Wdr72

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000054889 0.1 0.05 4.9e-05 0.06 0.06 0.05 0.05 3.5e-04 2.6e-04 1.3e-03 9.9e-04
2 Brain gene expression ENSRNOG00000054889 0.08 0.05 1.5e-04 0.07 0.03 0.04 0.06 2.1e-07 1.7e-03 8.7e-05 1.1e-06
3 NAcc gene expression ENSRNOG00000054889 0.06 0.04 8.7e-04 0.04 0.04 0.01 0.04 3.4e-04 9.4e-04 9.7e-02 4.9e-04
4 PL gene expression ENSRNOG00000054889 0.16 0.07 3.8e-14 0.2 0.17 0.18 0.19 6.0e-15 2.7e-13 7.0e-14 4.0e-14

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail4.715.221.73.72.94.14.7
BMI without tail1.53.16.21.11.81.32.5
Body weight2.29.314.52.52.33.33.8
Epididymis fat weight0.61.52.9-1.70.0-1.5-0.9
Glucose1.21.92.91.41.71.01.2
Heart weight0.30.41.2-0.71.1-0.20.2
Left kidney weight0.82.22.91.41.21.61.7
Right kidney weight0.61.62.70.71.51.11.7
Tail length0.30.82.2-1.5-0.1-1.0-0.3
Length with tail0.00.20.3-0.40.30.30.5
Length without tail1.22.75.61.80.22.41.4
Liver weight, left0.81.32.31.50.31.21.2
Liver weight, right1.93.24.01.71.91.62.0
Parametrial fat weight1.01.92.5-1.61.3-1.4-1.2
Retroperitoneal fat weight0.72.45.3-1.72.3-1.1-0.7
Intraocular pressure0.20.20.5-0.5-0.1-0.7-0.5
Extensor digitorum longus weight5.923.535.04.53.55.25.9
Soleus weight11.232.655.25.61.96.47.4
Tibialis anterior weight11.639.951.67.02.77.27.2
Tibia length0.30.71.51.00.61.20.1
Number of licking bursts4.04.710.8-1.6-3.3-1.6-1.7
Food consumed during 24 hour testing period1.92.33.81.9-1.21.80.7
Times rat made contact with spout0.50.61.0-0.5-0.9-0.6-1.0
Mean time between licks in bursts0.81.22.2-0.8-1.5-0.8-1.1
Mean num. licks in bursts2.63.27.41.52.71.41.1
Std. dev. time between licks in bursts1.11.34.7-0.5-2.2-0.30.4
Water consumed over 24 hours0.60.72.0-0.2-1.4-0.1-0.8
Indifference point 0 sec0.10.20.40.60.10.10.5
Indifference point AUC1.51.82.9-1.7-1.5-1.3-0.3
Indifference point function ln k1.62.34.72.20.71.80.9
Indifference point function log k1.62.34.72.20.71.80.9
Delay discounting total patch changes 0 sec0.20.20.50.70.20.20.6
Delay discounting total patch changes 12 sec0.71.01.8-1.2-0.5-1.4-0.7
Delay discounting total patch changes 18 sec0.30.40.7-0.3-0.9-0.7-0.5
Delay discounting total patch changes 24 sec0.50.61.3-1.0-0.3-1.10.2
Delay discounting total patch changes 6 sec0.30.40.6-0.60.7-0.80.6
Delay discounting time to switch 0 sec0.20.20.7-0.20.2-0.4-0.8
Delay discounting water rate 0 sec1.52.42.81.61.41.71.5
Delay discounting water rate 12 sec1.21.82.61.60.61.41.6
Delay discounting water rate 18 sec0.40.52.00.21.40.20.2
Delay discounting water rate 24 sec0.50.61.0-0.8-0.3-0.9-1.0
Delay discounting water rate 6 sec0.20.30.90.3-0.90.20.5
Locomotor activity2.53.95.42.21.12.12.3
Locomotor testing distance1.01.72.91.70.31.31.5
Locomotor testing rearing0.30.50.70.80.60.50.9
Light reinforcement 10.81.54.50.7-0.70.82.1
