U4

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000061658 0.06 0.05 5.9e-03 0.04 0.03 0.03 0.03 5.8e-03 1.3e-02 8.4e-03 6.9e-03
2 Brain gene expression ENSRNOG00000061658 0.21 0.11 2.9e-14 0.16 0.14 0.15 0.16 1.1e-14 3.1e-13 4.0e-14 3.2e-14
3 PL gene expression ENSRNOG00000061658 0.05 0.04 3.0e-03 0.04 0.03 0.03 0.03 4.6e-04 5.2e-03 2.1e-03 5.2e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.31.11.30.91.21.1
BMI without tail0.00.00.0-0.0-0.10.0
Body weight0.20.91.60.71.30.7
Epididymis fat weight4.510.411.53.13.43.2
Glucose4.77.17.22.72.62.7
Heart weight0.91.31.71.01.31.2
Left kidney weight2.16.07.1-2.7-2.3-2.4
Right kidney weight2.05.86.3-2.4-2.3-2.5
Tail length0.61.82.3-1.3-1.1-1.5
Length with tail0.10.30.6-0.50.0-0.8
Length without tail0.10.30.70.20.90.1
Liver weight, left0.50.81.2-1.1-0.5-0.9
Liver weight, right0.00.10.1-0.2-0.2-0.2
Parametrial fat weight1.73.34.12.01.51.8
Retroperitoneal fat weight2.58.38.72.92.92.8
Intraocular pressure0.20.30.50.70.60.3
Extensor digitorum longus weight5.220.721.14.54.64.6
Soleus weight0.82.42.81.61.41.7
Tibialis anterior weight9.031.131.85.65.55.6
Tibia length0.00.00.00.10.2-0.1
Number of licking bursts0.60.70.7-0.8-0.8-0.8
Food consumed during 24 hour testing period0.70.81.0-0.9-1.0-0.9
Times rat made contact with spout9.310.710.8-3.2-3.3-3.3
Mean time between licks in bursts1.72.42.5-1.6-1.4-1.6
Mean num. licks in bursts0.60.70.7-0.8-0.8-0.8
Std. dev. time between licks in bursts0.60.70.8-0.8-0.9-0.8
Water consumed over 24 hours0.60.70.7-0.8-0.8-0.8
Indifference point 0 sec1.93.13.2-1.8-1.8-1.7
Indifference point AUC1.61.92.61.31.61.2
Indifference point function ln k1.82.52.6-1.5-1.6-1.6
Indifference point function log k1.82.52.6-1.5-1.6-1.6
Delay discounting total patch changes 0 sec1.32.12.2-1.5-1.5-1.4
Delay discounting total patch changes 12 sec0.60.80.90.90.90.9
Delay discounting total patch changes 18 sec0.00.10.10.20.20.3
Delay discounting total patch changes 24 sec0.20.20.30.50.60.4
Delay discounting total patch changes 6 sec0.00.00.0-0.00.20.1
Delay discounting time to switch 0 sec0.00.00.10.2-0.10.3
Delay discounting water rate 0 sec0.61.01.21.10.81.0
Delay discounting water rate 12 sec3.14.65.4-2.1-2.3-2.0
Delay discounting water rate 18 sec0.10.20.40.60.10.3
Delay discounting water rate 24 sec0.91.21.4-1.1-1.2-1.0
Delay discounting water rate 6 sec0.30.40.9-0.3-0.9-0.4
Locomotor activity3.04.85.2-2.1-2.1-2.3
Locomotor testing distance1.32.22.6-1.5-1.3-1.6
Locomotor testing rearing0.81.21.4-1.0-1.2-1.1
Light reinforcement 10.00.00.10.30.10.2
Light reinforcement 25.16.87.42.62.72.5
Reaction time number correct0.00.00.1-0.10.3-0.2
Reaction time mean minus median0.30.40.7-0.3-0.8-0.5
Reaction time mean minus median AUC0.00.10.10.2-0.4-0.0
Reaction time num false alarms2.63.64.5-1.8-1.8-2.1
Reaction time num false alarms AUC2.84.05.0-1.8-1.9-2.2
Reaction time trials correct on left0.00.00.1-0.10.3-0.2
Reaction time trials on left0.00.00.1-0.10.3-0.1
Reaction time mean0.20.30.60.80.30.6
