Apof

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000062320 0.04 0.03 3.8e-04 0.01 0.01 0.02 0.01 1.2e-02 6.8e-03 3.4e-03 1.5e-02
2 Liver gene expression ENSRNOG00000062320 0.66 0.09 0.0e+00 0.58 0.63 0.64 0.64 3.8e-78 1.2e-90 1.7e-91 1.3e-91
3 Liver intron excision ratio chr7:700778:701021 0.6 0.16 0.0e+00 0.47 0.5 0.5 0.5 1.8e-58 8.4e-64 3.6e-64 6.4e-64
4 Liver intron excision ratio chr7:700778:701250 0.58 0.13 0.0e+00 0.41 0.45 0.44 0.44 7.7e-49 2.0e-54 6.2e-54 4.0e-53

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail8.828.730.5-5.5-5.3-5.35.2
BMI without tail1.63.43.6-1.8-1.8-1.91.9
Body weight1.46.06.8-2.3-2.4-2.52.6
Epididymis fat weight0.10.20.20.40.50.5-0.5
Glucose2.13.23.5-1.7-1.8-1.81.9
Heart weight0.00.10.1-0.2-0.4-0.20.1
Left kidney weight0.10.20.4-0.1-0.4-0.50.6
Right kidney weight0.20.50.70.90.60.7-0.7
Tail length5.416.217.84.24.14.0-3.8
Length with tail1.97.18.72.92.72.6-2.3
Length without tail0.10.20.3-0.3-0.4-0.50.5
Liver weight, left1.82.93.1-1.7-1.8-1.71.6
Liver weight, right1.11.92.4-1.3-1.3-1.41.5
Parametrial fat weight0.00.10.20.10.40.3-0.4
Retroperitoneal fat weight2.79.09.8-2.9-2.9-3.03.1
Intraocular pressure0.40.60.80.60.80.8-0.9
Extensor digitorum longus weight6.024.225.0-5.0-4.9-4.94.8
Soleus weight7.120.721.3-4.4-4.5-4.64.6
Tibialis anterior weight1.44.96.0-1.9-2.2-2.22.5
Tibia length1.23.54.02.02.01.8-1.7
Number of licking bursts3.54.24.8-2.2-2.0-2.01.9
Food consumed during 24 hour testing period0.50.60.6-0.8-0.7-0.80.8
Times rat made contact with spout1.11.21.3-1.1-1.1-1.11.1
Mean time between licks in bursts0.91.31.91.01.01.2-1.4
Mean num. licks in bursts0.91.11.31.21.01.0-0.9
Std. dev. time between licks in bursts0.40.50.70.80.60.7-0.7
Water consumed over 24 hours0.91.11.1-1.0-1.1-1.11.0
Indifference point 0 sec4.36.97.1-2.6-2.7-2.72.5
Indifference point AUC0.70.80.90.90.80.9-1.0
Indifference point function ln k0.20.30.3-0.6-0.6-0.60.5
Indifference point function log k0.20.30.3-0.6-0.6-0.60.5
Delay discounting total patch changes 0 sec4.06.67.0-2.6-2.6-2.62.4
Delay discounting total patch changes 12 sec1.92.62.8-1.7-1.7-1.61.5
Delay discounting total patch changes 18 sec0.00.00.1-0.2-0.3-0.20.1
Delay discounting total patch changes 24 sec0.60.70.9-0.7-0.8-0.81.0
Delay discounting total patch changes 6 sec2.23.33.6-1.8-1.9-1.81.7
Delay discounting time to switch 0 sec0.20.30.6-0.4-0.4-0.60.8
Delay discounting water rate 0 sec0.60.91.1-1.1-1.0-0.90.7
Delay discounting water rate 12 sec0.91.31.7-1.3-1.2-1.11.0
Delay discounting water rate 18 sec0.00.00.0-0.10.10.0-0.1
Delay discounting water rate 24 sec1.21.72.4-1.6-1.3-1.31.1
Delay discounting water rate 6 sec0.30.40.60.60.60.7-0.8