Light reinforcement 20.30.40.80.1-0.9-0.3-0.9
Reaction time number correct0.30.51.10.6-0.50.41.1
Reaction time mean minus median0.81.13.9-0.12.0-0.3-0.5
Reaction time mean minus median AUC0.70.91.8-0.51.4-0.7-1.1
Reaction time num false alarms0.20.20.6-0.4-0.1-0.8-0.5
Reaction time num false alarms AUC0.10.10.3-0.0-0.1-0.5-0.3
Reaction time trials correct on left0.30.51.10.6-0.50.41.1
Reaction time trials on left0.30.51.10.5-0.50.41.1
Reaction time mean1.21.63.0-1.01.0-1.1-1.7
Reaction time mean AUC1.01.31.9-0.81.3-0.9-1.4
Median of all reaction times1.41.93.9-1.30.5-1.4-2.0
Reaction time omissions0.20.31.00.11.0-0.20.5
Reaction time false alarm rate0.40.51.0-0.50.2-0.9-1.0
Reaction time premature initiation rate0.10.20.30.50.30.40.5
Reaction time premature initiations0.40.61.10.90.20.61.0
Std. dev. reaction times1.21.73.1-0.91.8-1.0-1.4
Reaction time trials completed0.30.51.10.5-0.50.41.1
Reaction time trials AUC0.30.41.00.5-0.50.41.0
Social response proportion1.31.42.51.61.01.20.8
Social responses0.30.41.7-0.2-1.3-0.20.1
Social time0.50.71.01.00.51.00.8
Conditioned locomotion0.10.20.5-0.7-0.2-0.3-0.1
Cocaine response after cond. corrected5.76.38.93.02.02.82.2
Cocaine response after cond. not corrected4.44.97.32.71.72.71.6
Cocaine response before conditioning1.21.42.5-1.2-1.6-0.7-1.0
Saline control response0.10.20.60.3-0.1-0.2-0.8
Condit. Reinf. active minus inactive responses1.62.02.81.71.31.41.3
Condit. Reinf. active-inactive response ratio2.12.23.61.91.71.31.0
Condit. Reinf. active responses0.30.40.80.5-0.00.60.9
Condit. Reinf. inactive responses2.43.06.2-1.9-2.5-1.2-0.7
Condit. Reinf. lever presses0.60.81.5-0.3-1.2-0.3-1.2
Condit. Reinf. lever reinforcers received0.10.20.30.30.00.50.5
Pavlov. Cond. lever latency0.91.21.81.41.20.81.0
Pavlov. Cond. magazine entry latency4.45.18.0-2.4-1.1-2.3-2.8
Pavlov. Cond. change in total contacts1.41.93.0-1.7-0.8-1.3-1.5
Pavlov. Cond. index score2.43.24.0-2.0-1.5-1.7-1.9
Pavlov. Cond. latency score1.92.43.1-1.6-1.3-1.4-1.7
Pavlov. Cond. lever contacts0.71.01.6-1.1-1.3-0.6-0.8
Pavlov. Cond. magazine entry number3.34.15.72.11.22.12.4
Pavlov. Cond. intertrial magazine entries0.70.91.21.0-0.61.11.0
Pavlov. Cond. lever-magazine prob. diff.2.83.64.6-2.1-1.5-1.8-2.1
Pavlov. Cond. response bias2.02.74.2-2.1-1.4-1.5-1.6
Conditioned reinforcement - actives0.20.20.7-0.3-0.8-0.10.0
Conditioned reinforcement - inactives0.20.30.5-0.4-0.6-0.0-0.7
Conditioned locomotion0.10.10.2-0.40.2-0.2-0.3
Intermittent access intake day 1-15 change1.51.52.4-1.2-1.5-1.3-0.7
Intermittent access intake escalation1.11.13.1-0.7-1.8-0.8-0.2
Intermittent access intake escalation 20.90.93.1-0.1-1.8-0.20.7
Intermitt. access day 1 inactive lever presses0.30.41.4-0.0-0.20.2-1.2
Intermitt. access day 15 inactive lever presses0.60.61.1-1.0-0.1-0.5-1.1