Reaction time mean AUC0.10.20.40.60.20.4
Median of all reaction times0.60.81.01.00.70.9
Reaction time omissions0.30.30.60.80.40.5
Reaction time false alarm rate2.43.44.0-1.6-1.9-2.0
Reaction time premature initiation rate0.91.21.40.91.21.1
Reaction time premature initiations0.71.01.40.81.20.9
Std. dev. reaction times0.20.30.5-0.2-0.7-0.5
Reaction time trials completed0.00.00.1-0.10.3-0.1
Reaction time trials AUC0.10.10.30.20.50.1
Social response proportion1.41.62.1-0.9-1.5-1.3
Social responses1.01.31.8-0.9-1.4-1.1
Social time0.00.10.10.2-0.40.1
Conditioned locomotion0.91.11.1-1.0-1.0-1.0
Cocaine response after cond. corrected0.10.10.2-0.4-0.1-0.4
Cocaine response after cond. not corrected0.30.30.5-0.7-0.2-0.7
Cocaine response before conditioning0.00.00.1-0.20.1-0.2
Saline control response0.50.60.70.80.70.9
Condit. Reinf. active minus inactive responses0.20.20.20.50.30.4
Condit. Reinf. active-inactive response ratio0.00.00.00.1-0.00.0
Condit. Reinf. active responses0.71.01.11.00.91.0
Condit. Reinf. inactive responses0.81.01.11.01.01.0
Condit. Reinf. lever presses0.30.40.40.60.60.6
Condit. Reinf. lever reinforcers received0.81.21.31.11.01.1
Pavlov. Cond. lever latency1.11.51.6-1.2-1.3-1.2
Pavlov. Cond. magazine entry latency0.10.10.2-0.3-0.4-0.3
Pavlov. Cond. change in total contacts0.40.60.70.80.70.8
Pavlov. Cond. index score0.00.00.10.20.20.2
Pavlov. Cond. latency score0.00.00.0-0.1-0.2-0.2
Pavlov. Cond. lever contacts0.50.60.70.80.80.7
Pavlov. Cond. magazine entry number0.00.00.1-0.2-0.1-0.2
Pavlov. Cond. intertrial magazine entries0.30.40.60.60.80.6
Pavlov. Cond. lever-magazine prob. diff.0.00.00.00.10.10.1
Pavlov. Cond. response bias0.30.40.50.70.70.6
Conditioned reinforcement - actives1.51.41.9-1.4-1.1-1.1
Conditioned reinforcement - inactives3.43.84.5-1.9-2.1-1.8
Conditioned locomotion0.50.60.9-0.4-1.0-0.7
Intermittent access intake day 1-15 change0.90.91.2-0.7-1.0-1.1
Intermittent access intake escalation0.90.91.1-0.7-1.0-1.0
Intermittent access intake escalation 20.40.40.5-0.6-0.6-0.7
Intermitt. access day 1 inactive lever presses2.42.63.0-1.4-1.7-1.6
Intermitt. access day 15 inactive lever presses1.51.61.9-1.4-1.2-1.2
Intermitt. access escalation Index0.20.20.2-0.4-0.3-0.5
Intermittent access day 1 total infusions2.02.22.9-1.7-1.4-1.4
Intermittent access day 15 total infusions3.84.24.4-2.0-2.1-2.0
Intermittent access terminal intake (last 3 days)3.84.14.2-2.0-2.1-2.0
Intermittent access total infusions3.23.54.1-2.0-1.8-1.8
Intermittent access day 1 locomotion3.53.64.0-1.7-2.0-1.9
Intermittent access day 15 total locomotion1.21.31.5-1.0-1.2-1.2
Intermittent access total locomotion3.33.84.3-1.7-2.0-2.1
Intermittent access standard deviation0.30.30.4-0.3-0.6-0.6
Cocaine induced anxiety0.00.00.0-0.20.0-0.2
Post-drug Anxiety0.50.60.70.80.80.7
Baseline Anxiety0.10.10.10.40.20.3
Lifetime Intake1.82.02.6-1.6-1.2-1.3
Incentive Sensitization - Responses0.30.30.6-0.8-0.4-0.6
Incentive Sensitization - Breakpoint0.40.40.6-0.8-0.4-0.6
Progressive ratio test 1 active lever presses1.51.51.9-1.4-1.2-1.1
