intermitt. access escalation Index2.22.04.4-0.2-1.2-2.1
Intermittent access day 1 total infusions1.01.11.3-1.1-0.81.1
Intermittent access day 15 total infusions0.30.30.9-0.20.40.9
Intermittent access terminal intake (last 3 days)1.31.53.3-1.00.01.8
Intermittent access total infusions2.02.24.5-1.4-0.52.1
Intermittent access day 1 locomotion3.03.16.1-1.7-0.62.5
Intermittent access day 15 total locomotion3.73.98.0-1.9-0.32.8
Intermittent access total locomotion5.15.813.4-2.0-0.33.7
Intermittent access standard deviation1.11.22.80.30.91.7
Cocaine induced anxiety0.10.10.30.6-0.2-0.1
Post-drug Anxiety0.20.20.50.7-0.2-0.1
Baseline Anxiety0.30.30.50.70.1-0.7
Lifetime Intake2.22.45.0-1.4-0.52.2
Incentive Sensitization - Responses3.13.14.7-1.9-0.92.2
Incentive Sensitization - Breakpoint3.13.14.4-2.0-1.02.1
Progressive ratio test 1 active lever presses4.24.35.6-2.4-1.42.4
Progressive ratio test 1 breakpoint4.34.46.8-2.3-1.12.6
Progressive ratio test 1 inactive lever presses3.73.95.7-2.4-1.12.2
Progressive ratio test 2 active lever presses4.24.48.2-2.1-0.92.9
Progressive ratio test 2 breakpoint4.55.09.6-2.1-1.03.1
Progressive ratio test 2 inactive lever presses3.33.87.8-1.9-0.42.8
Total sessions with >9 infusions0.50.50.8-0.9-0.60.7
Short access day 1 total inactive lever presses1.01.11.7-0.9-0.81.3
Short access day 10 total inactive lever presses0.30.30.5-0.00.70.7
Short access day 1 total infusions0.91.01.4-1.2-0.41.2
Short access day 10 total infusions2.93.27.8-1.3-0.22.8
Short access total infusions1.92.14.2-1.4-0.42.1
Short access day 1 locomotion1.82.05.0-0.90.02.2
Short access day 10 total locomotion5.96.516.5-1.70.44.1
Short access total locomotion2.92.97.2-1.10.52.7
Compulsive drug intake0.90.91.40.1-1.2-1.1
One hour access (0.3 mA shock)0.50.61.0-0.9-0.31.0
One hour access (shock baseline)0.70.81.7-0.60.61.3
Number of responses in last shaping day0.50.50.9-0.5-0.61.0
Context. condit. distance diff. score0.20.30.50.30.6-0.7
Locomotion velocity, session 11.41.52.7-0.8-1.01.7
Locomotion distance, session 10.70.91.3-0.6-1.01.1
Locomotion velocity, session 20.40.50.6-0.7-0.80.6
Locomotion distance, session 20.50.71.2-0.8-1.10.5
Locomotion velocity, session 30.20.20.50.1-0.7-0.4
Locomotion distance, session 30.80.91.8-0.8-1.30.2
Stereotopy head waving bouts, day 30.10.20.40.7-0.0-0.1
Stereotopy head waving duration, day 30.00.10.10.2-0.2-0.3
Locomotion velocity, session 70.40.50.91.00.7-0.2
Locomotion distance, session 70.00.00.1-0.20.10.0
Stereotopy head waving bouts, day 70.20.20.20.4-0.3-0.5
Stereotopy head waving duration, day 70.91.12.70.6-0.5-1.6
Locomotion velocity, session 80.30.30.8-0.9-0.40.3
Locomotion distance, session 80.00.10.2-0.4-0.1-0.2
Degree of sensitization distance0.20.20.3-0.30.60.4
Degree of sensitization stereotypy0.50.51.30.6-0.2-1.1
Condit. Reinf. active minus inactive responses1.51.72.9-1.4-0.41.7
Condit. Reinf. active-inactive response ratio0.40.40.7-0.9-0.10.7
Condit. Reinf. active responses2.02.54.0-1.8-0.52.0
Condit. Reinf. inactive responses1.61.92.4-1.5-1.01.5
Incentive salience index mean1.72.03.8-1.3-0.72.0
Condit. Reinf. lever presses0.20.20.6-0.2-0.10.8
Time in familiar zone, hab. session 10.30.30.5-0.70.30.6
Time in novel zone, hab. session 11.00.91.61.30.3-1.0
Total zone transitions, hab. session 10.20.30.9-0.2-0.31.0
