Rbm4b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 LHb gene expression ENSRNOG00000061795 0.22 0.14 9.6e-03 0.09 0.07 0.06 0.07 4.2e-03 1.0e-02 2.0e-02 8.6e-03
2 Liver gene expression ENSRNOG00000061795 0.04 0.03 1.4e-03 0.02 0 0 0 2.3e-03 2.9e-01 2.6e-01 1.4e-01
3 Liver intron excision ratio chr1:202049074:202054060 0.04 0.03 3.8e-03 0 0 0 -0 3.7e-01 1.7e-01 2.3e-01 7.9e-01
4 Liver intron excision ratio chr1:202054730:202057424 0.04 0.03 4.4e-03 0 0 0 0 2.1e-01 8.2e-02 2.3e-01 3.6e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail4.614.818.9-4.3-2.54.1-4.2
BMI without tail1.93.95.8-2.4-1.22.0-2.1
Body weight3.113.216.7-2.4-3.74.1-4.0
Epididymis fat weight1.63.75.50.42.3-2.22.1
Glucose0.81.23.0-1.01.7-0.70.6
Heart weight1.21.82.60.01.5-1.61.5
Left kidney weight0.92.63.11.51.4-1.71.8
Right kidney weight0.61.83.31.80.7-1.21.3
Tail length0.30.82.21.5-0.9-0.00.1
Length with tail1.03.67.70.5-2.81.9-1.7
Length without tail1.73.85.8-0.5-2.42.2-2.1
Liver weight, left0.20.30.40.40.4-0.60.6
Liver weight, right0.10.20.40.10.7-0.50.4
Parametrial fat weight1.12.24.4-0.52.1-1.51.4
Retroperitoneal fat weight3.411.218.60.84.3-3.63.5
Intraocular pressure1.41.92.71.61.1-1.41.4
Extensor digitorum longus weight5.421.732.4-2.0-5.75.1-4.9
Soleus weight4.513.218.72.24.3-3.83.8
Tibialis anterior weight6.020.841.4-0.3-6.44.7-4.5
Tibia length0.41.01.71.1-1.30.9-0.7
Number of licking bursts0.30.30.4-0.3-0.50.7-0.6
Food consumed during 24 hour testing period0.20.20.70.80.3-0.20.2
Times rat made contact with spout0.81.01.2-1.1-0.71.1-1.1
Mean time between licks in bursts0.10.10.2-0.3-0.50.4-0.4
Mean num. licks in bursts0.10.10.2-0.40.4-0.20.1
Std. dev. time between licks in bursts0.40.50.70.80.3-0.80.8
Water consumed over 24 hours0.70.81.1-0.7-0.71.1-1.1
Indifference point 0 sec0.00.10.1-0.30.3-0.0-0.0
Indifference point AUC2.53.04.7-0.6-2.21.9-1.8
Indifference point function ln k7.510.614.01.73.7-3.63.5
Indifference point function log k7.510.614.01.73.7-3.63.5
Delay discounting total patch changes 0 sec0.00.00.00.10.2-0.20.2
Delay discounting total patch changes 12 sec4.35.87.2-1.6-2.52.7-2.6
Delay discounting total patch changes 18 sec1.01.31.4-1.1-1.11.2-1.2
Delay discounting total patch changes 24 sec1.31.62.1-0.6-1.41.4-1.4
Delay discounting total patch changes 6 sec1.72.63.0-1.4-1.41.7-1.7
Delay discounting time to switch 0 sec3.65.57.1-2.3-1.72.6-2.7
Delay discounting water rate 0 sec6.510.412.63.02.8-3.53.5
Delay discounting water rate 12 sec11.016.420.53.04.0-4.54.5
Delay discounting water rate 18 sec3.95.17.01.42.6-2.42.4
Delay discounting water rate 24 sec6.38.610.52.52.8-3.23.2
Delay discounting water rate 6 sec5.27.69.22.22.7-3.03.0
