Itga2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability ENSRNOG00000058111 0.03 0.02 1.4e-03 0.01 0.01 0.01 0 3.5e-02 2.0e-02 3.1e-02 7.6e-02
2 Eye gene expression ENSRNOG00000058111 0.62 0.15 9.4e-05 0.16 0.14 0.11 0.14 2.0e-03 3.5e-03 9.6e-03 3.8e-03
3 NAcc gene expression ENSRNOG00000058111 0.38 0.11 0.0e+00 0.37 0.34 0.36 0.36 4.9e-29 4.1e-26 1.2e-27 2.8e-28

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.10.30.70.40.0-0.9
BMI without tail1.73.65.12.1-1.1-2.3
Body weight1.45.77.62.4-1.9-2.8
Epididymis fat weight0.40.91.61.30.5-1.0
Glucose0.00.00.10.00.30.1
Heart weight0.40.50.90.8-0.1-0.9
Left kidney weight0.51.32.01.4-0.7-1.2
Right kidney weight0.30.81.51.2-0.1-1.0
Tail length2.36.99.53.1-1.7-2.9
Length with tail1.76.18.42.9-1.8-2.5
Length without tail0.00.00.00.1-0.0-0.0
Liver weight, left0.40.71.7-0.01.30.5
Liver weight, right1.72.84.4-2.10.71.9
Parametrial fat weight0.00.00.00.00.1-0.1
Retroperitoneal fat weight0.31.21.91.1-0.5-1.4
Intraocular pressure1.52.25.40.02.31.0
Extensor digitorum longus weight2.49.612.42.6-3.5-3.1
Soleus weight7.020.433.85.8-1.6-5.0
Tibialis anterior weight3.311.513.63.5-2.9-3.7
Tibia length0.00.10.20.50.2-0.1
Number of licking bursts0.10.20.30.50.4-0.2
Food consumed during 24 hour testing period0.80.91.8-1.30.10.9
Times rat made contact with spout2.12.43.31.2-1.5-1.8
Mean time between licks in bursts0.60.81.70.81.3-0.3
Mean num. licks in bursts0.60.71.7-0.1-1.3-0.6
Std. dev. time between licks in bursts1.11.32.4-0.51.51.2
Water consumed over 24 hours0.60.71.4-0.61.20.5
Indifference point 0 sec1.21.93.2-1.8-0.21.6
Indifference point AUC0.70.91.11.0-0.7-1.0
Indifference point function ln k1.01.41.8-1.20.91.3
Indifference point function log k1.01.41.8-1.20.91.3
Delay discounting total patch changes 0 sec0.91.42.3-1.5-0.11.4
Delay discounting total patch changes 12 sec0.10.20.60.2-0.7-0.1
Delay discounting total patch changes 18 sec0.60.81.0-1.00.61.0
Delay discounting total patch changes 24 sec0.20.30.70.1-0.9-0.2
Delay discounting total patch changes 6 sec0.10.20.4-0.4-0.70.1
Delay discounting time to switch 0 sec0.10.10.3-0.5-0.10.2
Delay discounting water rate 0 sec0.30.51.00.71.00.2
Delay discounting water rate 12 sec1.11.72.71.7-0.2-1.5
Delay discounting water rate 18 sec0.20.20.30.50.5-0.5
Delay discounting water rate 24 sec0.10.10.2-0.20.4-0.2
Delay discounting water rate 6 sec0.50.82.0-0.21.40.5
Locomotor activity2.03.24.52.1-0.8-2.1
Locomotor testing distance1.01.62.01.4-1.0-1.4
Locomotor testing rearing0.10.20.40.30.7-0.2
Light reinforcement 10.20.51.20.41.10.0
Light reinforcement 21.21.63.3-0.41.81.1
Reaction time number correct0.40.61.0-1.00.40.9
Reaction time mean minus median0.60.81.4-0.51.20.9
Reaction time mean minus median AUC1.41.82.6-1.11.21.6
Reaction time num false alarms0.91.32.1-1.4-0.01.3
Reaction time num false alarms AUC0.81.11.9-1.4-0.11.2
Reaction time trials correct on left0.40.61.0-1.00.40.9
Reaction time trials on left0.50.60.9-1.00.50.9
Reaction time mean1.31.82.5-0.81.61.5
