Dnaaf4

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain intron excision ratio chr8:73700709:73703207 0.03 0.02 5.8e-03 0.01 0.01 0 0.01 4.2e-02 3.1e-02 1.7e-01 2.8e-02
2 OFC gene expression ENSRNOG00000056654 0.18 0.11 6.5e-03 0.12 0.07 0.07 0.1 9.5e-04 8.2e-03 8.2e-03 2.2e-03
3 PL gene expression ENSRNOG00000056654 0.04 0.03 6.9e-03 0.02 0.02 0.01 0.01 8.7e-03 1.3e-02 4.7e-02 2.5e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail7.122.824.1-4.8-4.6-4.9
BMI without tail2.55.39.4-1.7-1.9-3.1
Body weight3.815.918.3-4.3-4.0-3.7
Epididymis fat weight0.10.20.40.60.30.4
Glucose0.50.70.9-0.7-0.9-0.9
Heart weight0.60.91.3-1.2-0.9-0.7
Left kidney weight2.88.09.5-3.1-3.0-2.4
Right kidney weight1.23.63.9-2.0-1.9-1.8
Tail length0.30.81.81.30.80.2
Length with tail0.10.50.7-0.8-0.9-0.3
Length without tail2.55.59.1-3.0-2.6-0.9
Liver weight, left0.91.42.1-0.9-1.2-1.4
Liver weight, right1.72.85.8-1.2-1.1-2.4
Parametrial fat weight0.61.21.61.31.01.0
Retroperitoneal fat weight0.00.00.00.20.1-0.1
Intraocular pressure0.00.00.0-0.0-0.20.1
Extensor digitorum longus weight7.429.933.4-5.4-5.2-5.8
Soleus weight15.545.254.1-6.5-6.3-7.4
Tibialis anterior weight13.948.050.6-6.9-7.1-6.8
Tibia length0.20.61.0-1.0-0.80.4
Number of licking bursts2.63.14.12.01.61.6
Food consumed during 24 hour testing period0.81.01.6-1.2-1.2-0.4
Times rat made contact with spout0.10.10.30.00.00.6
Mean time between licks in bursts1.01.41.51.11.21.2
Mean num. licks in bursts2.42.94.3-2.1-1.7-1.2
Std. dev. time between licks in bursts0.10.10.2-0.2-0.3-0.5
Water consumed over 24 hours0.20.30.80.10.20.9
Indifference point 0 sec0.10.10.2-0.3-0.5-0.2
Indifference point AUC1.72.03.11.61.80.4
Indifference point function ln k1.92.73.9-1.8-2.0-1.0
Indifference point function log k1.92.73.9-1.8-2.0-1.0
Delay discounting total patch changes 0 sec0.20.30.5-0.5-0.7-0.4
Delay discounting total patch changes 12 sec0.60.81.01.01.00.6
Delay discounting total patch changes 18 sec0.10.10.20.20.20.4
Delay discounting total patch changes 24 sec0.30.40.70.80.70.1
Delay discounting total patch changes 6 sec0.30.40.50.60.7-0.6
Delay discounting time to switch 0 sec0.61.01.10.91.01.0
Delay discounting water rate 0 sec2.13.33.9-1.9-2.0-1.5
Delay discounting water rate 12 sec3.65.36.8-2.3-2.6-2.0
Delay discounting water rate 18 sec0.50.60.8-0.9-0.9-0.5
Delay discounting water rate 24 sec0.20.30.50.50.50.7
Delay discounting water rate 6 sec0.40.50.8-0.8-0.9-0.3
Locomotor activity5.79.010.5-3.2-3.2-2.6
Locomotor testing distance3.66.07.4-2.7-2.7-1.9
Locomotor testing rearing0.81.31.5-1.2-1.2-1.0
Light reinforcement 12.13.84.5-2.1-1.9-1.8
Light reinforcement 20.30.41.30.10.01.1
Reaction time number correct1.92.83.5-1.6-1.6-1.9
Reaction time mean minus median0.50.60.80.80.70.9
Reaction time mean minus median AUC1.31.61.81.41.11.4
Reaction time num false alarms0.10.20.50.70.20.3
Reaction time num false alarms AUC0.00.10.10.3-0.2-0.2
Reaction time trials correct on left1.92.83.5-1.6-1.6-1.9
Reaction time trials on left1.92.73.5-1.5-1.5-1.9