Locomotor activity2.23.54.61.41.6-2.22.1
Locomotor testing distance2.84.66.21.42.1-2.52.4
Locomotor testing rearing1.21.92.70.11.6-1.61.5
Light reinforcement 10.20.40.50.30.6-0.70.7
Light reinforcement 21.21.61.91.41.1-1.21.3
Reaction time number correct0.20.30.60.8-0.80.00.0
Reaction time mean minus median2.93.85.6-0.9-2.42.2-2.1
Reaction time mean minus median AUC1.41.84.1-0.1-2.01.3-1.2
Reaction time num false alarms0.60.81.00.90.7-1.01.0
Reaction time num false alarms AUC0.10.10.30.6-0.1-0.30.3
Reaction time trials correct on left0.20.30.60.8-0.80.00.0
Reaction time trials on left0.30.40.80.8-0.90.1-0.0
Reaction time mean0.00.10.1-0.0-0.40.2-0.2
Reaction time mean AUC0.00.00.1-0.1-0.30.2-0.2
Median of all reaction times0.00.00.0-0.00.1-0.20.2
Reaction time omissions1.21.63.1-0.2-1.81.3-1.2
Reaction time false alarm rate0.20.30.40.40.6-0.60.5
Reaction time premature initiation rate0.91.21.7-0.4-1.31.2-1.2
Reaction time premature initiations1.41.93.90.1-2.01.4-1.3
Std. dev. reaction times0.81.01.7-0.3-1.31.1-1.1
Reaction time trials completed0.30.40.80.8-0.90.1-0.0
Reaction time trials AUC0.20.30.50.7-0.7-0.00.1
Social response proportion1.21.21.8-1.0-0.61.3-1.3
Social responses0.20.20.3-0.3-0.30.6-0.6
Social time0.10.20.3-0.2-0.40.5-0.5
Conditioned locomotion0.80.92.30.3-1.50.9-0.8
Cocaine response after cond. corrected0.80.91.30.41.1-1.11.1
Cocaine response after cond. not corrected0.50.61.10.01.0-0.90.8
Cocaine response before conditioning0.60.71.0-0.6-0.81.0-1.0
Saline control response3.14.15.3-1.5-2.02.3-2.3
Condit. Reinf. active minus inactive responses0.20.20.4-0.60.60.2-0.2
Condit. Reinf. active-inactive response ratio0.40.41.00.11.0-0.50.5
Condit. Reinf. active responses0.91.22.7-1.7-0.11.0-1.1
Condit. Reinf. inactive responses2.02.54.7-2.2-0.81.5-1.6
Condit. Reinf. lever presses2.83.85.0-1.3-1.92.2-2.2
Condit. Reinf. lever reinforcers received1.11.62.6-1.6-0.51.3-1.3
Pavlov. Cond. lever latency0.50.71.00.40.8-1.01.0
Pavlov. Cond. magazine entry latency4.75.47.0-1.7-2.22.6-2.6
Pavlov. Cond. change in total contacts2.33.24.6-1.2-1.62.2-2.1
Pavlov. Cond. index score2.63.44.9-1.1-1.72.2-2.2
Pavlov. Cond. latency score2.12.73.9-1.0-1.52.0-1.9
Pavlov. Cond. lever contacts0.30.40.60.1-0.70.8-0.7
Pavlov. Cond. magazine entry number7.28.811.42.03.0-3.43.3
Pavlov. Cond. intertrial magazine entries1.11.41.90.71.2-1.41.3
Pavlov. Cond. lever-magazine prob. diff.3.24.15.7-1.3-1.92.4-2.3
Pavlov. Cond. response bias1.82.53.3-0.9-1.61.8-1.8
Conditioned reinforcement - actives0.30.30.40.40.6-0.60.6
Conditioned reinforcement - inactives4.14.75.91.32.3-2.42.4
Conditioned locomotion8.610.412.72.23.4-3.63.5
Intermittent access intake day 1-15 change1.00.91.61.20.4-1.01.1