Locomotor activity4.06.38.52.92.62.4-2.0
Locomotor testing distance1.42.33.21.81.51.4-1.3
Locomotor testing rearing0.00.00.00.20.10.00.1
Light reinforcement 13.76.87.52.72.62.6-2.5
Light reinforcement 21.11.51.71.11.31.2-1.2
Reaction time number correct0.91.31.6-1.3-1.1-1.11.1
Reaction time mean minus median1.92.42.91.71.71.5-1.3
Reaction time mean minus median AUC1.82.33.21.81.61.4-1.2
Reaction time num false alarms0.70.91.2-0.9-0.9-1.01.1
Reaction time num false alarms AUC0.81.11.4-0.9-1.0-1.01.2
Reaction time trials correct on left0.91.31.6-1.3-1.1-1.11.1
Reaction time trials on left0.91.31.5-1.2-1.1-1.11.1
Reaction time mean1.31.81.91.31.31.3-1.4
Reaction time mean AUC0.50.70.80.80.80.8-0.9
Median of all reaction times0.60.81.00.90.80.9-1.0
Reaction time omissions0.00.00.0-0.1-0.1-0.0-0.1
Reaction time false alarm rate0.10.20.3-0.3-0.4-0.40.6
Reaction time premature initiation rate1.52.02.21.41.51.4-1.3
Reaction time premature initiations0.40.60.70.70.90.8-0.8
Std. dev. reaction times0.91.31.51.21.21.1-1.1
Reaction time trials completed0.91.31.5-1.2-1.1-1.11.1
Reaction time trials AUC1.01.41.7-1.3-1.2-1.21.1
Social response proportion1.01.11.21.11.11.0-0.9
Social responses10.213.214.33.83.83.6-3.4
Social time1.11.41.8-1.1-1.1-1.21.4
Conditioned locomotion0.91.11.4-1.2-0.9-1.01.0
Cocaine response after cond. corrected2.32.63.4-1.9-1.6-1.51.4
Cocaine response after cond. not corrected2.52.73.5-1.9-1.7-1.61.5
Cocaine response before conditioning0.50.60.80.90.80.8-0.6
Saline control response0.40.50.7-0.7-0.7-0.70.8
Condit. Reinf. active minus inactive responses2.12.53.11.41.61.6-1.8
Condit. Reinf. active-inactive response ratio0.50.60.80.50.70.8-0.9
Condit. Reinf. active responses1.42.02.31.31.41.4-1.5
Condit. Reinf. inactive responses0.30.40.50.70.60.6-0.6
Condit. Reinf. lever presses2.94.04.31.92.02.0-2.1
Condit. Reinf. lever reinforcers received1.01.51.81.11.21.2-1.3
Pavlov. Cond. lever latency1.92.53.0-1.7-1.6-1.51.5
Pavlov. Cond. magazine entry latency2.83.23.41.81.81.8-1.7
Pavlov. Cond. change in total contacts0.81.11.31.11.01.0-1.0
Pavlov. Cond. index score2.43.13.31.81.71.7-1.7
Pavlov. Cond. latency score2.53.23.71.91.81.8-1.7
Pavlov. Cond. lever contacts1.62.22.41.51.51.4-1.4
Pavlov. Cond. magazine entry number2.43.03.1-1.8-1.7-1.71.7
Pavlov. Cond. intertrial magazine entries1.01.31.6-1.1-1.1-1.11.3
Pavlov. Cond. lever-magazine prob. diff.2.53.23.41.91.81.8-1.8
Pavlov. Cond. response bias2.43.43.51.91.81.8-1.8
Conditioned reinforcement - actives0.00.00.0-0.0-0.1-0.0-0.1
Conditioned reinforcement - inactives1.51.71.9-1.4-1.4-1.31.1
Conditioned locomotion2.42.93.71.61.61.7-1.9
Intermittent access intake day 1-15 change0.20.20.20.30.30.4-0.5