Progressive ratio test 1 breakpoint1.71.71.9-1.4-1.3-1.2
Progressive ratio test 1 inactive lever presses1.01.11.3-1.1-0.9-1.1
Progressive ratio test 2 active lever presses2.42.62.9-1.7-1.5-1.6
Progressive ratio test 2 breakpoint1.92.12.5-1.6-1.3-1.5
Progressive ratio test 2 inactive lever presses3.33.84.4-2.1-1.7-2.0
Total sessions with >9 infusions0.91.01.1-0.9-1.1-1.0
Short access day 1 total inactive lever presses1.82.02.6-1.3-1.6-1.3
Short access day 10 total inactive lever presses0.70.81.41.20.60.8
Short access day 1 total infusions0.20.20.3-0.5-0.3-0.4
Short access day 10 total infusions0.20.20.2-0.5-0.4-0.3
Short access total infusions0.20.30.5-0.7-0.3-0.4
Short access day 1 locomotion0.80.81.7-0.5-1.3-0.8
Short access day 10 total locomotion0.30.30.6-0.2-0.8-0.5
Short access total locomotion0.20.20.50.0-0.7-0.2
Compulsive drug intake0.90.91.00.90.91.0
One hour access (0.3 mA shock)1.61.92.4-1.5-1.3-1.3
One hour access (shock baseline)2.12.42.8-1.7-1.4-1.6
Number of responses in last shaping day0.50.50.9-0.4-0.9-0.8
Context. condit. distance diff. score0.10.10.2-0.3-0.5-0.3
Locomotion velocity, session 10.00.00.10.20.00.2
Locomotion distance, session 10.40.50.70.80.40.8
Locomotion velocity, session 20.10.10.10.30.30.3
Locomotion distance, session 20.00.00.0-0.1-0.1-0.1
Locomotion velocity, session 34.65.45.72.42.22.4
Locomotion distance, session 31.31.41.51.21.11.2
Stereotopy head waving bouts, day 31.21.52.21.11.51.0
Stereotopy head waving duration, day 30.81.01.21.01.10.9
Locomotion velocity, session 71.61.82.2-1.3-1.5-1.3
Locomotion distance, session 71.72.22.6-1.4-1.6-1.4
Stereotopy head waving bouts, day 71.51.71.81.31.41.3
Stereotopy head waving duration, day 71.61.92.11.41.41.3
Locomotion velocity, session 83.33.94.61.92.11.9
Locomotion distance, session 80.10.10.2-0.2-0.5-0.2
Degree of sensitization distance2.82.82.9-1.7-1.7-1.7
Degree of sensitization stereotypy2.12.22.31.51.51.5
Condit. Reinf. active minus inactive responses0.00.00.0-0.1-0.1-0.1
Condit. Reinf. active-inactive response ratio0.40.40.6-0.6-0.8-0.6
Condit. Reinf. active responses0.00.00.00.10.20.1
Condit. Reinf. inactive responses0.30.30.60.40.80.4
Incentive salience index mean0.10.10.1-0.4-0.4-0.4
Condit. Reinf. lever presses0.40.60.6-0.8-0.7-0.8
Time in familiar zone, hab. session 10.00.00.0-0.1-0.2-0.0
Time in novel zone, hab. session 10.90.80.90.91.00.9
Total zone transitions, hab. session 11.42.02.2-1.4-1.3-1.5
Total locomotion distance, hab. session 11.62.32.6-1.6-1.4-1.6
Locomotion velocity, hab. session 11.72.52.7-1.7-1.5-1.6
Time in familiar zone, hab. session 20.40.40.40.70.70.7
Time in novel zone, hab. session 20.20.20.3-0.5-0.5-0.5
Total zone transitions, hab. session 20.60.70.8-0.8-0.9-0.9
Total locomotion distance, hab. session 22.12.83.0-1.7-1.6-1.7
Locomotion velocity, hab. session 22.02.72.8-1.7-1.6-1.7
Novel to familiar place preference ratio0.00.10.10.10.40.1
Novelty place preference0.20.20.40.40.60.4
Time in novel zone, NPP test0.40.40.70.60.80.6