Intermittent access intake escalation0.50.50.70.80.4-0.80.8
Intermittent access intake escalation 20.70.71.21.10.2-0.90.9
Intermitt. access day 1 inactive lever presses1.31.41.71.01.3-1.21.2
Intermitt. access day 15 inactive lever presses1.11.32.10.81.4-1.11.1
Intermitt. access escalation Index2.32.14.4-0.22.1-1.51.3
Intermittent access day 1 total infusions1.82.04.4-1.52.1-0.90.8
Intermittent access day 15 total infusions3.23.66.10.12.5-2.12.0
Intermittent access terminal intake (last 3 days)1.71.93.4-0.31.8-1.51.4
Intermittent access total infusions1.21.42.9-1.11.7-0.80.7
Intermittent access day 1 locomotion1.31.32.6-1.61.6-0.40.2
Intermittent access day 15 total locomotion1.92.04.1-0.12.0-1.41.3
Intermittent access total locomotion2.12.46.0-1.12.4-1.11.0
Intermittent access standard deviation0.70.81.20.70.5-1.11.1
Cocaine induced anxiety0.10.10.10.4-0.3-0.10.2
Post-drug Anxiety0.80.81.90.7-1.40.7-0.6
Baseline Anxiety1.11.11.90.1-1.41.2-1.1
Lifetime Intake1.21.32.7-1.31.6-0.70.6
Incentive Sensitization - Responses0.10.10.2-0.50.3-0.10.1
Incentive Sensitization - Breakpoint0.10.10.2-0.30.5-0.30.3
Progressive ratio test 1 active lever presses1.11.11.9-0.01.4-1.11.1
Progressive ratio test 1 breakpoint1.01.01.50.11.2-1.21.1
Progressive ratio test 1 inactive lever presses0.40.40.9-0.20.9-0.60.6
Progressive ratio test 2 active lever presses1.51.62.9-0.01.7-1.41.3
Progressive ratio test 2 breakpoint2.62.94.10.52.0-1.91.9
Progressive ratio test 2 inactive lever presses3.84.47.90.22.8-2.22.1
Total sessions with >9 infusions0.50.61.3-0.81.1-0.50.4
Short access day 1 total inactive lever presses2.02.33.40.31.9-1.71.6
Short access day 10 total inactive lever presses2.22.43.21.11.5-1.81.7
Short access day 1 total infusions1.11.22.8-1.11.7-0.70.6
Short access day 10 total infusions1.81.96.5-2.60.50.6-0.8
Short access total infusions0.80.82.5-1.60.90.0-0.1
Short access day 1 locomotion0.80.91.9-1.31.4-0.20.1
Short access day 10 total locomotion0.60.71.6-1.31.1-0.0-0.1
Short access total locomotion0.60.61.7-1.30.90.0-0.1
Compulsive drug intake0.80.81.2-0.1-1.01.1-1.1
One hour access (0.3 mA shock)5.36.211.10.43.3-2.62.5
One hour access (shock baseline)4.14.76.80.52.6-2.52.4
Number of responses in last shaping day1.01.01.30.70.9-1.21.1
Context. condit. distance diff. score1.41.82.90.31.7-1.41.4
Locomotion velocity, session 10.20.20.20.50.2-0.40.5
Locomotion distance, session 11.41.83.3-1.8-0.31.4-1.4
Locomotion velocity, session 22.42.83.5-1.1-1.81.9-1.9
Locomotion distance, session 21.21.72.2-1.4-0.61.4-1.5
Locomotion velocity, session 30.20.20.5-0.70.40.2-0.2
Locomotion distance, session 30.00.00.0-0.00.2-0.10.1
Stereotopy head waving bouts, day 30.40.51.0-0.71.0-0.40.3
