Cited2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000056940 0.04 0.02 7.1e-05 0.02 0.04 0.04 0.03 3.7e-03 4.1e-05 7.2e-05 2.0e-04
2 Liver gene expression ENSRNOG00000056940 0.1 0.05 6.1e-11 0.07 0.1 0.11 0.11 1.8e-08 1.9e-11 2.3e-12 3.5e-12
3 NAcc gene expression ENSRNOG00000056940 0.13 0.06 3.4e-06 0.1 0.07 0.09 0.09 1.5e-07 7.2e-06 6.3e-07 2.3e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.61.93.10.0-1.81.6
BMI without tail0.30.61.1-0.91.10.1
Body weight0.62.53.8-1.91.6-1.0
Epididymis fat weight0.20.40.6-0.80.4-0.6
Glucose0.91.42.6-0.0-1.31.6
Heart weight0.60.82.10.10.7-1.4
Left kidney weight0.71.92.8-1.61.7-0.3
Right kidney weight2.05.810.0-3.22.7-0.4
Tail length5.416.329.4-3.05.4-3.2
Length with tail2.910.716.8-2.74.1-2.9
Length without tail0.40.91.2-1.10.8-0.9
Liver weight, left0.30.51.2-1.10.20.3
Liver weight, right0.61.12.6-1.60.7-0.3
Parametrial fat weight0.00.00.1-0.1-0.00.2
Retroperitoneal fat weight0.93.07.5-1.00.7-2.7
Intraocular pressure0.71.02.4-1.60.80.1
Extensor digitorum longus weight0.93.76.1-2.52.1-0.7
Soleus weight0.92.54.3-1.72.1-0.7
Tibialis anterior weight2.79.213.9-3.63.7-0.9
Tibia length0.20.61.40.40.5-1.2
Number of licking bursts0.20.20.60.7-0.3-0.2
Food consumed during 24 hour testing period0.30.40.7-0.70.8-0.1
Times rat made contact with spout0.10.10.2-0.5-0.3-0.2
Mean time between licks in bursts0.00.00.10.2-0.00.3
Mean num. licks in bursts0.30.40.9-1.00.20.4
Std. dev. time between licks in bursts0.60.81.4-0.90.41.2
Water consumed over 24 hours0.50.61.5-0.40.5-1.2
Indifference point 0 sec2.64.28.3-2.91.61.3
Indifference point AUC1.61.92.40.9-1.61.5
Indifference point function ln k3.14.46.2-1.12.4-2.5
Indifference point function log k3.14.46.2-1.12.4-2.5
Delay discounting total patch changes 0 sec2.13.46.7-2.61.61.0
Delay discounting total patch changes 12 sec2.93.99.4-1.4-0.33.1
Delay discounting total patch changes 18 sec2.12.76.5-1.1-0.72.6
Delay discounting total patch changes 24 sec1.51.92.6-1.60.91.6
Delay discounting total patch changes 6 sec2.94.48.9-2.00.43.0
Delay discounting time to switch 0 sec0.71.01.60.7-1.01.3
Delay discounting water rate 0 sec1.72.64.8-1.01.4-2.2
Delay discounting water rate 12 sec1.72.55.5-0.61.3-2.4
Delay discounting water rate 18 sec2.73.64.0-1.72.0-2.0
Delay discounting water rate 24 sec0.81.12.7-1.60.7-0.4
Delay discounting water rate 6 sec2.53.75.1-1.62.3-1.8
Locomotor activity0.60.92.7-0.2-0.1-1.7
Locomotor testing distance0.50.82.2-0.30.2-1.5
Locomotor testing rearing0.20.41.0-1.00.20.2
Light reinforcement 10.00.10.20.2-0.2-0.4
Light reinforcement 21.92.55.6-0.01.3-2.4
Reaction time number correct3.44.96.8-2.62.6-1.1
Reaction time mean minus median1.62.14.01.4-2.00.6
Reaction time mean minus median AUC2.73.55.61.7-2.41.4
Reaction time num false alarms0.50.61.30.6-0.51.1
Reaction time num false alarms AUC0.50.70.80.9-0.80.9
Reaction time trials correct on left3.44.96.8-2.62.6-1.1
Reaction time trials on left3.34.76.7-2.62.5-1.0
Reaction time mean1.11.52.31.1-1.51.1
