Arap2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000056826 0.03 0.03 7.5e-03 0.02 -0 0 0 9.2e-03 9.3e-01 1.3e-01 2.8e-01
2 Brain mRNA stability ENSRNOG00000056826 0.21 0.17 5.4e-15 0.14 -0 0.14 0.01 7.5e-13 5.6e-01 8.2e-13 6.7e-02
3 NAcc mRNA stability ENSRNOG00000056826 0.68 0.15 4.5e-05 0.05 0.07 0.06 0.05 1.2e-04 5.5e-06 4.2e-05 1.3e-04
4 PL mRNA stability ENSRNOG00000056826 0.07 0.06 1.8e-04 0.04 0.04 0.04 0.04 5.6e-04 1.0e-03 7.9e-04 1.0e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.92.95.7-1.4-1.5-2.4-1.4
BMI without tail0.40.82.30.60.11.50.7
Body weight1.25.18.3-2.0-1.9-2.9-2.1
Epididymis fat weight1.84.38.7-1.8-1.5-3.0-1.7
Glucose0.50.71.50.21.1-1.20.2
Heart weight1.82.63.6-1.9-1.9-0.3-1.8
Left kidney weight1.33.66.4-1.7-1.4-2.5-1.8
Right kidney weight0.30.91.4-1.2-1.0-0.3-1.2
Tail length0.00.10.30.1-0.20.50.2
Length with tail0.41.41.9-1.1-0.9-1.4-1.2
Length without tail1.94.28.1-1.8-1.1-2.9-2.0
Liver weight, left1.32.24.7-1.2-0.8-2.2-1.4
Liver weight, right0.30.51.4-0.7-0.2-1.2-0.4
Parametrial fat weight0.10.30.6-0.8-0.40.0-0.5
Retroperitoneal fat weight0.20.62.1-0.5-0.31.4-0.4
Intraocular pressure1.01.45.1-0.5-0.4-2.2-0.4
Extensor digitorum longus weight2.28.710.6-2.5-3.1-3.2-2.9
Soleus weight0.10.20.5-0.3-0.7-0.1-0.4
Tibialis anterior weight2.27.613.1-2.6-3.6-1.5-2.9
Tibia length0.51.32.41.11.50.71.1
Number of licking bursts0.30.40.50.60.5-0.70.6
Food consumed during 24 hour testing period0.10.10.3-0.6-0.20.3-0.3
Times rat made contact with spout2.52.93.4-1.8-1.7-1.4-1.9
Mean time between licks in bursts2.83.85.42.02.30.82.3
Mean num. licks in bursts1.82.23.4-1.7-1.60.1-1.8
Std. dev. time between licks in bursts0.50.60.80.60.8-0.60.9
Water consumed over 24 hours1.41.72.2-1.5-1.1-1.3-1.3
Indifference point 0 sec2.13.34.22.01.81.32.0
Indifference point AUC0.40.40.7-0.9-0.60.1-0.8
Indifference point function ln k3.04.25.72.01.82.42.0
Indifference point function log k3.04.25.72.01.82.42.0
Delay discounting total patch changes 0 sec2.43.95.02.22.11.22.2
Delay discounting total patch changes 12 sec0.71.03.40.40.41.80.4
Delay discounting total patch changes 18 sec1.01.32.4-1.0-0.9-1.5-1.0
Delay discounting total patch changes 24 sec0.10.20.5-0.2-0.0-0.7-0.2
Delay discounting total patch changes 6 sec0.40.61.10.61.1-0.50.9
Delay discounting time to switch 0 sec7.611.616.8-3.1-3.0-4.1-3.3
Delay discounting water rate 0 sec5.48.711.52.72.73.42.9
Delay discounting water rate 12 sec3.65.57.32.72.51.22.7
Delay discounting water rate 18 sec5.57.312.62.22.43.62.4
Delay discounting water rate 24 sec1.62.23.21.51.80.61.7
Delay discounting water rate 6 sec5.37.710.33.03.11.43.2
Locomotor activity1.01.73.3-1.2-1.8-0.2-1.4
Locomotor testing distance0.60.91.4-0.9-1.2-0.2-1.1
Locomotor testing rearing0.91.53.5-0.8-0.9-1.9-1.0
Light reinforcement 11.22.38.40.50.12.90.7
Light reinforcement 21.11.42.8-1.1-1.70.8-1.0
Reaction time number correct1.01.54.1-0.9-0.72.0-0.7
Reaction time mean minus median0.70.91.3-1.1-1.1-0.6-0.9
Reaction time mean minus median AUC1.62.13.7-1.6-1.90.1-1.4
Reaction time num false alarms5.57.615.52.22.23.92.3
Reaction time num false alarms AUC3.65.013.41.71.23.71.6
Reaction time trials correct on left1.01.54.1-0.9-0.72.0-0.7