Intermittent access intake escalation0.00.00.10.10.20.2-0.3
Intermittent access intake escalation 20.50.50.70.50.70.7-0.8
Intermitt. access day 1 inactive lever presses0.00.00.10.10.10.1-0.3
Intermitt. access day 15 inactive lever presses0.80.81.10.80.90.9-1.0
Intermitt. access escalation Index0.00.00.10.30.00.0-0.1
Intermittent access day 1 total infusions0.40.40.5-0.7-0.7-0.70.6
Intermittent access day 15 total infusions0.20.30.3-0.6-0.6-0.50.3
Intermittent access terminal intake (last 3 days)0.30.30.4-0.5-0.6-0.60.4
Intermittent access total infusions0.50.60.7-0.8-0.8-0.80.6
Intermittent access day 1 locomotion0.00.00.00.0-0.0-0.00.1
Intermittent access day 15 total locomotion0.30.30.40.60.50.5-0.7
Intermittent access total locomotion0.20.30.30.60.50.5-0.5
Intermittent access standard deviation0.10.10.10.20.20.3-0.4
Cocaine induced anxiety1.71.92.01.41.41.4-1.3
Post-drug Anxiety0.30.40.60.70.60.6-0.5
Baseline Anxiety0.00.00.0-0.0-0.1-0.10.1
Lifetime Intake1.41.51.7-1.2-1.3-1.31.1
Incentive Sensitization - Responses0.10.10.10.20.20.3-0.3
Incentive Sensitization - Breakpoint0.10.10.20.40.30.3-0.4
Progressive ratio test 1 active lever presses1.81.81.9-1.3-1.4-1.41.4
Progressive ratio test 1 breakpoint1.92.02.1-1.3-1.4-1.41.5
Progressive ratio test 1 inactive lever presses0.00.00.1-0.1-0.3-0.20.1
Progressive ratio test 2 active lever presses0.70.80.9-0.9-0.9-0.90.8
Progressive ratio test 2 breakpoint0.20.20.3-0.4-0.5-0.50.5
Progressive ratio test 2 inactive lever presses0.40.40.6-0.6-0.7-0.70.6
Total sessions with >9 infusions0.40.50.6-0.6-0.8-0.70.6
Short access day 1 total inactive lever presses0.00.00.1-0.2-0.2-0.20.0
Short access day 10 total inactive lever presses0.00.00.0-0.1-0.1-0.1-0.0
Short access day 1 total infusions1.21.31.6-1.0-1.3-1.21.1
Short access day 10 total infusions1.01.11.3-1.1-1.1-1.10.9
Short access total infusions2.22.42.7-1.4-1.6-1.61.5
Short access day 1 locomotion0.00.00.10.30.00.1-0.1
Short access day 10 total locomotion1.61.72.31.21.21.3-1.5
Short access total locomotion0.10.10.30.50.30.3-0.3
Compulsive drug intake0.20.20.3-0.6-0.4-0.50.4
One hour access (0.3 mA shock)0.50.60.8-0.9-0.8-0.80.6
One hour access (shock baseline)0.10.10.2-0.5-0.4-0.40.2
Number of responses in last shaping day0.80.81.10.90.80.9-1.0
Context. condit. distance diff. score0.20.30.3-0.5-0.6-0.50.6
Locomotion velocity, session 10.10.10.20.0-0.2-0.30.4
Locomotion distance, session 10.10.20.40.60.40.3-0.3
Locomotion velocity, session 21.11.31.91.41.11.1-1.0
Locomotion distance, session 22.73.94.92.22.01.9-1.8
Locomotion velocity, session 35.66.57.02.62.52.5-2.5
Locomotion distance, session 30.10.10.20.40.30.3-0.2
Stereotopy head waving bouts, day 36.27.57.72.72.72.7-2.8