Reaction time mean AUC1.11.42.21.1-1.50.9
Median of all reaction times0.60.80.90.8-0.90.9
Reaction time omissions2.63.68.40.5-1.42.9
Reaction time false alarm rate1.82.63.61.9-1.71.1
Reaction time premature initiation rate1.21.63.7-0.11.0-1.9
Reaction time premature initiations2.63.74.8-1.42.2-2.1
Std. dev. reaction times2.23.05.41.4-2.31.4
Reaction time trials completed3.34.76.7-2.62.5-1.0
Reaction time trials AUC3.14.46.2-2.52.5-1.0
Social response proportion0.10.10.4-0.60.1-0.0
Social responses0.40.51.10.0-0.51.0
Social time1.21.53.7-0.9-0.31.9
Conditioned locomotion0.10.10.3-0.00.30.5
Cocaine response after cond. corrected0.50.61.20.31.1-0.6
Cocaine response after cond. not corrected1.51.73.10.41.3-1.8
Cocaine response before conditioning1.01.23.60.10.1-1.9
Saline control response2.73.76.2-1.32.5-1.8
Condit. Reinf. active minus inactive responses0.81.01.1-1.00.9-1.0
Condit. Reinf. active-inactive response ratio0.30.30.7-0.80.1-0.4
Condit. Reinf. active responses1.31.82.2-1.11.5-1.5
Condit. Reinf. inactive responses0.60.81.7-0.31.3-0.7
Condit. Reinf. lever presses1.11.53.3-0.81.8-0.7
Condit. Reinf. lever reinforcers received1.52.12.7-1.21.6-1.4
Pavlov. Cond. lever latency0.30.30.6-0.60.10.8
Pavlov. Cond. magazine entry latency0.10.20.40.30.10.6
Pavlov. Cond. change in total contacts0.20.30.80.20.4-0.9
Pavlov. Cond. index score0.00.00.10.20.3-0.0
Pavlov. Cond. latency score0.10.10.30.10.5-0.4
Pavlov. Cond. lever contacts0.00.10.10.30.3-0.2
Pavlov. Cond. magazine entry number0.70.91.21.1-1.0-0.7
Pavlov. Cond. intertrial magazine entries0.00.00.00.2-0.1-0.2
Pavlov. Cond. lever-magazine prob. diff.0.10.10.30.50.1-0.1
Pavlov. Cond. response bias0.10.10.20.20.10.4
Conditioned reinforcement - actives1.01.02.0-0.40.9-1.4
Conditioned reinforcement - inactives0.20.20.4-0.4-0.30.6
Conditioned locomotion0.81.01.5-1.21.0-0.7
Intermittent access intake day 1-15 change0.80.81.10.6-0.91.1
Intermittent access intake escalation0.40.41.2-0.2-0.11.1
Intermittent access intake escalation 20.20.20.60.0-0.10.8
Intermitt. access day 1 inactive lever presses0.30.30.70.50.2-0.8
Intermitt. access day 15 inactive lever presses0.20.30.40.4-0.50.7
Intermitt. access escalation Index1.81.62.7-1.51.6-0.2
Intermittent access day 1 total infusions0.20.20.4-0.60.5-0.2
Intermittent access day 15 total infusions0.80.91.4-1.20.80.9
Intermittent access terminal intake (last 3 days)0.40.40.6-0.80.70.3
Intermittent access total infusions1.11.21.8-1.31.3-0.1
Intermittent access day 1 locomotion0.20.20.50.0-0.1-0.7
Intermittent access day 15 total locomotion0.50.51.20.6-1.10.2
Intermittent access total locomotion0.20.20.40.2-0.7-0.3
Intermittent access standard deviation0.10.20.3-0.30.6-0.2
Cocaine induced anxiety3.94.59.3-3.12.0-0.1
Post-drug Anxiety1.71.94.5-2.10.90.4
Baseline Anxiety1.51.62.31.5-1.30.9
Lifetime Intake2.02.33.6-1.81.9-0.2
Incentive Sensitization - Responses0.50.51.0-0.70.11.0
Incentive Sensitization - Breakpoint0.30.30.8-0.4-0.10.9
Progressive ratio test 1 active lever presses0.10.10.10.4-0.1-0.2