Reaction time trials on left1.11.64.5-0.9-0.72.1-0.7
Reaction time mean0.91.24.4-0.5-0.3-2.1-0.3
Reaction time mean AUC1.31.76.4-0.5-0.3-2.5-0.3
Median of all reaction times0.70.93.20.30.5-1.80.4
Reaction time omissions0.20.30.7-0.4-0.50.8-0.3
Reaction time false alarm rate2.23.24.22.01.51.61.8
Reaction time premature initiation rate0.50.71.2-1.1-0.60.6-0.9
Reaction time premature initiations1.72.44.4-1.6-1.12.1-1.2
Std. dev. reaction times2.13.03.7-1.9-1.9-1.3-1.7
Reaction time trials completed1.11.64.5-0.9-0.72.1-0.7
Reaction time trials AUC1.01.44.8-0.7-0.42.2-0.5
Social response proportion1.81.94.7-1.1-0.9-2.2-1.0
Social responses0.70.91.5-0.9-0.8-1.2-0.6
Social time0.00.00.10.10.00.20.1
Conditioned locomotion0.20.20.7-0.0-0.20.8-0.2
Cocaine response after cond. corrected2.93.24.2-2.0-2.1-0.8-2.0
Cocaine response after cond. not corrected2.32.63.0-1.7-1.7-1.2-1.7
Cocaine response before conditioning0.91.13.30.40.6-1.80.6
Saline control response4.25.56.42.32.52.12.5
Condit. Reinf. active minus inactive responses0.91.12.40.70.9-1.60.9
Condit. Reinf. active-inactive response ratio1.21.23.50.50.7-1.90.8
Condit. Reinf. active responses1.31.82.31.31.5-1.11.5
Condit. Reinf. inactive responses0.60.71.11.01.10.20.9
Condit. Reinf. lever presses0.81.13.00.70.7-1.70.7
Condit. Reinf. lever reinforcers received1.31.82.41.31.6-0.91.5
Pavlov. Cond. lever latency1.21.64.8-0.7-0.82.2-0.7
Pavlov. Cond. magazine entry latency0.60.72.1-0.5-0.3-1.5-0.4
Pavlov. Cond. change in total contacts1.21.76.8-0.20.1-2.6-0.1
Pavlov. Cond. index score0.70.92.70.40.5-1.60.5
Pavlov. Cond. latency score0.50.72.50.10.3-1.60.3
Pavlov. Cond. lever contacts1.52.17.60.50.6-2.80.5
Pavlov. Cond. magazine entry number0.40.51.10.70.41.10.4
Pavlov. Cond. intertrial magazine entries4.76.06.42.52.42.42.4
Pavlov. Cond. lever-magazine prob. diff.0.70.92.40.50.6-1.60.6
Pavlov. Cond. response bias1.11.54.80.60.7-2.20.6
Conditioned reinforcement - actives0.90.91.4-1.2-0.90.6-1.0
Conditioned reinforcement - inactives4.85.519.00.91.14.40.9
Conditioned locomotion0.70.83.00.20.31.70.2
Intermittent access intake day 1-15 change5.65.514.5-1.6-1.6-3.8-1.6
Intermittent access intake escalation3.93.910.6-1.2-1.3-3.3-1.3
Intermittent access intake escalation 23.83.810.0-1.2-1.4-3.2-1.3
Intermitt. access day 1 inactive lever presses2.72.910.40.70.73.20.6
Intermitt. access day 15 inactive lever presses2.52.710.8-0.10.0-3.3-0.2
Intermitt. access escalation Index5.75.120.10.30.54.50.3
Intermittent access day 1 total infusions0.10.10.4-0.2-0.1-0.7-0.3
Intermittent access day 15 total infusions1.82.14.9-1.0-1.0-2.2-1.1
Intermittent access terminal intake (last 3 days)0.10.10.1-0.3-0.30.2-0.3
Intermittent access total infusions0.30.30.4-0.5-0.50.5-0.6
Intermittent access day 1 locomotion0.10.10.30.50.5-0.10.3
Intermittent access day 15 total locomotion0.90.91.30.90.91.10.8
Intermittent access total locomotion0.40.51.20.70.5-1.10.4
Intermittent access standard deviation0.90.91.6-0.8-0.8-1.3-0.9
Cocaine induced anxiety1.92.24.61.21.22.11.2
Post-drug Anxiety0.60.60.8-0.9-0.9-0.1-0.9
Baseline Anxiety5.76.19.7-2.2-2.2-3.1-2.2
Lifetime Intake0.60.61.8-0.5-0.51.3-0.5
Incentive Sensitization - Responses0.30.31.10.40.4-1.00.2