Stereotopy head waving duration, day 33.94.75.32.12.12.2-2.3
Locomotion velocity, session 70.10.10.10.30.20.3-0.3
Locomotion distance, session 70.10.10.2-0.4-0.3-0.20.1
Stereotopy head waving bouts, day 70.91.01.71.31.01.0-0.7
Stereotopy head waving duration, day 70.70.91.61.30.90.9-0.5
Locomotion velocity, session 81.31.62.51.61.21.2-1.0
Locomotion distance, session 80.40.60.70.90.70.7-0.7
Degree of sensitization distance0.70.70.9-0.9-0.8-0.80.7
Degree of sensitization stereotypy0.10.10.30.1-0.2-0.30.5
Condit. Reinf. active minus inactive responses2.22.42.61.61.51.6-1.6
Condit. Reinf. active-inactive response ratio0.20.20.30.50.50.5-0.5
Condit. Reinf. active responses3.13.74.22.01.81.9-1.9
Condit. Reinf. inactive responses1.61.92.31.51.41.4-1.3
Incentive salience index mean1.41.62.01.41.21.3-1.2
Condit. Reinf. lever presses0.20.30.70.80.50.5-0.3
Time in familiar zone, hab. session 15.95.55.82.32.42.4-2.4
Time in novel zone, hab. session 14.03.94.2-1.9-2.0-2.02.0
Total zone transitions, hab. session 10.50.71.01.00.80.8-0.7
Total locomotion distance, hab. session 11.72.43.31.81.51.5-1.4
Locomotion velocity, hab. session 11.92.73.61.91.61.6-1.5
Time in familiar zone, hab. session 25.45.76.62.22.42.4-2.6
Time in novel zone, hab. session 26.06.06.5-2.3-2.5-2.52.5
Total zone transitions, hab. session 20.40.50.7-0.4-0.7-0.80.8
Total locomotion distance, hab. session 20.30.40.70.80.60.6-0.5
Locomotion velocity, hab. session 20.40.50.90.90.70.7-0.6
Novel to familiar place preference ratio3.03.23.9-1.4-1.9-1.82.0
Novelty place preference2.02.12.5-1.1-1.5-1.51.6
Time in novel zone, NPP test2.72.83.3-1.4-1.8-1.71.8
Total zone transitions, NPP test0.20.30.5-0.4-0.5-0.60.7
Total locomotion distance, NPP test0.00.00.10.1-0.1-0.20.2
Locomotion velocity, NPP test0.00.10.20.40.20.2-0.1
Pavlov. Cond. lever latency0.00.10.1-0.3-0.1-0.20.3
Pavlov. Cond. magazine entry latency1.72.22.81.31.41.5-1.7
Pavlov. Cond. change in total contacts0.20.20.4-0.5-0.6-0.40.3
Pavlov. Cond. index score0.50.60.70.80.70.8-0.9
Pavlov. Cond. latency score0.50.60.70.90.70.8-0.8
Pavlov. Cond. lever contacts0.00.00.10.2-0.00.1-0.1
Pavlov. Cond. magazine entry number0.60.81.0-0.8-0.8-0.91.0
Pavlov. Cond. intertrial magazine entries0.00.10.10.30.20.2-0.1
Pavlov. Cond. lever-magazine prob. diff.0.60.81.00.90.80.9-1.0
Pavlov. Cond. response bias0.81.01.21.00.91.0-1.1
Bone: apparent density0.00.00.10.2-0.1-0.20.3
Bone surface0.10.20.60.80.20.20.0
Bone volume0.00.10.30.50.0-0.00.2
Bone: connectivity density0.00.00.00.20.0-0.10.2
Bone: cortical apparent density1.72.22.8-1.7-1.5-1.51.2
Bone: cortical area1.01.51.7-1.1-1.2-1.31.3
Bone: cortical porosity0.00.00.00.1-0.00.0-0.1