Progressive ratio test 1 breakpoint0.10.10.20.5-0.2-0.4
Progressive ratio test 1 inactive lever presses0.40.40.91.0-0.3-0.4
Progressive ratio test 2 active lever presses0.10.10.3-0.50.40.1
Progressive ratio test 2 breakpoint0.10.10.2-0.40.40.0
Progressive ratio test 2 inactive lever presses0.40.41.2-0.1-0.01.1
Total sessions with >9 infusions0.50.50.8-0.90.80.3
Short access day 1 total inactive lever presses0.30.30.4-0.40.7-0.6
Short access day 10 total inactive lever presses0.50.61.11.0-0.7-0.3
Short access day 1 total infusions2.62.74.2-2.02.0-0.1
Short access day 10 total infusions1.01.11.5-0.91.2-1.0
Short access total infusions1.92.13.3-1.71.8-0.2
Short access day 1 locomotion0.10.10.10.3-0.4-0.2
Short access day 10 total locomotion0.50.61.7-0.2-0.0-1.3
Short access total locomotion0.70.71.30.6-0.7-1.1
Compulsive drug intake0.00.00.0-0.00.1-0.1
One hour access (0.3 mA shock)0.40.51.0-0.71.0-0.3
One hour access (shock baseline)0.80.91.6-1.01.3-0.5
Number of responses in last shaping day1.21.33.60.30.4-1.9
Context. condit. distance diff. score1.01.21.9-1.41.1-0.7
Locomotion velocity, session 11.41.52.51.3-1.6-0.7
Locomotion distance, session 10.81.11.51.2-0.9-0.9
Locomotion velocity, session 21.72.03.11.8-1.3-1.1
Locomotion distance, session 20.81.12.41.6-0.9-0.0
Locomotion velocity, session 30.91.01.51.1-1.20.5
Locomotion distance, session 31.31.42.41.1-0.91.5
Stereotopy head waving bouts, day 30.60.81.7-1.30.30.6
Stereotopy head waving duration, day 31.11.43.6-1.90.60.4
Locomotion velocity, session 70.60.71.3-0.50.6-1.1
Locomotion distance, session 70.30.40.8-0.70.9-0.1
Stereotopy head waving bouts, day 71.61.92.80.2-1.71.7
Stereotopy head waving duration, day 70.60.81.3-0.2-1.11.0
Locomotion velocity, session 80.10.10.2-0.1-0.4-0.1
Locomotion distance, session 80.20.30.30.5-0.5-0.6
Degree of sensitization distance2.72.74.0-2.01.7-1.1
Degree of sensitization stereotypy1.82.03.20.7-1.81.5
Condit. Reinf. active minus inactive responses0.40.40.70.7-0.8-0.4
Condit. Reinf. active-inactive response ratio0.10.10.20.0-0.2-0.4
Condit. Reinf. active responses0.30.40.60.7-0.7-0.1
Condit. Reinf. inactive responses0.10.10.30.2-0.20.6
Incentive salience index mean0.70.81.40.9-0.5-1.2
Condit. Reinf. lever presses0.81.13.10.40.3-1.8
Time in familiar zone, hab. session 10.80.81.3-0.41.2-0.9
Time in novel zone, hab. session 10.60.61.0-0.2-0.91.0
Total zone transitions, hab. session 12.02.85.01.7-2.2-0.5
Total locomotion distance, hab. session 10.40.61.30.8-1.1-0.1
Locomotion velocity, hab. session 10.40.60.90.8-1.0-0.3
Time in familiar zone, hab. session 20.80.92.4-0.1-0.51.5
Time in novel zone, hab. session 20.60.61.2-0.30.7-1.1
Total zone transitions, hab. session 21.72.23.81.5-0.7-1.9
Total locomotion distance, hab. session 21.21.63.80.90.6-1.9
Locomotion velocity, hab. session 21.52.04.41.10.6-2.1
Novel to familiar place preference ratio1.51.62.2-1.31.5-0.9
Novelty place preference1.11.11.4-1.11.2-0.8
Time in novel zone, NPP test1.01.11.5-1.21.1-0.8