Incentive Sensitization - Breakpoint0.10.10.40.30.3-0.60.2
Progressive ratio test 1 active lever presses0.50.50.7-0.8-0.7-0.3-0.8
Progressive ratio test 1 breakpoint0.60.60.8-0.9-0.8-0.1-0.9
Progressive ratio test 1 inactive lever presses0.10.10.3-0.00.10.5-0.0
Progressive ratio test 2 active lever presses0.30.41.4-0.1-0.0-1.2-0.1
Progressive ratio test 2 breakpoint0.30.31.3-0.1-0.0-1.1-0.1
Progressive ratio test 2 inactive lever presses0.00.00.00.10.20.20.1
Total sessions with >9 infusions1.21.35.00.10.32.20.3
Short access day 1 total inactive lever presses7.58.428.51.31.35.31.3
Short access day 10 total inactive lever presses0.50.61.50.60.6-1.20.5
Short access day 1 total infusions0.70.83.0-0.2-0.21.7-0.1
Short access day 10 total infusions1.01.14.2-0.4-0.32.1-0.3
Short access total infusions1.31.44.7-0.6-0.62.2-0.5
Short access day 1 locomotion1.21.23.10.80.71.80.8
Short access day 10 total locomotion0.30.31.00.30.1-1.00.1
Short access total locomotion2.22.28.70.30.13.00.1
Compulsive drug intake0.90.93.40.20.2-1.80.1
One hour access (0.3 mA shock)1.51.86.1-0.7-0.5-2.5-0.6
One hour access (shock baseline)0.20.20.3-0.6-0.5-0.3-0.6
Number of responses in last shaping day0.70.71.20.81.00.41.1
Context. condit. distance diff. score0.60.81.2-1.0-0.4-0.8-1.1
Locomotion velocity, session 11.31.43.8-0.8-0.6-2.0-0.9
Locomotion distance, session 10.50.72.40.20.61.50.3
Locomotion velocity, session 22.83.36.01.31.82.51.5
Locomotion distance, session 20.20.20.40.30.60.70.3
Locomotion velocity, session 30.30.30.80.20.60.90.2
Locomotion distance, session 30.30.30.70.10.90.60.1
Stereotopy head waving bouts, day 30.10.10.2-0.2-0.5-0.2-0.1
Stereotopy head waving duration, day 30.00.00.10.1-0.2-0.30.2
Locomotion velocity, session 70.30.30.40.60.50.40.6
Locomotion distance, session 71.72.27.21.00.32.70.7
Stereotopy head waving bouts, day 72.52.95.01.52.20.81.8
Stereotopy head waving duration, day 70.91.12.50.71.6-0.61.0
Locomotion velocity, session 80.20.30.50.70.70.20.3
Locomotion distance, session 80.10.10.2-0.50.10.2-0.4
Degree of sensitization distance1.31.33.61.0-0.11.90.8
Degree of sensitization stereotypy2.42.65.01.42.20.71.7
Condit. Reinf. active minus inactive responses1.21.42.80.71.21.70.9
Condit. Reinf. active-inactive response ratio0.10.10.2-0.20.4-0.1-0.0
Condit. Reinf. active responses5.56.820.01.41.64.51.7
Condit. Reinf. inactive responses4.55.318.11.00.74.31.2
Incentive salience index mean1.92.37.10.70.92.70.9
Condit. Reinf. lever presses0.81.14.2-0.2-0.62.0-0.1
Time in familiar zone, hab. session 10.10.10.20.5-0.10.40.2
Time in novel zone, hab. session 10.10.10.1-0.40.3-0.2-0.2
Total zone transitions, hab. session 11.01.42.9-1.0-0.3-1.7-1.2
Total locomotion distance, hab. session 11.72.44.01.31.52.01.4
Locomotion velocity, hab. session 11.52.25.31.01.12.31.1
Time in familiar zone, hab. session 20.60.60.91.00.70.41.0
Time in novel zone, hab. session 20.60.60.9-0.7-0.71.0-0.7
Total zone transitions, hab. session 21.72.28.2-0.5-0.2-2.9-0.6
Total locomotion distance, hab. session 20.50.60.90.90.70.51.0
Locomotion velocity, hab. session 20.30.40.60.80.50.40.8
Novel to familiar place preference ratio2.72.83.51.81.91.31.6
Novelty place preference3.63.74.12.01.92.01.8