Reaction time mean3.14.35.52.01.82.3
Reaction time mean AUC3.24.35.22.01.92.3
Median of all reaction times3.74.96.42.21.92.5
Reaction time omissions0.00.00.10.30.20.0
Reaction time false alarm rate0.71.01.51.20.81.0
Reaction time premature initiation rate0.60.81.6-0.6-0.6-1.3
Reaction time premature initiations1.92.74.2-1.4-1.4-2.0
Std. dev. reaction times2.02.73.11.71.51.8
Reaction time trials completed1.92.73.5-1.5-1.5-1.9
Reaction time trials AUC1.72.43.0-1.4-1.5-1.7
Social response proportion0.60.60.9-1.0-0.8-0.5
Social responses0.10.10.2-0.4-0.3-0.2
Social time0.20.20.5-0.5-0.7-0.1
Conditioned locomotion0.30.40.6-0.8-0.6-0.4
Cocaine response after cond. corrected6.37.09.2-2.8-3.0-2.1
Cocaine response after cond. not corrected4.44.96.6-2.4-2.6-1.6
Cocaine response before conditioning1.31.52.21.21.51.0
Saline control response0.00.00.0-0.1-0.20.2
Condit. Reinf. active minus inactive responses2.63.23.3-1.7-1.8-1.8
Condit. Reinf. active-inactive response ratio2.82.94.0-1.8-2.0-1.2
Condit. Reinf. active responses1.41.92.4-1.3-1.3-1.6
Condit. Reinf. inactive responses0.50.61.10.81.10.1
Condit. Reinf. lever presses0.20.30.80.1-0.10.9
Condit. Reinf. lever reinforcers received1.01.51.5-1.2-1.2-1.2
Pavlov. Cond. lever latency0.50.70.9-0.7-0.7-1.0
Pavlov. Cond. magazine entry latency3.74.35.92.01.72.4
Pavlov. Cond. change in total contacts0.81.21.31.01.11.1
Pavlov. Cond. index score1.41.92.61.31.11.6
Pavlov. Cond. latency score1.01.32.11.00.81.5
Pavlov. Cond. lever contacts0.30.40.60.60.60.8
Pavlov. Cond. magazine entry number3.23.94.8-2.0-1.7-2.2
Pavlov. Cond. intertrial magazine entries0.81.01.2-0.9-1.1-1.0
Pavlov. Cond. lever-magazine prob. diff.1.82.33.11.41.31.8
Pavlov. Cond. response bias1.42.02.01.41.41.4
Conditioned reinforcement - actives0.10.10.10.1-0.1-0.3
Conditioned reinforcement - inactives0.10.10.30.0-0.5-0.3
Conditioned locomotion0.10.10.20.30.30.5
Intermittent access intake day 1-15 change0.30.30.90.90.2-0.2
Intermittent access intake escalation0.60.61.51.20.40.1
Intermittent access intake escalation 20.10.10.30.1-0.3-0.6
Intermitt. access day 1 inactive lever presses0.20.20.40.60.10.5
Intermitt. access day 15 inactive lever presses0.10.10.20.20.10.4
Intermitt. access escalation Index1.81.63.0-1.7-1.2-0.6
Intermittent access day 1 total infusions0.50.51.40.40.11.2
Intermittent access day 15 total infusions0.80.91.61.30.41.0
Intermittent access terminal intake (last 3 days)0.40.50.60.80.30.8
Intermittent access total infusions0.50.51.00.8-0.11.0
Intermittent access day 1 locomotion1.11.11.81.00.71.4
Intermittent access day 15 total locomotion0.60.61.60.40.01.3
Intermittent access total locomotion0.10.10.2-0.0-0.40.4
Intermittent access standard deviation0.40.50.80.90.40.7
Cocaine induced anxiety0.50.60.80.80.90.3
Post-drug Anxiety3.53.95.42.32.31.1
Baseline Anxiety1.01.11.51.21.00.8
Lifetime Intake0.60.71.20.90.11.1
Incentive Sensitization - Responses2.02.02.9-1.5-1.7-0.9
Incentive Sensitization - Breakpoint1.61.62.4-1.4-1.5-0.9