Bone: cortical porosity0.10.10.2-0.2-0.5-0.40.3
Bone: cortical thickness1.62.72.9-1.7-1.6-1.71.6
Bone: cortical thickness0.91.01.1-1.1-1.0-1.01.0
Bone: cortical tissue density1.21.52.1-1.4-1.3-1.21.0
Bone: elastic displacement0.00.00.0-0.10.00.0-0.1
Bone: elastic work0.60.80.9-0.9-0.8-0.90.9
Bone: endosteal estimation0.81.61.8-1.1-1.3-1.31.3
Bone: endosteal perimeter0.10.20.30.50.30.5-0.6
Bone: final force3.04.95.8-2.0-2.1-2.32.4
Bone: final moment2.84.75.6-1.9-2.1-2.22.4
Bone: marrow area0.71.41.6-1.1-1.3-1.21.3
Bone: maximum diameter0.20.30.50.70.50.5-0.5
Bone: maximum force3.25.66.3-2.2-2.3-2.42.5
Bone: maximum moment3.15.46.2-2.2-2.2-2.42.5
Bone: minimum diameter0.30.50.6-0.6-0.8-0.70.7
Bone: periosteal estimation1.12.32.5-1.4-1.6-1.61.6
Bone: periosteal perimeter0.00.00.1-0.1-0.3-0.20.1
Bone: post-yield work0.50.71.1-0.6-0.7-0.81.0
Bone: stiffness5.28.39.4-2.7-2.8-3.03.1
Bone: tissue strength5.14.95.1-2.3-2.2-2.22.2
Bone: trabecular number0.61.01.41.21.00.9-0.7
Bone: trabecular spacing0.20.30.6-0.8-0.5-0.40.1
Bone: trabecular thickness0.10.10.30.2-0.3-0.40.5
Bone: trabecular tissue density6.79.410.3-3.2-3.1-3.12.9
Breakpoint value in progressive ratio session2.32.62.71.51.61.6-1.7
Distance traveled before self-admin1.11.21.21.11.11.1-1.1
Distance traveled after self-admin0.20.20.40.30.50.5-0.6
Delta time in closed arm before/after self-admin0.80.71.0-1.0-0.9-0.80.7
Delta time in open arm before/after self-admin1.41.32.1-1.0-1.0-1.11.4
Diff in mean of infusions in LGA sessions2.32.62.81.51.61.6-1.7
Extinction: sum of active levers before priming3.43.43.71.71.91.9-1.8
Active lever presses in extinction session 61.51.41.51.21.21.2-1.1
Delta distance traveled before/after self-admin0.00.00.1-0.3-0.2-0.20.1
Delta ambulatory time before/after self-admin0.00.10.1-0.3-0.2-0.20.1
Time in closed arm before self-admin0.10.10.2-0.4-0.3-0.40.4
Time in closed arm after self-admin0.40.40.5-0.7-0.7-0.60.4
Time in open arm before self-admin0.20.30.50.40.40.5-0.7
Time in open arm after self-admin1.11.31.4-1.1-1.1-1.11.2
Sum of active levers in priming session hrs 5-60.40.40.40.60.60.6-0.6
Time to tail flick, vehicle, before self-admin1.31.31.61.11.01.1-1.3
Time to tail flick, vehicle, after self-admin0.30.30.30.60.60.5-0.5
Time to tail flick, test, before self-admin0.90.91.41.20.90.9-0.7
Time to tail flick, test, after self-admin0.10.10.10.30.20.2-0.2
Delta time to tail flick, vehicle, before/after SA0.70.70.9-0.8-0.7-0.81.0
Delta time to tail flick, test, before/after SA0.10.10.10.10.30.3-0.4
Ambulatory time before self-admin0.30.30.40.60.60.6-0.6
Ambulatory time after self-admin0.00.00.10.10.20.2-0.3
Total heroin consumption2.73.23.31.81.81.8-1.8