Reaction time mean AUC1.31.72.6-0.91.41.6
Median of all reaction times1.31.82.5-0.81.61.5
Reaction time omissions0.70.91.5-0.31.11.2
Reaction time false alarm rate0.10.10.2-0.4-0.10.5
Reaction time premature initiation rate1.01.31.71.1-1.3-1.0
Reaction time premature initiations0.60.81.70.6-1.3-0.6
Std. dev. reaction times1.01.42.2-0.61.51.3
Reaction time trials completed0.50.60.9-1.00.50.9
Reaction time trials AUC0.40.61.0-1.00.40.8
Social response proportion0.40.40.70.70.8-0.2
Social responses0.20.30.3-0.60.60.3
Social time0.00.00.10.0-0.20.1
Conditioned locomotion0.50.60.90.9-0.3-1.0
Cocaine response after cond. corrected0.30.30.50.60.3-0.7
Cocaine response after cond. not corrected0.70.81.9-0.41.40.5
Cocaine response before conditioning4.25.17.0-2.31.72.7
Saline control response0.10.10.2-0.20.40.1
Condit. Reinf. active minus inactive responses1.92.34.4-2.10.31.6
Condit. Reinf. active-inactive response ratio1.51.63.6-1.9-0.21.0
Condit. Reinf. active responses0.50.60.9-1.0-0.30.9
Condit. Reinf. inactive responses0.10.10.30.20.30.5
Condit. Reinf. lever presses3.64.98.3-2.90.12.6
Condit. Reinf. lever reinforcers received1.01.42.2-1.50.01.4
Pavlov. Cond. lever latency4.76.510.43.2-0.5-3.0
Pavlov. Cond. magazine entry latency2.63.05.3-2.30.61.8
Pavlov. Cond. change in total contacts6.08.313.8-3.70.83.3
Pavlov. Cond. index score4.15.48.7-3.00.72.6
Pavlov. Cond. latency score3.74.77.9-2.80.52.4
Pavlov. Cond. lever contacts3.64.97.8-2.80.42.6
Pavlov. Cond. magazine entry number5.36.510.33.2-1.2-2.8
Pavlov. Cond. intertrial magazine entries0.40.61.31.10.1-0.7
Pavlov. Cond. lever-magazine prob. diff.4.65.99.5-3.11.02.7
Pavlov. Cond. response bias5.67.812.2-3.50.93.2
Conditioned reinforcement - actives0.00.00.10.10.2-0.3
Conditioned reinforcement - inactives0.30.30.4-0.60.40.6
Conditioned locomotion0.10.10.10.10.40.3
Intermittent access intake day 1-15 change0.20.20.4-0.10.40.6
Intermittent access intake escalation0.30.30.6-0.20.40.8
Intermittent access intake escalation 20.40.40.8-0.50.30.9
Intermitt. access day 1 inactive lever presses0.70.71.9-0.5-1.4-0.1
Intermitt. access day 15 inactive lever presses0.70.71.21.00.0-1.1
Intermitt. access escalation Index4.33.95.01.6-2.2-2.0
Intermittent access day 1 total infusions0.30.30.50.70.4-0.5
Intermittent access day 15 total infusions0.30.30.50.60.70.3
Intermittent access terminal intake (last 3 days)0.30.30.80.90.3-0.1
Intermittent access total infusions0.40.51.11.10.1-0.6
Intermittent access day 1 locomotion0.00.00.10.20.20.0
Intermittent access day 15 total locomotion0.70.71.6-0.11.30.7
Intermittent access total locomotion0.20.20.3-0.10.60.5
Intermittent access standard deviation1.61.73.1-0.41.71.4
Cocaine induced anxiety0.00.00.0-0.2-0.0-0.1
Post-drug Anxiety0.00.00.0-0.2-0.2-0.2
Baseline Anxiety0.00.00.10.10.30.1
Lifetime Intake0.20.20.30.60.5-0.2
Incentive Sensitization - Responses1.01.01.51.21.1-0.6
Incentive Sensitization - Breakpoint0.90.91.31.11.2-0.4
Progressive ratio test 1 active lever presses0.30.30.8-0.9-0.5-0.1