Total locomotion distance, hab. session 11.11.64.4-0.3-0.72.1
Locomotion velocity, hab. session 11.62.35.4-0.8-1.02.3
Time in familiar zone, hab. session 20.60.61.0-1.00.10.9
Time in novel zone, hab. session 20.50.50.70.8-0.3-0.8
Total zone transitions, hab. session 20.00.00.10.00.10.3
Total locomotion distance, hab. session 20.50.61.7-0.00.41.3
Locomotion velocity, hab. session 20.50.61.9-0.20.11.4
Novel to familiar place preference ratio0.10.10.2-0.2-0.00.5
Novelty place preference0.00.00.10.00.00.3
Time in novel zone, NPP test0.00.00.00.0-0.10.2
Total zone transitions, NPP test0.40.60.9-0.6-1.00.7
Total locomotion distance, NPP test0.91.22.9-0.6-0.71.7
Locomotion velocity, NPP test0.60.82.3-0.4-0.21.5
Pavlov. Cond. lever latency1.62.13.81.11.0-2.0
Pavlov. Cond. magazine entry latency2.02.64.5-1.5-0.92.1
Pavlov. Cond. change in total contacts1.21.33.4-0.7-0.21.8
Pavlov. Cond. index score2.02.54.2-1.5-1.02.1
Pavlov. Cond. latency score1.72.13.4-1.4-1.01.8
Pavlov. Cond. lever contacts0.91.02.7-0.6-0.31.6
Pavlov. Cond. magazine entry number1.41.73.01.20.7-1.7
Pavlov. Cond. intertrial magazine entries0.91.12.1-1.5-0.11.1
Pavlov. Cond. lever-magazine prob. diff.1.92.34.0-1.4-1.02.0
Pavlov. Cond. response bias2.22.75.3-1.3-1.12.3
Bone: apparent density1.82.93.7-1.5-1.91.7
Bone surface7.713.614.0-3.7-3.73.6
Bone volume5.69.510.0-3.2-3.13.0
Bone: connectivity density3.04.75.1-2.1-2.32.1
Bone: cortical apparent density3.14.05.72.41.4-2.0
Bone: cortical area1.42.13.4-1.0-1.41.8
Bone: cortical porosity4.65.08.9-1.9-1.63.0
Bone: cortical porosity4.04.35.9-1.9-1.92.4
Bone: cortical thickness2.13.47.52.70.4-1.6
Bone: cortical thickness2.42.85.22.30.6-1.7
Bone: cortical tissue density3.24.26.02.41.6-2.0
Bone: elastic displacement0.50.60.90.9-0.4-0.9
Bone: elastic work0.30.40.90.7-0.10.9
Bone: endosteal estimation10.522.732.5-5.2-2.95.7
Bone: endosteal perimeter13.026.734.9-5.9-3.65.7
Bone: final force2.23.75.7-1.6-2.41.7
Bone: final moment2.23.75.5-1.5-2.31.8
Bone: marrow area10.322.231.8-5.1-2.95.6
Bone: maximum diameter5.710.412.0-3.5-3.13.1
Bone: maximum force2.95.05.6-2.0-2.32.4
Bone: maximum moment2.84.86.2-1.9-2.22.5
Bone: minimum diameter9.016.625.9-4.2-2.55.1
Bone: periosteal estimation7.715.823.1-4.0-2.94.8
Bone: periosteal perimeter6.310.411.2-3.3-3.23.1
Bone: post-yield work2.02.73.8-1.7-1.31.9
Bone: stiffness2.54.05.4-2.3-2.31.2
Bone: tissue strength0.70.71.6-0.4-1.3-0.6
Bone: trabecular number3.75.76.8-2.4-2.62.1
Bone: trabecular spacing1.62.02.91.11.7-1.4
Bone: trabecular thickness2.32.84.8-1.2-1.42.2
Bone: trabecular tissue density0.40.51.30.1-1.2-0.5
Breakpoint value in progressive ratio session0.30.30.7-0.8-0.10.5
Distance traveled before self-admin1.71.94.1-0.7-2.0-1.0
Distance traveled after self-admin1.31.42.5-1.1-1.6-0.7
Delta time in closed arm before/after self-admin0.80.82.0-0.6-1.40.4
Delta time in open arm before/after self-admin1.71.63.21.11.8-0.7
Diff in mean of infusions in LGA sessions1.82.02.51.61.3-1.3
Extinction: sum of active levers before priming0.20.20.4-0.40.60.4
Active lever presses in extinction session 60.70.71.7-0.40.31.3
Delta distance traveled before/after self-admin0.30.30.40.40.6-0.6
Delta ambulatory time before/after self-admin0.00.10.1-0.30.20.2
Time in closed arm before self-admin0.70.81.31.10.3-1.1