Intermitt. access escalation Index0.80.71.21.1-0.21.00.7
Intermittent access day 1 total infusions1.01.13.60.21.90.3-0.8
Intermittent access day 15 total infusions0.10.10.3-0.30.1-0.4-0.6
Intermittent access terminal intake (last 3 days)0.10.10.20.10.50.1-0.1
Intermittent access total infusions0.20.20.40.40.60.2-0.6
Intermittent access day 1 locomotion0.90.92.80.01.70.3-0.8
Intermittent access day 15 total locomotion0.30.30.7-0.00.80.1-0.6
Intermittent access total locomotion0.70.82.30.61.50.7-0.1
Intermittent access standard deviation0.91.02.5-0.9-1.6-0.6-0.6
Cocaine induced anxiety0.60.71.0-1.0-0.9-0.8-0.5
Post-drug Anxiety2.12.33.7-1.9-1.1-1.9-1.0
Baseline Anxiety0.40.50.8-0.70.4-0.9-0.6
Lifetime Intake0.30.30.70.10.8-0.1-0.8
Incentive Sensitization - Responses1.21.22.00.8-1.01.11.4
Incentive Sensitization - Breakpoint0.90.91.70.5-1.00.91.3
Progressive ratio test 1 active lever presses0.60.61.30.81.20.5-0.1
Progressive ratio test 1 breakpoint0.50.51.50.71.20.4-0.3
Progressive ratio test 1 inactive lever presses0.20.30.90.1-0.20.2-1.0
Progressive ratio test 2 active lever presses0.50.60.90.80.30.81.0
Progressive ratio test 2 breakpoint0.50.50.80.90.30.80.8
Progressive ratio test 2 inactive lever presses0.50.61.6-0.5-0.7-0.3-1.3
Total sessions with >9 infusions0.80.91.61.30.81.10.3
Short access day 1 total inactive lever presses0.40.40.80.80.50.9-0.2
Short access day 10 total inactive lever presses0.60.61.8-0.6-0.4-0.4-1.3
Short access day 1 total infusions0.10.10.30.1-0.00.1-0.6
Short access day 10 total infusions0.50.51.10.41.00.1-0.9
Short access total infusions0.60.61.30.11.1-0.2-1.1
Short access day 1 locomotion0.30.30.40.40.60.50.5
Short access day 10 total locomotion0.50.51.00.80.71.0-0.1
Short access total locomotion0.20.20.60.10.30.2-0.8
Compulsive drug intake0.80.81.51.20.41.2-0.1
One hour access (0.3 mA shock)0.80.92.90.61.70.7-0.0
One hour access (shock baseline)0.00.00.1-0.20.3-0.1-0.1
Number of responses in last shaping day0.40.41.20.0-1.10.5-0.5
Context. condit. distance diff. score0.20.20.5-0.4-0.4-0.4-0.7
Locomotion velocity, session 10.50.51.40.31.20.20.7
Locomotion distance, session 11.11.52.3-1.5-1.1-1.5-0.5
Locomotion velocity, session 20.10.10.3-0.50.0-0.40.4
Locomotion distance, session 20.30.41.0-0.7-0.1-0.41.0
Locomotion velocity, session 30.10.10.3-0.5-0.0-0.40.1
Locomotion distance, session 32.32.54.0-2.0-0.4-1.9-1.4
Stereotopy head waving bouts, day 31.62.03.82.01.01.60.7
Stereotopy head waving duration, day 32.53.05.32.31.51.90.9
Locomotion velocity, session 70.30.40.7-0.70.0-0.9-0.5
Locomotion distance, session 70.81.01.6-1.3-0.5-1.2-0.7
Stereotopy head waving bouts, day 70.50.61.21.1-0.30.60.7
Stereotopy head waving duration, day 70.80.91.51.2-0.70.71.1
Locomotion velocity, session 80.20.20.70.3-0.40.10.8