Total zone transitions, NPP test0.91.32.61.6-1.1-0.5
Total locomotion distance, NPP test0.20.30.80.90.1-0.1
Locomotion velocity, NPP test0.40.51.51.2-0.20.4
Pavlov. Cond. lever latency1.21.52.9-1.20.31.7
Pavlov. Cond. magazine entry latency0.10.10.20.00.1-0.4
Pavlov. Cond. change in total contacts0.40.40.70.20.6-0.9
Pavlov. Cond. index score0.40.51.30.50.1-1.1
Pavlov. Cond. latency score0.40.51.20.50.1-1.1
Pavlov. Cond. lever contacts1.11.33.10.80.0-1.8
Pavlov. Cond. magazine entry number0.00.00.0-0.20.10.1
Pavlov. Cond. intertrial magazine entries0.40.50.9-0.10.7-1.0
Pavlov. Cond. lever-magazine prob. diff.0.60.72.00.40.2-1.4
Pavlov. Cond. response bias0.70.92.10.8-0.1-1.4
Bone: apparent density2.23.79.20.51.3-3.0
Bone surface3.96.814.9-0.12.3-3.9
Bone volume3.25.512.4-0.12.0-3.5
Bone: connectivity density3.45.413.51.11.2-3.7
Bone: cortical apparent density1.41.83.41.1-1.80.8
Bone: cortical area2.03.03.9-1.31.8-2.0
Bone: cortical porosity0.30.30.6-0.30.5-0.7
Bone: cortical porosity0.30.30.4-0.70.6-0.4
Bone: cortical thickness0.50.81.9-0.50.5-1.4
Bone: cortical thickness0.30.40.70.5-0.8-0.3
Bone: cortical tissue density1.72.24.01.2-2.01.0
Bone: elastic displacement4.95.68.52.9-2.90.2
Bone: elastic work1.72.23.61.7-1.9-0.4
Bone: endosteal estimation0.40.92.0-0.91.4-0.2
Bone: endosteal perimeter1.42.94.1-0.82.0-2.0
Bone: final force1.21.92.4-1.21.4-1.6
Bone: final moment0.61.01.4-0.90.9-1.2
Bone: marrow area0.51.02.1-0.91.4-0.3
Bone: maximum diameter0.91.72.9-1.41.7-0.5
Bone: maximum force0.81.42.2-0.71.2-1.5
Bone: maximum moment0.30.61.1-0.40.7-1.0
Bone: minimum diameter2.75.17.0-1.72.6-2.3
Bone: periosteal estimation1.53.04.8-1.52.2-1.4
Bone: periosteal perimeter3.76.19.2-1.32.7-3.0
Bone: post-yield work1.01.32.1-1.31.50.6
Bone: stiffness1.42.32.5-1.31.6-1.6
Bone: tissue strength0.80.82.20.2-0.41.5
Bone: trabecular number3.14.99.50.12.3-3.1
Bone: trabecular spacing2.32.96.30.2-1.62.5
Bone: trabecular thickness2.93.67.51.7-0.7-2.7
Bone: trabecular tissue density0.91.33.1-0.6-0.71.8
Breakpoint value in progressive ratio session1.01.12.2-1.00.01.5
Distance traveled before self-admin0.60.71.2-1.10.9-0.3
Distance traveled after self-admin0.10.10.40.1-0.0-0.6
Delta time in closed arm before/after self-admin0.20.20.4-0.60.4-0.4
Delta time in open arm before/after self-admin1.71.72.01.4-1.31.1
Diff in mean of infusions in LGA sessions2.63.04.7-2.22.0-0.4
Extinction: sum of active levers before priming0.30.30.7-0.50.10.9
Active lever presses in extinction session 61.11.01.90.3-1.01.4
Delta distance traveled before/after self-admin0.90.91.41.2-1.0-0.6
Delta ambulatory time before/after self-admin0.60.71.11.1-0.9-0.3
Time in closed arm before self-admin0.80.92.6-0.30.11.6
Time in closed arm after self-admin0.30.41.0-0.20.21.0
Time in open arm before self-admin2.02.23.4-1.21.8-1.3
Time in open arm after self-admin0.00.00.10.30.1-0.1
Sum of active levers in priming session hrs 5-60.70.71.1-0.50.8-1.0
Time to tail flick, vehicle, before self-admin0.30.30.5-0.70.7-0.1