Time in closed arm after self-admin0.60.61.10.0-1.0-0.8
Time in open arm before self-admin0.40.50.80.1-0.8-0.9
Time in open arm after self-admin0.40.41.00.41.0-0.1
Sum of active levers in priming session hrs 5-60.50.51.00.20.7-1.0
Time to tail flick, vehicle, before self-admin1.71.74.1-1.0-2.0-0.2
Time to tail flick, vehicle, after self-admin1.21.21.9-1.4-1.10.9
Time to tail flick, test, before self-admin0.90.91.31.20.9-0.7
Time to tail flick, test, after self-admin0.10.10.1-0.0-0.4-0.3
Delta time to tail flick, vehicle, before/after SA1.11.12.5-0.30.81.6
Delta time to tail flick, test, before/after SA0.70.71.0-1.0-1.0-0.1
Ambulatory time before self-admin1.41.53.3-0.8-1.8-0.6
Ambulatory time after self-admin0.91.01.9-1.1-1.40.0
Total heroin consumption1.31.62.6-1.4-1.60.3
Area under the delay curve0.90.91.6-1.3-0.90.6
Delay disc. indifference point, 0s delay0.30.30.5-0.3-0.5-0.7
Delay disc. indifference point, 16s delay0.90.91.7-1.3-0.70.7
Delay disc. indifference point, 2s delay3.43.86.4-2.5-2.10.8
Delay disc. indifference point, 24s delay2.12.03.6-1.4-0.71.9
Delay disc. indifference point, 4s delay0.30.30.7-0.4-0.8-0.5
Delay disc. indifference point, 8s delay0.20.20.5-0.4-0.70.1
Delay discount exponential model param1.21.32.21.51.0-0.8
Delay discount hyperbolic model param1.21.22.21.51.0-0.6
Fecal boli incidents, locomotor time 10.10.10.1-0.4-0.2-0.2
Change in fecal boli incidents, locomotor task0.70.61.01.01.0-0.0
Time >=10cm from walls, locomotor time 12.32.35.6-0.2-1.1-2.4
Bouts of movement, locomotor time 11.71.93.01.51.7-0.8
Total resting periods, locomotor time 11.61.82.71.51.6-0.7
Rest time, locomotor task time 10.20.20.50.70.5-0.2
Distance moved, locomotor task time 10.40.51.0-0.7-0.21.0
Vertical activity count, locomotor time 10.90.91.2-1.0-1.10.8
Time >=10cm from walls, locomotor time 20.30.30.60.6-0.3-0.7
Bouts of movement, locomotor time 21.92.03.51.21.9-1.1
Total resting periods, locomotor time 22.02.23.01.31.7-1.4
Rest time, locomotor task time 22.22.56.31.10.2-2.5
Distance moved, locomotor task time 20.50.61.50.20.51.2
Vertical activity count, locomotor time 21.71.85.0-0.20.62.2
Weight adjusted by age0.40.41.20.0-0.4-1.1
Seeking ratio, delayed vs. immediate footshock0.70.82.00.61.40.4
Locomotion in novel chamber1.41.73.4-1.3-1.80.3
Locomotion in novel chamber post-restriction3.94.77.8-2.8-2.21.2
Progressive ratio1.01.11.8-1.3-1.3-0.0
Food seeking constrained by brief footshock1.92.35.8-1.1-0.12.4
Seeking ratio, punishment vs. effort0.70.91.90.30.81.4
Run reversals in cocaine runway, females2.62.64.22.01.9-0.3
Run reversals in cocaine runway, males0.30.30.50.4-0.7-0.5
Latency to leave start box in cocaine runway0.30.30.60.50.1-0.8
Latency to leave start box in cocaine runway, F0.50.51.10.3-0.6-1.0
Latency to leave start box in cocaine runway, M0.50.51.20.51.1-0.1
Cd content in liver2.32.54.11.41.1-2.0
Co content in liver1.11.31.61.01.3-1.2
Cu content in liver0.20.30.50.30.70.5
Fe content in liver0.10.10.2-0.00.0-0.4
K content in liver3.13.15.4-2.3-2.00.3
Mg content in liver0.30.30.5-0.7-0.3-0.6
Mn content in liver2.62.95.4-1.8-2.30.1
Na content in liver1.41.53.0-1.7-1.2-0.3
Rb content in liver1.41.85.00.3-0.6-2.2
Se content in liver0.81.02.7-0.2-0.6-1.6
Sr content in liver0.70.60.9-0.5-0.90.9
Zn content in liver2.73.05.8-1.8-2.40.1