Progressive ratio test 1 breakpoint0.30.30.6-0.8-0.6-0.2
Progressive ratio test 1 inactive lever presses0.70.71.50.7-0.5-1.2
Progressive ratio test 2 active lever presses0.20.20.60.30.8-0.1
Progressive ratio test 2 breakpoint0.40.41.20.11.10.1
Progressive ratio test 2 inactive lever presses1.92.23.31.80.0-1.8
Total sessions with >9 infusions0.00.00.10.30.0-0.1
Short access day 1 total inactive lever presses3.84.24.52.0-2.1-2.1
Short access day 10 total inactive lever presses0.20.30.6-0.4-0.80.0
Short access day 1 total infusions0.20.20.30.60.3-0.4
Short access day 10 total infusions0.20.20.3-0.30.60.5
Short access total infusions0.10.10.3-0.00.60.1
Short access day 1 locomotion0.30.30.80.20.90.3
Short access day 10 total locomotion2.32.54.3-1.41.12.1
Short access total locomotion0.30.30.7-0.50.30.8
Compulsive drug intake0.60.61.0-0.21.00.9
One hour access (0.3 mA shock)0.30.40.90.30.90.4
One hour access (shock baseline)0.10.10.10.40.0-0.2
Number of responses in last shaping day1.11.12.1-1.4-0.21.1
Context. condit. distance diff. score0.50.61.3-0.6-1.10.2
Locomotion velocity, session 10.20.20.4-0.7-0.20.2
Locomotion distance, session 11.11.43.00.0-1.7-1.1
Locomotion velocity, session 21.11.31.81.3-0.6-1.3
Locomotion distance, session 20.60.81.40.3-1.2-1.0
Locomotion velocity, session 30.60.61.31.1-0.4-0.7
Locomotion distance, session 30.10.10.20.0-0.4-0.0
Stereotopy head waving bouts, day 33.84.57.62.8-0.3-2.4
Stereotopy head waving duration, day 32.02.44.72.20.0-1.6
Locomotion velocity, session 70.20.20.2-0.40.50.4
Locomotion distance, session 70.71.01.2-0.81.01.1
Stereotopy head waving bouts, day 70.80.91.31.1-0.2-1.2
Stereotopy head waving duration, day 71.31.62.11.4-0.8-1.4
Locomotion velocity, session 80.50.61.2-1.10.10.7
Locomotion distance, session 80.60.91.8-1.0-1.3-0.1
Degree of sensitization distance0.30.30.4-0.40.60.5
Degree of sensitization stereotypy0.20.20.30.5-0.2-0.5
Condit. Reinf. active minus inactive responses1.41.52.3-1.50.81.3
Condit. Reinf. active-inactive response ratio1.31.41.5-1.11.21.2
Condit. Reinf. active responses1.62.02.9-1.71.11.4
Condit. Reinf. inactive responses0.91.11.9-1.40.70.9
Incentive salience index mean0.40.51.0-1.00.10.6
Condit. Reinf. lever presses0.10.20.5-0.3-0.7-0.2
Time in familiar zone, hab. session 10.00.00.10.0-0.0-0.2
Time in novel zone, hab. session 10.90.92.11.50.3-0.6
Total zone transitions, hab. session 11.01.42.6-1.60.90.9
Total locomotion distance, hab. session 10.10.10.2-0.3-0.2-0.4
Locomotion velocity, hab. session 10.10.10.3-0.60.0-0.2
Time in familiar zone, hab. session 20.60.60.90.7-1.0-0.7
Time in novel zone, hab. session 21.01.01.2-0.91.10.9
Total zone transitions, hab. session 20.60.81.30.0-1.1-1.0
Total locomotion distance, hab. session 21.92.54.01.1-1.5-2.0
Locomotion velocity, hab. session 21.92.64.21.2-1.5-2.0
Novel to familiar place preference ratio0.80.92.0-0.01.40.8
Novelty place preference0.80.82.20.21.50.6
Time in novel zone, NPP test0.91.02.50.31.60.5