Time to tail flick, vehicle, after self-admin0.80.91.00.8-1.01.0
Time to tail flick, test, before self-admin0.40.40.60.2-0.70.8
Time to tail flick, test, after self-admin0.90.91.81.4-1.00.1
Delta time to tail flick, vehicle, before/after SA2.42.34.02.0-1.70.3
Delta time to tail flick, test, before/after SA0.30.20.60.30.2-0.8
Ambulatory time before self-admin0.70.71.3-1.10.8-0.5
Ambulatory time after self-admin0.30.30.90.20.0-0.9
Total heroin consumption0.70.81.9-0.1-0.61.4
Area under the delay curve0.00.00.00.00.10.0
Delay disc. indifference point, 0s delay0.60.70.9-0.80.9-0.8
Delay disc. indifference point, 16s delay0.00.00.10.10.20.3
Delay disc. indifference point, 2s delay0.91.01.81.1-0.2-1.3
Delay disc. indifference point, 24s delay2.12.13.7-1.91.11.2
Delay disc. indifference point, 4s delay0.20.20.50.2-0.70.0
Delay disc. indifference point, 8s delay0.10.10.1-0.3-0.10.2
Delay discount exponential model param0.00.00.0-0.00.0-0.2
Delay discount hyperbolic model param0.00.00.0-0.10.10.0
Fecal boli incidents, locomotor time 10.30.30.7-0.50.9-0.2
Change in fecal boli incidents, locomotor task1.00.91.4-1.20.21.2
Time >=10cm from walls, locomotor time 10.10.10.30.1-0.50.3
Bouts of movement, locomotor time 11.61.73.20.3-1.41.8
Total resting periods, locomotor time 11.51.63.4-0.0-1.21.8
Rest time, locomotor task time 10.91.02.4-0.3-0.71.5
Distance moved, locomotor task time 10.10.10.1-0.10.4-0.4
Vertical activity count, locomotor time 10.10.10.20.30.3-0.4
Time >=10cm from walls, locomotor time 20.20.20.50.30.1-0.7
Bouts of movement, locomotor time 20.30.30.6-0.2-0.80.5
Total resting periods, locomotor time 20.50.50.9-0.3-0.80.9
Rest time, locomotor task time 22.83.27.8-1.3-0.52.8
Distance moved, locomotor task time 20.60.71.90.00.4-1.4
Vertical activity count, locomotor time 20.30.30.50.70.2-0.7
Weight adjusted by age0.40.50.70.8-0.2-0.8
Seeking ratio, delayed vs. immediate footshock0.40.40.60.80.4-0.7
Locomotion in novel chamber1.11.33.4-0.20.7-1.8
Locomotion in novel chamber post-restriction2.02.34.2-2.01.5-0.8
Progressive ratio0.70.81.31.1-0.9-0.6
Food seeking constrained by brief footshock0.40.50.80.9-0.70.4
Seeking ratio, punishment vs. effort0.00.10.2-0.00.10.4
Run reversals in cocaine runway, females0.40.40.7-0.40.4-0.9
Run reversals in cocaine runway, males1.81.72.90.8-1.21.7
Latency to leave start box in cocaine runway0.80.91.51.0-0.1-1.2
Latency to leave start box in cocaine runway, F0.10.10.10.00.3-0.3
Latency to leave start box in cocaine runway, M3.02.85.81.6-0.2-2.4
Cd content in liver0.20.30.40.6-0.60.3
Co content in liver0.20.20.20.4-0.40.4
Cu content in liver0.10.10.2-0.20.40.0
Fe content in liver0.40.51.21.1-0.40.2
K content in liver1.51.52.21.4-1.50.6
Mg content in liver0.10.10.1-0.20.10.3
Mn content in liver0.91.11.7-0.61.3-1.1
Na content in liver0.10.10.1-0.40.3-0.2
Rb content in liver1.41.74.9-0.1-0.42.2
Se content in liver0.10.20.30.30.6-0.3
Sr content in liver0.80.71.40.6-0.6-1.2
Zn content in liver0.20.20.5-0.70.40.2