Stereotopy head waving duration, day 30.50.61.4-0.41.2-0.60.6
Locomotion velocity, session 70.30.30.9-1.00.30.2-0.2
Locomotion distance, session 70.10.10.4-0.7-0.10.2-0.3
Stereotopy head waving bouts, day 70.10.10.4-0.60.30.2-0.2
Stereotopy head waving duration, day 72.02.53.0-1.6-1.21.7-1.7
Locomotion velocity, session 80.30.30.5-0.1-0.50.7-0.7
Locomotion distance, session 80.20.41.1-0.41.1-0.30.2
Degree of sensitization distance0.30.30.7-0.8-0.20.4-0.5
Degree of sensitization stereotypy0.91.01.2-0.8-1.01.1-1.1
Condit. Reinf. active minus inactive responses0.40.40.6-0.7-0.50.7-0.7
Condit. Reinf. active-inactive response ratio0.10.10.1-0.3-0.10.4-0.4
Condit. Reinf. active responses0.20.20.3-0.4-0.50.6-0.5
Condit. Reinf. inactive responses0.00.00.1-0.1-0.20.1-0.1
Incentive salience index mean0.60.70.9-0.8-0.50.9-0.9
Condit. Reinf. lever presses0.20.20.4-0.0-0.40.6-0.6
Time in familiar zone, hab. session 10.20.20.5-0.50.7-0.0-0.0
Time in novel zone, hab. session 10.50.50.70.70.1-0.80.8
Total zone transitions, hab. session 10.81.11.3-0.8-1.01.1-1.1
Total locomotion distance, hab. session 10.10.20.3-0.10.5-0.50.5
Locomotion velocity, hab. session 10.00.00.1-0.20.1-0.00.0
Time in familiar zone, hab. session 20.10.10.20.4-0.0-0.40.4
Time in novel zone, hab. session 20.50.50.9-0.9-0.20.7-0.7
Total zone transitions, hab. session 24.45.79.8-3.1-1.12.4-2.5
Total locomotion distance, hab. session 20.81.13.1-1.80.20.7-0.8
Locomotion velocity, hab. session 20.60.92.6-1.60.50.5-0.6
Novel to familiar place preference ratio1.21.31.7-0.8-1.11.3-1.3
Novelty place preference0.70.71.0-0.7-0.71.0-1.0
Time in novel zone, NPP test0.60.60.8-0.7-0.60.9-0.9
Total zone transitions, NPP test2.12.93.9-1.6-1.22.0-2.0
Total locomotion distance, NPP test0.10.20.5-0.70.20.4-0.4
Locomotion velocity, NPP test0.10.20.4-0.60.20.4-0.4
Pavlov. Cond. lever latency0.20.20.30.50.4-0.50.5
Pavlov. Cond. magazine entry latency0.60.81.6-1.3-0.20.8-0.9
Pavlov. Cond. change in total contacts0.10.10.1-0.30.10.4-0.4
Pavlov. Cond. index score0.00.00.1-0.1-0.10.3-0.2
Pavlov. Cond. latency score0.00.00.1-0.3-0.00.2-0.2
Pavlov. Cond. lever contacts0.00.00.0-0.1-0.00.1-0.1
Pavlov. Cond. magazine entry number0.10.10.3-0.20.5-0.30.3
Pavlov. Cond. intertrial magazine entries0.30.40.50.70.2-0.70.7
Pavlov. Cond. lever-magazine prob. diff.0.10.20.2-0.3-0.30.5-0.5
Pavlov. Cond. response bias0.00.00.10.1-0.20.2-0.2
Bone: apparent density2.54.17.2-2.7-1.02.0-2.1
Bone surface6.010.512.7-2.8-2.93.6-3.6
Bone volume3.25.46.5-2.4-1.72.5-2.5
Bone: connectivity density4.97.79.1-3.0-2.03.0-3.0
Bone: cortical apparent density0.10.10.20.1-0.40.3-0.3
Bone: cortical area0.40.61.40.4-1.20.7-0.6
Bone: cortical porosity0.50.61.2-1.10.00.7-0.8