Total zone transitions, NPP test0.30.40.9-0.3-1.0-0.4
Total locomotion distance, NPP test0.30.51.2-0.1-1.1-0.4
Locomotion velocity, NPP test0.30.41.0-0.2-1.0-0.3
Pavlov. Cond. lever latency0.50.71.70.11.30.5
Pavlov. Cond. magazine entry latency0.50.71.5-0.51.20.5
Pavlov. Cond. change in total contacts0.10.20.50.00.7-0.1
Pavlov. Cond. index score0.00.00.0-0.1-0.1-0.2
Pavlov. Cond. latency score0.10.10.3-0.3-0.5-0.2
Pavlov. Cond. lever contacts0.30.30.7-0.5-0.9-0.1
Pavlov. Cond. magazine entry number0.10.10.2-0.3-0.40.5
Pavlov. Cond. intertrial magazine entries0.10.10.1-0.3-0.30.1
Pavlov. Cond. lever-magazine prob. diff.0.00.00.1-0.00.2-0.0
Pavlov. Cond. response bias0.00.00.1-0.30.2-0.1
Bone: apparent density2.64.45.71.8-2.0-2.4
Bone surface1.22.23.10.7-1.8-1.7
Bone volume0.81.31.90.5-1.3-1.4
Bone: connectivity density3.14.95.71.9-2.3-2.4
Bone: cortical apparent density5.67.29.5-2.62.43.1
Bone: cortical area0.00.00.0-0.2-0.10.0
Bone: cortical porosity1.21.31.81.2-1.0-1.3
Bone: cortical porosity0.60.61.10.9-0.3-1.0
Bone: cortical thickness0.61.01.7-1.10.41.3
Bone: cortical thickness2.12.53.3-1.41.51.8
Bone: cortical tissue density5.47.08.9-2.52.43.0
Bone: elastic displacement0.20.20.30.5-0.5-0.4
Bone: elastic work0.10.10.3-0.10.60.1
Bone: endosteal estimation0.30.81.50.80.0-1.2
Bone: endosteal perimeter1.22.54.71.5-0.6-2.2
Bone: final force0.71.22.9-1.7-0.20.8
Bone: final moment0.60.92.3-1.5-0.20.6
Bone: marrow area0.40.91.70.90.1-1.3
Bone: maximum diameter1.93.54.81.8-1.5-2.2
Bone: maximum force0.40.81.8-1.3-0.10.7
Bone: maximum moment0.30.51.2-1.1-0.10.4
Bone: minimum diameter0.30.61.7-0.21.30.3
Bone: periosteal estimation0.10.20.40.30.0-0.7
Bone: periosteal perimeter0.71.22.01.1-0.6-1.4
Bone: post-yield work0.20.30.6-0.80.40.5
Bone: stiffness0.20.30.8-0.90.00.5
Bone: tissue strength0.80.81.8-0.6-1.3-0.4
Bone: trabecular number1.82.84.31.2-2.1-1.7
Bone: trabecular spacing1.11.42.0-0.81.41.2
Bone: trabecular thickness0.20.20.5-0.3-0.7-0.1
Bone: trabecular tissue density0.91.32.0-1.40.51.3
Breakpoint value in progressive ratio session0.10.10.20.50.2-0.2
Distance traveled before self-admin1.21.33.0-0.0-1.7-0.9
Distance traveled after self-admin0.50.50.8-0.9-0.80.4
Delta time in closed arm before/after self-admin0.50.51.40.21.20.1
Delta time in open arm before/after self-admin1.21.22.1-1.4-0.80.9
Diff in mean of infusions in LGA sessions0.70.81.2-0.71.10.9
Extinction: sum of active levers before priming0.50.50.90.9-0.0-0.7
Active lever presses in extinction session 60.30.20.30.60.6-0.3
Delta distance traveled before/after self-admin0.60.71.1-0.80.41.1
Delta ambulatory time before/after self-admin0.40.50.9-0.70.11.0
Time in closed arm before self-admin0.40.51.30.31.10.1
Time in closed arm after self-admin1.11.21.61.31.3-0.6
Time in open arm before self-admin0.30.30.50.7-0.6-0.4
Time in open arm after self-admin0.50.61.0-0.7-1.00.5
Sum of active levers in priming session hrs 5-65.95.88.93.0-1.7-2.4
Time to tail flick, vehicle, before self-admin0.80.81.4-0.9-1.2-0.3