Progressive ratio test 1 active lever presses0.10.10.4-0.0-0.6-0.2
Progressive ratio test 1 breakpoint0.00.00.10.3-0.20.1
Progressive ratio test 1 inactive lever presses1.01.01.81.30.41.0
Progressive ratio test 2 active lever presses0.60.71.4-0.6-1.2-0.4
Progressive ratio test 2 breakpoint0.91.02.1-0.9-1.4-0.5
Progressive ratio test 2 inactive lever presses0.40.51.30.5-0.11.1
Total sessions with >9 infusions0.20.20.40.6-0.2-0.2
Short access day 1 total inactive lever presses0.91.02.1-0.6-1.5-0.7
Short access day 10 total inactive lever presses0.40.40.80.70.20.9
Short access day 1 total infusions0.10.10.20.3-0.20.5
Short access day 10 total infusions0.70.81.40.90.41.2
Short access total infusions1.01.11.51.20.61.2
Short access day 1 locomotion0.10.10.1-0.1-0.2-0.3
Short access day 10 total locomotion0.20.20.4-0.6-0.6-0.0
Short access total locomotion0.50.51.00.60.41.0
Compulsive drug intake0.30.30.3-0.6-0.5-0.5
One hour access (0.3 mA shock)0.20.30.4-0.7-0.60.1
One hour access (shock baseline)0.30.30.80.20.10.9
Number of responses in last shaping day0.00.00.00.1-0.1-0.2
Context. condit. distance diff. score0.10.20.30.20.40.6
Locomotion velocity, session 11.01.11.3-0.9-1.0-1.2
Locomotion distance, session 10.30.40.60.70.80.2
Locomotion velocity, session 20.00.00.10.00.1-0.3
Locomotion distance, session 20.20.31.0-0.10.0-1.0
Locomotion velocity, session 30.20.20.30.60.6-0.2
Locomotion distance, session 33.03.34.02.01.91.5
Stereotopy head waving bouts, day 30.70.91.3-1.0-1.2-0.5
Stereotopy head waving duration, day 31.51.82.5-1.5-1.6-0.8
Locomotion velocity, session 70.91.01.01.01.01.0
Locomotion distance, session 71.62.02.61.61.61.0
Stereotopy head waving bouts, day 70.70.81.0-0.8-1.0-0.9
Stereotopy head waving duration, day 71.01.21.5-0.9-1.1-1.2
Locomotion velocity, session 80.20.20.6-0.3-0.2-0.8
Locomotion distance, session 80.50.81.41.01.20.3
Degree of sensitization distance0.00.00.00.10.10.1
Degree of sensitization stereotypy0.80.81.1-0.8-0.9-1.0
Condit. Reinf. active minus inactive responses0.80.91.81.01.30.4
Condit. Reinf. active-inactive response ratio0.40.51.00.40.51.0
Condit. Reinf. active responses0.91.12.01.01.4-0.4
Condit. Reinf. inactive responses1.01.21.40.91.1-1.2
Incentive salience index mean0.50.61.40.71.20.1
Condit. Reinf. lever presses0.30.41.00.51.0-0.1
Time in familiar zone, hab. session 10.00.00.1-0.10.10.2
Time in novel zone, hab. session 10.00.00.10.0-0.10.3
Total zone transitions, hab. session 10.40.60.90.90.90.3
Total locomotion distance, hab. session 10.20.30.40.60.6-0.1
Locomotion velocity, hab. session 10.10.10.10.40.4-0.3
Time in familiar zone, hab. session 20.10.10.10.40.10.2
Time in novel zone, hab. session 20.20.20.4-0.7-0.50.0
Total zone transitions, hab. session 20.30.40.90.50.9-0.5
Total locomotion distance, hab. session 20.20.30.50.20.5-0.7
Locomotion velocity, hab. session 20.20.20.30.20.6-0.6
Novel to familiar place preference ratio1.21.31.5-1.2-1.2-1.1
Novelty place preference1.51.51.8-1.3-1.2-1.1
Time in novel zone, NPP test1.92.02.4-1.6-1.5-1.2