Area under the delay curve0.00.00.0-0.0-0.0-0.10.2
Delay disc. indifference point, 0s delay1.11.21.5-0.9-1.1-1.11.2
Delay disc. indifference point, 16s delay0.30.30.30.50.50.5-0.5
Delay disc. indifference point, 2s delay0.20.20.3-0.3-0.4-0.40.5
Delay disc. indifference point, 24s delay0.20.20.4-0.4-0.4-0.50.6
Delay disc. indifference point, 4s delay0.40.40.50.70.60.6-0.5
Delay disc. indifference point, 8s delay0.10.10.1-0.3-0.2-0.20.3
Delay discount exponential model param0.00.00.0-0.1-0.0-0.0-0.1
Delay discount hyperbolic model param0.00.00.10.10.20.2-0.3
Fecal boli incidents, locomotor time 10.70.70.9-1.0-0.8-0.80.9
Change in fecal boli incidents, locomotor task0.50.50.70.90.70.6-0.6
Time >=10cm from walls, locomotor time 10.60.60.7-0.7-0.8-0.80.8
Bouts of movement, locomotor time 10.50.50.60.60.70.7-0.8
Total resting periods, locomotor time 11.21.31.41.11.11.2-1.2
Rest time, locomotor task time 10.50.50.60.70.70.7-0.7
Distance moved, locomotor task time 10.70.70.8-0.8-0.9-0.90.8
Vertical activity count, locomotor time 11.41.41.6-1.2-1.3-1.21.1
Time >=10cm from walls, locomotor time 21.31.41.5-1.2-1.2-1.21.1
Bouts of movement, locomotor time 20.20.30.50.70.50.5-0.4
Total resting periods, locomotor time 20.20.20.40.60.40.4-0.3
Rest time, locomotor task time 20.00.00.10.30.20.2-0.0
Distance moved, locomotor task time 20.00.00.1-0.3-0.2-0.20.1
Vertical activity count, locomotor time 21.41.51.6-1.3-1.2-1.21.2
Weight adjusted by age0.00.00.0-0.2-0.1-0.0-0.0
Seeking ratio, delayed vs. immediate footshock1.31.41.61.31.11.2-1.3
Locomotion in novel chamber0.30.40.6-0.7-0.7-0.60.5
Locomotion in novel chamber post-restriction3.84.64.92.12.12.2-2.2
Progressive ratio1.31.61.6-1.3-1.2-1.31.3
Food seeking constrained by brief footshock2.02.52.61.51.61.6-1.6
Seeking ratio, punishment vs. effort2.83.43.61.81.81.9-1.9
Run reversals in cocaine runway, females2.12.12.41.31.41.5-1.5
Run reversals in cocaine runway, males2.42.42.61.61.41.5-1.6
Latency to leave start box in cocaine runway0.10.10.20.1-0.1-0.30.5
Latency to leave start box in cocaine runway, F0.20.20.4-0.1-0.4-0.40.6
Latency to leave start box in cocaine runway, M0.00.00.0-0.00.2-0.10.1
Cd content in liver0.40.40.6-0.7-0.7-0.60.5
Co content in liver1.31.51.91.11.21.2-1.4
Cu content in liver1.11.31.6-1.2-1.3-1.20.9
Fe content in liver0.60.70.8-0.9-0.9-0.80.7
K content in liver0.50.50.60.80.70.7-0.6
Mg content in liver0.30.30.50.70.50.6-0.5
Mn content in liver0.30.40.70.80.50.6-0.5
Na content in liver0.00.10.1-0.2-0.2-0.20.3
Rb content in liver0.70.81.0-0.9-1.0-0.90.8
Se content in liver0.10.10.10.30.30.3-0.4
Sr content in liver0.10.10.10.20.30.3-0.3
Zn content in liver2.02.22.51.31.51.5-1.6