Time to tail flick, vehicle, after self-admin0.60.60.90.8-0.5-1.0
Time to tail flick, test, before self-admin1.21.21.51.2-0.9-1.2
Time to tail flick, test, after self-admin0.20.20.60.30.8-0.2
Delta time to tail flick, vehicle, before/after SA1.31.22.81.70.2-0.9
Delta time to tail flick, test, before/after SA0.10.10.20.20.5-0.2
Ambulatory time before self-admin1.11.22.30.3-1.5-1.1
Ambulatory time after self-admin0.30.30.4-0.7-0.40.5
Total heroin consumption0.20.20.50.40.70.2
Area under the delay curve1.11.12.0-0.51.41.1
Delay disc. indifference point, 0s delay0.30.30.6-0.10.70.6
Delay disc. indifference point, 16s delay0.40.40.6-0.80.30.8
Delay disc. indifference point, 2s delay0.20.20.40.70.5-0.1
Delay disc. indifference point, 24s delay0.00.00.00.0-0.20.1
Delay disc. indifference point, 4s delay2.42.55.0-0.42.21.5
Delay disc. indifference point, 8s delay0.40.51.10.21.00.6
Delay discount exponential model param1.21.32.40.4-1.6-1.1
Delay discount hyperbolic model param1.01.02.30.2-1.5-0.9
Fecal boli incidents, locomotor time 11.11.22.20.6-1.0-1.5
Change in fecal boli incidents, locomotor task0.00.00.0-0.0-0.10.1
Time >=10cm from walls, locomotor time 10.70.81.50.8-0.4-1.2
Bouts of movement, locomotor time 10.30.30.60.8-0.3-0.6
Total resting periods, locomotor time 10.20.30.40.7-0.2-0.6
Rest time, locomotor task time 10.10.20.2-0.30.50.4
Distance moved, locomotor task time 10.30.30.60.0-0.8-0.5
Vertical activity count, locomotor time 10.50.51.10.3-1.0-0.5
Time >=10cm from walls, locomotor time 22.42.63.61.9-1.0-1.7
Bouts of movement, locomotor time 20.50.51.00.41.00.6
Total resting periods, locomotor time 20.80.81.70.21.30.8
Rest time, locomotor task time 22.32.72.8-1.61.61.7
Distance moved, locomotor task time 20.81.01.41.2-0.6-1.1
Vertical activity count, locomotor time 21.21.31.71.0-1.3-1.1
Weight adjusted by age0.30.30.50.4-0.7-0.5
Seeking ratio, delayed vs. immediate footshock0.60.71.51.20.3-0.7
Locomotion in novel chamber0.00.10.20.00.40.1
Locomotion in novel chamber post-restriction0.30.30.5-0.70.20.7
Progressive ratio1.51.72.41.6-0.7-1.5
Food seeking constrained by brief footshock0.91.11.51.2-0.5-1.2
Seeking ratio, punishment vs. effort0.60.71.0-0.90.61.0
Run reversals in cocaine runway, females1.61.62.4-1.60.71.4
Run reversals in cocaine runway, males0.40.40.70.60.80.2
Latency to leave start box in cocaine runway0.30.30.8-0.10.90.1
Latency to leave start box in cocaine runway, F0.50.50.7-0.70.80.5
Latency to leave start box in cocaine runway, M0.60.61.21.10.3-0.7
Cd content in liver5.25.78.0-2.61.52.8
Co content in liver0.30.40.6-0.8-0.20.6
Cu content in liver1.41.74.1-0.52.00.9
Fe content in liver0.20.20.40.60.3-0.4
K content in liver0.90.92.0-0.7-1.40.4
Mg content in liver1.41.52.3-1.5-0.31.4
Mn content in liver1.41.62.71.6-1.2-0.9
Na content in liver0.30.30.8-0.3-0.90.1
Rb content in liver1.41.72.5-0.91.61.4
Se content in liver0.60.71.0-0.90.61.0
Sr content in liver1.21.11.40.9-1.2-1.1
Zn content in liver3.74.15.1-2.21.52.3