Time in novel zone, NPP test3.23.33.91.81.82.01.6
Total zone transitions, NPP test0.10.20.3-0.5-0.4-0.4-0.5
Total locomotion distance, NPP test4.46.215.61.81.44.01.9
Locomotion velocity, NPP test4.05.814.51.81.33.81.9
Pavlov. Cond. lever latency0.81.03.0-0.5-0.6-1.7-0.5
Pavlov. Cond. magazine entry latency0.40.50.80.90.70.40.7
Pavlov. Cond. change in total contacts5.55.915.41.81.33.91.8
Pavlov. Cond. index score0.50.61.10.80.61.10.7
Pavlov. Cond. latency score0.60.81.60.80.71.30.7
Pavlov. Cond. lever contacts0.20.30.70.40.40.80.4
Pavlov. Cond. magazine entry number0.60.70.9-1.0-0.9-0.6-0.9
Pavlov. Cond. intertrial magazine entries5.56.615.91.62.04.02.1
Pavlov. Cond. lever-magazine prob. diff.0.30.40.60.80.60.30.6
Pavlov. Cond. response bias0.20.20.30.60.6-0.10.5
Bone: apparent density0.50.81.31.10.70.41.1
Bone surface0.00.00.10.20.1-0.20.1
Bone volume1.62.73.61.81.21.91.6
Bone: connectivity density0.60.91.4-0.8-0.9-1.2-0.8
Bone: cortical apparent density1.01.31.9-1.0-1.0-1.4-1.0
Bone: cortical area0.20.30.70.2-0.70.8-0.2
Bone: cortical porosity0.91.01.9-1.1-1.00.1-1.4
Bone: cortical porosity1.21.32.1-1.2-1.20.3-1.4
Bone: cortical thickness1.01.64.31.10.42.11.0
Bone: cortical thickness0.80.91.31.20.51.01.0
Bone: cortical tissue density1.21.62.5-1.1-1.1-1.6-1.2
Bone: elastic displacement0.50.61.20.51.10.70.5
Bone: elastic work0.60.72.90.00.21.7-0.0
Bone: endosteal estimation1.02.12.6-1.2-1.4-1.6-1.6
Bone: endosteal perimeter0.61.22.2-0.1-1.4-1.5-0.6
Bone: final force0.61.02.3-0.6-1.50.2-1.1
Bone: final moment0.71.22.2-0.9-1.50.1-1.3
Bone: marrow area1.12.33.0-1.3-1.5-1.7-1.6
Bone: maximum diameter0.30.62.1-0.0-1.4-0.2-0.5
Bone: maximum force0.61.02.0-0.7-1.40.6-1.1
Bone: maximum moment0.71.32.1-1.1-1.50.3-1.4
Bone: minimum diameter0.10.10.30.1-0.50.4-0.2
Bone: periosteal estimation0.40.91.5-0.6-1.2-0.7-1.1
Bone: periosteal perimeter0.20.41.50.2-1.20.1-0.2
Bone: post-yield work1.01.44.40.60.62.10.7
Bone: stiffness0.60.91.3-0.6-1.1-1.1-0.9
Bone: tissue strength0.50.51.8-0.30.11.3-0.2
Bone: trabecular number0.30.41.10.40.1-1.00.6
Bone: trabecular spacing1.01.34.80.5-0.12.20.2
Bone: trabecular thickness3.54.25.72.41.71.72.3
Bone: trabecular tissue density1.72.43.71.90.61.81.4
Breakpoint value in progressive ratio session1.01.11.6-1.1-1.30.2-1.2
Distance traveled before self-admin2.42.53.21.81.61.31.6
Distance traveled after self-admin1.21.42.11.41.20.61.2
Delta time in closed arm before/after self-admin0.10.10.20.20.4-0.20.4
Delta time in open arm before/after self-admin0.30.20.4-0.5-0.6-0.2-0.6
Diff in mean of infusions in LGA sessions1.11.31.9-0.9-1.11.4-1.0
Extinction: sum of active levers before priming0.70.72.4-0.4-0.41.5-0.4
Active lever presses in extinction session 61.91.85.5-0.5-0.92.3-0.8
Delta distance traveled before/after self-admin0.10.10.2-0.1-0.2-0.5-0.2
Delta ambulatory time before/after self-admin0.30.40.6-0.5-0.5-0.8-0.5
Time in closed arm before self-admin0.50.61.4-0.6-0.5-1.2-0.5
Time in closed arm after self-admin0.80.91.4-1.0-0.8-1.2-0.8
Time in open arm before self-admin0.20.20.50.30.40.70.4
Time in open arm after self-admin0.30.30.50.70.60.10.7
Sum of active levers in priming session hrs 5-61.11.12.2-0.5-1.01.5-0.9