Total zone transitions, NPP test0.10.20.30.20.4-0.6
Total locomotion distance, NPP test0.10.20.60.10.1-0.8
Locomotion velocity, NPP test0.20.30.40.60.6-0.4
Pavlov. Cond. lever latency0.40.51.0-0.7-1.00.2
Pavlov. Cond. magazine entry latency2.63.45.91.62.41.3
Pavlov. Cond. change in total contacts0.50.61.20.71.10.2
Pavlov. Cond. index score2.43.05.21.72.31.0
Pavlov. Cond. latency score1.92.54.41.62.10.7
Pavlov. Cond. lever contacts0.60.71.30.81.10.2
Pavlov. Cond. magazine entry number2.83.56.0-1.7-2.4-1.4
Pavlov. Cond. intertrial magazine entries0.20.30.70.40.2-0.8
Pavlov. Cond. lever-magazine prob. diff.2.12.64.61.62.20.8
Pavlov. Cond. response bias1.51.93.51.21.90.8
Bone: apparent density0.10.10.20.20.50.4
Bone surface0.20.40.5-0.7-0.5-0.6
Bone volume0.30.50.7-0.8-0.6-0.6
Bone: connectivity density1.42.23.11.61.81.1
Bone: cortical apparent density0.40.50.70.70.60.8
Bone: cortical area1.31.92.9-1.7-1.7-0.3
Bone: cortical porosity0.60.71.30.40.71.1
Bone: cortical porosity1.41.52.20.91.21.5
Bone: cortical thickness0.30.51.4-0.1-0.11.2
Bone: cortical thickness0.20.20.50.1-0.10.7
Bone: cortical tissue density0.50.60.70.80.70.9
Bone: elastic displacement0.10.10.1-0.2-0.3-0.2
Bone: elastic work0.00.10.1-0.2-0.30.2
Bone: endosteal estimation2.75.76.1-2.5-2.4-2.3
Bone: endosteal perimeter4.38.910.3-3.2-2.9-2.8
Bone: final force1.42.32.9-1.7-1.7-1.1
Bone: final moment1.21.92.7-1.6-1.6-0.7
Bone: marrow area2.96.26.7-2.6-2.5-2.4
Bone: maximum diameter4.07.29.1-3.0-3.0-2.0
Bone: maximum force1.42.53.3-1.8-1.7-1.2
Bone: maximum moment1.22.13.1-1.8-1.6-0.9
Bone: minimum diameter0.61.11.9-1.4-1.1-0.1
Bone: periosteal estimation2.95.97.3-2.7-2.6-1.9
Bone: periosteal perimeter3.35.46.3-2.5-2.3-2.2
Bone: post-yield work0.10.20.5-0.2-0.2-0.7
Bone: stiffness1.52.42.6-1.6-1.5-1.6
Bone: tissue strength1.11.11.80.90.81.4
Bone: trabecular number0.81.21.61.01.31.0
Bone: trabecular spacing0.00.10.10.30.20.1
Bone: trabecular thickness0.70.81.3-1.1-1.2-0.1
Bone: trabecular tissue density9.913.817.3-4.1-4.2-2.8
Breakpoint value in progressive ratio session0.00.00.10.20.2-0.1
Distance traveled before self-admin0.00.00.1-0.0-0.30.1
Distance traveled after self-admin2.22.53.5-1.6-1.9-1.2
Delta time in closed arm before/after self-admin0.20.20.3-0.5-0.60.1
Delta time in open arm before/after self-admin1.61.52.31.50.91.1
Diff in mean of infusions in LGA sessions0.40.51.3-0.30.0-1.1
Extinction: sum of active levers before priming0.70.70.90.90.71.0
Active lever presses in extinction session 60.10.10.10.30.30.2
Delta distance traveled before/after self-admin3.13.33.9-1.8-2.0-1.6
Delta ambulatory time before/after self-admin2.12.33.3-1.6-1.8-1.1
Time in closed arm before self-admin0.20.30.50.60.70.2
Time in closed arm after self-admin0.00.00.00.1-0.1-0.1
Time in open arm before self-admin2.02.13.0-1.7-1.6-1.0
Time in open arm after self-admin0.10.10.2-0.0-0.40.3
Sum of active levers in priming session hrs 5-60.10.10.2-0.2-0.5-0.2
Time to tail flick, vehicle, before self-admin1.21.22.11.21.4-0.1