Bone: cortical porosity0.90.91.2-1.1-0.61.0-1.0
Bone: cortical thickness1.62.66.80.9-2.61.3-1.1
Bone: cortical thickness0.30.40.80.8-0.90.2-0.1
Bone: cortical tissue density0.10.10.30.1-0.50.3-0.3
Bone: elastic displacement2.12.42.91.71.1-1.61.7
Bone: elastic work0.20.30.60.7-0.80.2-0.2
Bone: endosteal estimation0.40.92.2-1.01.5-0.50.4
Bone: endosteal perimeter0.61.33.8-1.21.9-0.40.3
Bone: final force2.03.24.4-0.9-2.12.0-1.9
Bone: final moment1.72.83.6-0.8-1.91.9-1.8
Bone: marrow area0.41.02.4-1.01.5-0.60.5
Bone: maximum diameter0.00.10.20.4-0.20.2-0.1
Bone: maximum force3.76.48.2-2.0-2.32.9-2.8
Bone: maximum moment3.15.47.1-1.9-2.02.7-2.6
Bone: minimum diameter0.40.82.2-1.51.00.1-0.2
Bone: periosteal estimation0.00.00.0-0.10.00.1-0.1
Bone: periosteal perimeter0.20.30.5-0.7-0.10.7-0.7
Bone: post-yield work4.45.911.5-3.4-0.42.4-2.5
Bone: stiffness3.65.66.8-2.0-2.22.6-2.6
Bone: tissue strength0.10.10.2-0.4-0.10.4-0.4
Bone: trabecular number2.53.95.6-2.4-1.22.1-2.1
Bone: trabecular spacing0.70.81.00.81.0-1.01.0
Bone: trabecular thickness0.50.61.8-1.30.50.3-0.4
Bone: trabecular tissue density4.46.17.22.12.4-2.72.7
Breakpoint value in progressive ratio session2.52.83.8-0.7-1.91.9-1.8
Distance traveled before self-admin0.30.30.5-0.1-0.70.6-0.5
Distance traveled after self-admin0.10.10.30.1-0.60.4-0.3
Delta time in closed arm before/after self-admin0.30.31.0-0.2-1.00.1-0.1
Delta time in open arm before/after self-admin0.10.10.20.5-0.3-0.00.0
Diff in mean of infusions in LGA sessions0.40.41.10.3-1.10.5-0.4
Extinction: sum of active levers before priming4.14.25.9-1.5-1.72.4-2.4
Active lever presses in extinction session 61.61.64.30.7-2.10.9-0.8
Delta distance traveled before/after self-admin0.00.00.00.10.1-0.10.1
Delta ambulatory time before/after self-admin0.00.00.0-0.00.0-0.10.1
Time in closed arm before self-admin0.00.00.0-0.10.20.2-0.2
Time in closed arm after self-admin0.10.10.3-0.0-0.50.0-0.1
Time in open arm before self-admin0.30.30.4-0.30.6-0.60.6
Time in open arm after self-admin0.30.40.50.70.2-0.70.7
Sum of active levers in priming session hrs 5-60.90.92.21.5-1.10.3-0.2
Time to tail flick, vehicle, before self-admin0.90.91.0-0.9-1.01.0-1.0
Time to tail flick, vehicle, after self-admin2.22.42.5-1.5-1.61.6-1.6
Time to tail flick, test, before self-admin0.50.51.6-1.30.60.1-0.2
Time to tail flick, test, after self-admin0.00.00.00.2-0.20.0-0.0
Delta time to tail flick, vehicle, before/after SA0.90.91.0-1.0-0.71.0-1.0
Delta time to tail flick, test, before/after SA0.90.82.11.4-1.10.00.1
Ambulatory time before self-admin0.30.30.40.1-0.60.7-0.6
Ambulatory time after self-admin0.00.00.1-0.2-0.10.2-0.2
Total heroin consumption3.03.65.3-0.7-1.92.3-2.2