Total zone transitions, NPP test0.10.20.4-0.2-0.6-0.3
Total locomotion distance, NPP test0.30.40.6-0.6-0.8-0.5
Locomotion velocity, NPP test0.50.81.1-0.8-1.1-0.8
Pavlov. Cond. lever latency0.00.00.0-0.1-0.0-0.1
Pavlov. Cond. magazine entry latency0.60.80.9-0.8-1.0-0.9
Pavlov. Cond. change in total contacts0.20.20.2-0.4-0.4-0.4
Pavlov. Cond. index score0.10.20.2-0.4-0.5-0.4
Pavlov. Cond. latency score0.20.30.3-0.5-0.5-0.5
Pavlov. Cond. lever contacts0.10.10.2-0.4-0.4-0.3
Pavlov. Cond. magazine entry number0.20.20.40.30.60.3
Pavlov. Cond. intertrial magazine entries4.45.35.42.32.32.3
Pavlov. Cond. lever-magazine prob. diff.0.10.10.2-0.3-0.4-0.3
Pavlov. Cond. response bias0.40.50.6-0.6-0.8-0.6
Bone: apparent density0.00.00.1-0.00.3-0.0
Bone surface3.86.77.42.52.72.5
Bone volume1.93.23.51.81.91.7
Bone: connectivity density0.81.31.71.01.31.0
Bone: cortical apparent density0.00.00.1-0.1-0.3-0.0
Bone: cortical area0.00.10.1-0.20.3-0.1
Bone: cortical porosity0.40.50.6-0.8-0.4-0.8
Bone: cortical porosity0.40.50.7-0.8-0.3-0.8
Bone: cortical thickness2.74.45.8-2.4-1.5-2.3
Bone: cortical thickness0.91.11.3-1.2-0.8-1.1
Bone: cortical tissue density0.00.00.0-0.0-0.20.1
Bone: elastic displacement0.30.30.5-0.7-0.3-0.7
Bone: elastic work0.10.10.2-0.20.5-0.1
Bone: endosteal estimation4.39.410.73.32.83.1
Bone: endosteal perimeter2.14.34.42.12.12.0
Bone: final force0.40.70.90.80.90.7
Bone: final moment0.40.60.90.70.90.7
Bone: marrow area4.49.510.83.32.83.1
Bone: maximum diameter0.71.31.51.11.21.1
Bone: maximum force0.50.91.30.91.10.8
Bone: maximum moment0.40.81.10.81.10.7
Bone: minimum diameter5.09.210.32.93.23.0
Bone: periosteal estimation1.73.43.71.81.91.8
Bone: periosteal perimeter0.61.01.40.81.20.9
Bone: post-yield work0.91.21.31.11.11.1
Bone: stiffness0.00.00.0-0.1-0.1-0.1
Bone: tissue strength0.40.40.4-0.6-0.6-0.7
Bone: trabecular number0.00.10.2-0.00.5-0.0
Bone: trabecular spacing3.24.15.0-1.9-2.2-1.9
Bone: trabecular thickness0.81.01.21.01.11.0
Bone: trabecular tissue density1.52.12.2-1.4-1.5-1.5
Breakpoint value in progressive ratio session0.10.10.1-0.3-0.3-0.1
Distance traveled before self-admin0.00.00.10.2-0.00.4
Distance traveled after self-admin0.20.30.40.70.30.5
Delta time in closed arm before/after self-admin0.10.10.20.4-0.10.2
Delta time in open arm before/after self-admin0.40.40.60.50.50.8
Diff in mean of infusions in LGA sessions0.30.30.50.70.40.5
Extinction: sum of active levers before priming0.00.00.00.1-0.10.2
Active lever presses in extinction session 60.20.10.2-0.4-0.4-0.4
Delta distance traveled before/after self-admin0.00.00.00.0-0.1-0.1
Delta ambulatory time before/after self-admin0.00.00.1-0.10.0-0.2
Time in closed arm before self-admin0.50.50.80.50.90.7
Time in closed arm after self-admin0.50.50.60.70.70.8
Time in open arm before self-admin0.20.20.4-0.3-0.7-0.4
Time in open arm after self-admin0.10.10.10.20.00.4
Sum of active levers in priming session hrs 5-60.00.00.10.3-0.20.1
Time to tail flick, vehicle, before self-admin4.14.14.5-1.9-2.1-2.1