Time to tail flick, vehicle, before self-admin2.82.97.11.31.22.71.1
Time to tail flick, vehicle, after self-admin0.60.72.30.00.41.50.5
Time to tail flick, test, before self-admin0.00.00.1-0.30.00.30.1
Time to tail flick, test, after self-admin4.44.58.41.62.02.91.8
Delta time to tail flick, vehicle, before/after SA0.50.41.2-0.6-0.4-1.1-0.3
Delta time to tail flick, test, before/after SA1.21.11.31.11.20.81.0
Ambulatory time before self-admin2.22.36.01.01.12.41.1
Ambulatory time after self-admin0.20.20.40.70.4-0.40.5
Total heroin consumption2.73.311.80.80.43.40.6
Area under the delay curve0.80.81.1-1.0-1.0-0.3-1.1
Delay disc. indifference point, 0s delay1.21.33.0-0.8-0.9-1.7-1.0
Delay disc. indifference point, 16s delay0.40.40.5-0.6-0.6-0.5-0.7
Delay disc. indifference point, 2s delay2.62.98.2-1.1-1.1-2.9-1.0
Delay disc. indifference point, 24s delay1.01.01.2-1.1-1.0-0.9-1.0
Delay disc. indifference point, 4s delay0.91.01.5-1.0-1.20.2-1.2
Delay disc. indifference point, 8s delay0.70.81.3-0.8-0.71.1-0.8
Delay discount exponential model param0.60.60.90.90.90.20.9
Delay discount hyperbolic model param0.70.71.01.01.00.21.0
Fecal boli incidents, locomotor time 10.10.10.60.1-0.10.80.0
Change in fecal boli incidents, locomotor task6.96.524.00.61.04.90.9
Time >=10cm from walls, locomotor time 11.11.13.7-0.6-0.51.9-0.5
Bouts of movement, locomotor time 10.60.72.10.10.71.50.4
Total resting periods, locomotor time 11.21.32.60.51.31.60.9
Rest time, locomotor task time 10.40.41.30.30.41.10.5
Distance moved, locomotor task time 11.01.11.7-1.1-1.00.6-1.3
Vertical activity count, locomotor time 12.12.24.3-1.1-1.0-2.1-1.4
Time >=10cm from walls, locomotor time 20.91.02.6-0.7-0.6-1.6-0.6
Bouts of movement, locomotor time 20.40.40.6-0.6-0.80.4-0.7
Total resting periods, locomotor time 20.40.50.8-0.7-0.90.3-0.7
Rest time, locomotor task time 21.01.12.0-1.2-1.4-0.1-1.0
Distance moved, locomotor task time 21.21.45.4-0.10.42.3-0.1
Vertical activity count, locomotor time 20.20.20.4-0.4-0.20.6-0.6
Weight adjusted by age1.71.93.6-1.1-1.2-1.9-1.2
Seeking ratio, delayed vs. immediate footshock0.80.92.6-0.6-0.71.6-0.6
Locomotion in novel chamber2.43.011.00.40.73.30.5
Locomotion in novel chamber post-restriction6.07.226.20.81.05.10.8
Progressive ratio0.10.20.40.30.40.60.3
Food seeking constrained by brief footshock6.78.214.92.62.43.92.3
Seeking ratio, punishment vs. effort2.12.64.11.61.42.01.5
Run reversals in cocaine runway, females2.62.53.51.51.51.91.4
Run reversals in cocaine runway, males1.61.54.9-0.7-0.6-2.2-0.6
Latency to leave start box in cocaine runway0.90.93.50.30.2-1.90.2
Latency to leave start box in cocaine runway, F0.40.41.7-0.2-0.2-1.3-0.2
Latency to leave start box in cocaine runway, M0.50.50.60.70.6-0.80.6
Cd content in liver6.57.17.42.72.62.72.7
Co content in liver1.51.84.3-1.3-0.5-2.1-1.0
Cu content in liver4.25.18.62.32.91.02.3
Fe content in liver1.21.42.61.21.6-0.11.2
K content in liver0.30.30.30.50.60.50.3
Mg content in liver0.40.41.30.40.31.10.2
Mn content in liver0.10.10.30.20.3-0.60.1
Na content in liver1.01.12.30.81.50.80.9
Rb content in liver0.20.30.9-0.10.4-0.9-0.1
Se content in liver9.811.912.33.53.33.53.5
Sr content in liver0.20.20.5-0.10.2-0.7-0.2
Zn content in liver0.00.00.1-0.10.3-0.2-0.1