Area under the delay curve0.50.61.1-1.11.00.2-0.3
Delay disc. indifference point, 0s delay0.80.81.9-1.11.4-0.40.3
Delay disc. indifference point, 16s delay0.40.41.4-0.41.2-0.30.3
Delay disc. indifference point, 2s delay0.10.10.5-0.00.7-0.20.2
Delay disc. indifference point, 24s delay0.10.10.20.20.3-0.40.4
Delay disc. indifference point, 4s delay0.40.41.1-0.81.1-0.1-0.0
Delay disc. indifference point, 8s delay0.40.40.8-0.90.80.1-0.2
Delay discount exponential model param0.40.41.01.0-0.8-0.20.3
Delay discount hyperbolic model param0.40.40.80.9-0.8-0.20.3
Fecal boli incidents, locomotor time 10.10.10.30.5-0.40.1-0.1
Change in fecal boli incidents, locomotor task0.40.41.3-1.1-0.00.3-0.3
Time >=10cm from walls, locomotor time 10.70.72.4-1.60.60.2-0.2
Bouts of movement, locomotor time 10.91.01.5-0.1-1.21.2-1.1
Total resting periods, locomotor time 10.70.81.2-0.2-0.91.1-1.0
Rest time, locomotor task time 12.22.42.61.61.4-1.61.6
Distance moved, locomotor task time 11.01.12.1-1.5-0.51.0-1.0
Vertical activity count, locomotor time 10.70.71.00.11.0-1.00.9
Time >=10cm from walls, locomotor time 20.10.10.2-0.40.20.0-0.0
Bouts of movement, locomotor time 20.60.70.9-0.5-0.80.9-0.9
Total resting periods, locomotor time 20.40.50.6-0.5-0.60.8-0.8
Rest time, locomotor task time 22.02.33.11.01.8-1.61.6
Distance moved, locomotor task time 20.70.81.1-0.5-1.11.0-1.0
Vertical activity count, locomotor time 20.40.40.70.8-0.1-0.70.7
Weight adjusted by age1.92.14.0-0.5-2.01.5-1.4
Seeking ratio, delayed vs. immediate footshock0.40.41.0-1.00.30.5-0.6
Locomotion in novel chamber3.94.87.01.02.7-2.42.4
Locomotion in novel chamber post-restriction2.12.43.50.71.6-1.91.8
Progressive ratio4.45.16.0-2.4-1.62.4-2.4
Food seeking constrained by brief footshock0.10.10.3-0.2-0.50.4-0.4
Seeking ratio, punishment vs. effort3.13.84.61.91.6-2.12.1
Run reversals in cocaine runway, females1.81.83.4-1.8-0.81.2-1.3
Run reversals in cocaine runway, males1.91.93.92.0-0.2-1.31.4
Latency to leave start box in cocaine runway0.30.30.5-0.7-0.10.6-0.6
Latency to leave start box in cocaine runway, F0.20.30.6-0.8-0.00.5-0.5
Latency to leave start box in cocaine runway, M0.00.00.10.0-0.40.2-0.2
Cd content in liver1.61.82.41.30.8-1.51.5
Co content in liver2.42.93.81.51.3-1.91.9
Cu content in liver0.40.50.7-0.6-0.50.8-0.8
Fe content in liver0.00.10.10.3-0.30.1-0.1
K content in liver3.03.04.1-1.8-1.02.0-2.0
Mg content in liver2.52.65.6-2.4-0.01.5-1.6
Mn content in liver2.42.83.7-0.9-1.81.9-1.9
Na content in liver0.20.20.40.7-0.40.4-0.3
Rb content in liver0.50.61.1-1.01.0-0.50.4
Se content in liver0.40.40.7-0.8-0.20.7-0.7
Sr content in liver1.51.43.40.6-1.81.0-0.9
Zn content in liver1.11.21.7-0.6-1.11.3-1.3