Time to tail flick, vehicle, after self-admin2.22.33.01.71.41.4
Time to tail flick, test, before self-admin0.40.40.6-0.5-0.6-0.8
Time to tail flick, test, after self-admin0.50.50.8-0.5-0.9-0.7
Delta time to tail flick, vehicle, before/after SA4.74.64.72.22.12.1
Delta time to tail flick, test, before/after SA0.00.00.1-0.0-0.20.0
Ambulatory time before self-admin0.60.61.00.70.61.0
Ambulatory time after self-admin0.70.70.90.90.70.9
Total heroin consumption3.03.64.4-1.6-2.1-1.9
Area under the delay curve0.10.10.1-0.0-0.3-0.4
Delay disc. indifference point, 0s delay0.00.00.10.30.10.1
Delay disc. indifference point, 16s delay0.00.00.10.20.0-0.1
Delay disc. indifference point, 2s delay0.00.00.1-0.10.20.3
Delay disc. indifference point, 24s delay0.70.71.0-0.7-0.8-1.0
Delay disc. indifference point, 4s delay0.10.10.20.40.30.3
Delay disc. indifference point, 8s delay0.50.50.7-0.2-0.8-0.9
Delay discount exponential model param0.10.10.20.10.30.4
Delay discount hyperbolic model param0.00.00.00.00.10.2
Fecal boli incidents, locomotor time 10.60.60.9-0.9-0.8-0.6
Change in fecal boli incidents, locomotor task1.61.62.0-0.9-1.4-1.3
Time >=10cm from walls, locomotor time 10.40.40.6-0.4-0.7-0.7
Bouts of movement, locomotor time 10.10.20.30.50.30.4
Total resting periods, locomotor time 10.10.20.30.60.20.3
Rest time, locomotor task time 11.01.12.01.40.80.8
Distance moved, locomotor task time 10.40.40.7-0.8-0.6-0.5
Vertical activity count, locomotor time 10.20.20.7-0.8-0.1-0.0
Time >=10cm from walls, locomotor time 21.11.11.71.30.91.0
Bouts of movement, locomotor time 21.21.31.61.21.31.0
Total resting periods, locomotor time 20.30.40.50.70.70.4
Rest time, locomotor task time 20.10.20.4-0.1-0.3-0.6
Distance moved, locomotor task time 20.40.40.60.70.50.8
Vertical activity count, locomotor time 20.60.71.10.60.81.0
Weight adjusted by age1.21.41.5-1.2-1.2-1.1
Seeking ratio, delayed vs. immediate footshock0.10.10.2-0.3-0.2-0.5
Locomotion in novel chamber0.50.61.0-0.6-1.0-0.6
Locomotion in novel chamber post-restriction1.41.72.21.21.31.5
Progressive ratio0.20.20.20.40.50.4
Food seeking constrained by brief footshock1.62.02.6-1.5-1.0-1.6
Seeking ratio, punishment vs. effort1.31.51.7-1.3-1.1-1.3
Run reversals in cocaine runway, females0.80.81.1-1.1-0.9-0.8
Run reversals in cocaine runway, males0.00.00.1-0.30.0-0.0
Latency to leave start box in cocaine runway0.10.10.10.30.20.3
Latency to leave start box in cocaine runway, F0.00.00.10.10.20.1
Latency to leave start box in cocaine runway, M0.50.50.70.80.50.7
Cd content in liver1.11.31.4-1.2-1.0-1.2
Co content in liver0.00.00.00.1-0.10.0
Cu content in liver0.00.00.00.10.00.1
Fe content in liver0.10.10.20.40.20.4
K content in liver0.60.60.80.90.60.9
Mg content in liver0.60.70.80.90.60.9
Mn content in liver1.11.31.41.21.11.1
Na content in liver3.74.04.32.01.82.1
Rb content in liver1.01.21.5-1.1-1.2-1.0
Se content in liver0.20.20.3-0.3-0.6-0.5
Sr content in liver2.52.32.5-1.5-1.5-1.6
Zn content in liver0.40.50.8-0.5-0.9-0.6