Time to tail flick, vehicle, after self-admin0.60.71.0-1.0-0.9-0.4
Time to tail flick, test, before self-admin0.70.71.00.81.00.6
Time to tail flick, test, after self-admin1.41.52.21.51.01.1
Delta time to tail flick, vehicle, before/after SA1.00.91.4-1.2-1.20.3
Delta time to tail flick, test, before/after SA0.10.10.3-0.0-0.50.2
Ambulatory time before self-admin0.30.40.40.70.40.7
Ambulatory time after self-admin1.71.83.1-1.4-1.8-0.7
Total heroin consumption0.91.01.9-0.8-0.7-1.4
Area under the delay curve0.00.00.0-0.2-0.1-0.2
Delay disc. indifference point, 0s delay1.11.21.71.21.30.6
Delay disc. indifference point, 16s delay0.00.00.1-0.2-0.10.3
Delay disc. indifference point, 2s delay0.10.10.10.40.30.2
Delay disc. indifference point, 24s delay0.10.10.10.30.20.3
Delay disc. indifference point, 4s delay0.30.30.40.50.60.5
Delay disc. indifference point, 8s delay0.40.40.8-0.4-0.4-0.9
Delay discount exponential model param0.00.10.10.30.20.2
Delay discount hyperbolic model param0.00.00.00.10.00.1
Fecal boli incidents, locomotor time 10.20.20.4-0.10.50.6
Change in fecal boli incidents, locomotor task2.01.93.1-1.3-1.8-1.0
Time >=10cm from walls, locomotor time 10.60.60.9-0.8-0.6-0.9
Bouts of movement, locomotor time 10.10.10.3-0.5-0.1-0.2
Total resting periods, locomotor time 10.00.10.1-0.4-0.0-0.0
Rest time, locomotor task time 10.10.10.3-0.30.00.5
Distance moved, locomotor task time 10.30.30.70.80.4-0.1
Vertical activity count, locomotor time 10.10.10.10.40.30.1
Time >=10cm from walls, locomotor time 20.10.10.2-0.4-0.5-0.0
Bouts of movement, locomotor time 20.50.51.0-0.5-0.6-1.0
Total resting periods, locomotor time 20.60.61.2-0.5-0.6-1.1
Rest time, locomotor task time 20.20.30.50.20.50.7
Distance moved, locomotor task time 20.10.10.20.50.1-0.4
Vertical activity count, locomotor time 20.50.60.70.80.60.8
Weight adjusted by age6.57.37.5-2.7-2.7-2.7
Seeking ratio, delayed vs. immediate footshock1.11.31.5-1.2-1.0-1.2
Locomotion in novel chamber0.60.71.60.70.41.2
Locomotion in novel chamber post-restriction0.20.20.40.40.60.3
Progressive ratio0.60.71.20.61.10.7
Food seeking constrained by brief footshock0.70.81.5-0.6-0.8-1.2
Seeking ratio, punishment vs. effort3.44.25.1-1.7-2.3-2.2
Run reversals in cocaine runway, females0.20.20.2-0.5-0.50.1
Run reversals in cocaine runway, males0.40.41.10.00.1-1.0
Latency to leave start box in cocaine runway2.22.42.7-1.7-1.4-1.6
Latency to leave start box in cocaine runway, F0.40.51.0-0.5-0.4-1.0
Latency to leave start box in cocaine runway, M4.44.26.0-2.4-2.1-1.6
Cd content in liver0.10.10.20.40.30.0
Co content in liver0.10.10.20.20.50.2
Cu content in liver0.40.50.7-0.8-0.4-0.9
Fe content in liver0.91.01.41.11.20.7
K content in liver0.90.91.3-1.1-0.8-0.8
Mg content in liver2.93.03.5-1.9-1.5-1.7
Mn content in liver0.60.71.2-1.1-0.9-0.2
Na content in liver1.41.51.9-1.2-1.1-1.4
Rb content in liver1.82.23.0-1.4-1.3-1.7
Se content in liver0.30.40.90.50.30.9
Sr content in liver0.70.60.90.80.90.6
Zn content in liver0.10.10.20.00.40.5