Locomotion distance, session 80.71.01.5-1.2-1.2-1.1-0.2
Degree of sensitization distance0.30.31.30.0-1.1-0.0-0.1
Degree of sensitization stereotypy0.30.30.50.6-0.40.40.7
Condit. Reinf. active minus inactive responses0.91.02.4-1.5-0.6-1.10.1
Condit. Reinf. active-inactive response ratio0.10.10.20.20.40.3-0.1
Condit. Reinf. active responses1.41.73.1-1.8-1.3-1.30.4
Condit. Reinf. inactive responses2.12.54.3-1.8-2.1-1.50.3
Incentive salience index mean0.91.11.8-1.4-1.3-0.80.3
Condit. Reinf. lever presses0.91.33.4-1.0-1.9-0.60.4
Time in familiar zone, hab. session 10.10.10.2-0.5-0.1-0.1-0.1
Time in novel zone, hab. session 10.10.10.30.10.5-0.2-0.4
Total zone transitions, hab. session 11.72.54.6-2.2-0.5-2.0-0.8
Total locomotion distance, hab. session 10.71.01.9-1.40.3-1.4-0.3
Locomotion velocity, hab. session 10.30.40.8-0.9-0.1-0.80.1
Time in familiar zone, hab. session 20.20.20.4-0.4-0.1-0.3-0.6
Time in novel zone, hab. session 20.50.51.01.00.60.80.4
Total zone transitions, hab. session 21.41.83.8-2.0-0.5-1.80.2
Total locomotion distance, hab. session 21.11.53.4-1.8-0.4-1.50.2
Locomotion velocity, hab. session 21.01.33.1-1.7-0.5-1.40.2
Novel to familiar place preference ratio1.61.72.51.10.81.51.6
Novelty place preference2.02.12.91.30.91.71.7
Time in novel zone, NPP test2.62.73.81.61.22.01.7
Total zone transitions, NPP test0.81.12.3-1.4-0.4-1.5-0.0
Total locomotion distance, NPP test0.91.22.3-1.5-0.4-1.50.2
Locomotion velocity, NPP test1.52.23.9-2.0-1.0-1.9-0.1
Pavlov. Cond. lever latency1.92.45.81.72.41.1-0.2
Pavlov. Cond. magazine entry latency3.85.09.0-3.0-2.4-2.0-1.2
Pavlov. Cond. change in total contacts1.71.84.0-1.5-2.0-0.90.1
Pavlov. Cond. index score3.74.77.8-2.8-2.7-1.9-0.7
Pavlov. Cond. latency score3.54.57.2-2.7-2.6-1.9-0.7
Pavlov. Cond. lever contacts1.61.94.0-1.6-2.0-1.00.0
Pavlov. Cond. magazine entry number3.54.48.32.92.11.91.1
Pavlov. Cond. intertrial magazine entries0.10.10.2-0.10.3-0.40.5
Pavlov. Cond. lever-magazine prob. diff.3.24.06.7-2.6-2.5-1.7-0.5
Pavlov. Cond. response bias2.02.55.1-2.3-1.6-1.4-0.4
Bone: apparent density0.40.61.0-0.8-0.8-1.0-0.6
Bone surface0.20.30.90.2-0.9-0.10.6
Bone volume0.00.10.20.1-0.4-0.10.4
Bone: connectivity density2.13.24.6-1.9-1.7-2.2-1.4
Bone: cortical apparent density0.91.12.7-0.31.6-0.8-1.1
Bone: cortical area0.40.61.01.01.00.7-0.3
Bone: cortical porosity0.70.71.0-1.0-0.8-0.5-1.0
Bone: cortical porosity1.11.11.4-1.2-1.1-0.8-1.2
Bone: cortical thickness0.91.53.3-0.31.4-0.8-1.8
Bone: cortical thickness0.30.31.00.20.6-0.2-1.0
Bone: cortical tissue density0.81.12.4-0.31.6-0.8-1.1
Bone: elastic displacement0.00.00.1-0.10.2-0.10.1
Bone: elastic work0.00.00.10.10.30.0-0.1
Bone: endosteal estimation2.65.78.32.5-0.12.82.9
Bone: endosteal perimeter1.94.05.82.1-0.02.42.4
Bone: final force0.60.91.31.10.61.10.9
Bone: final moment0.50.71.21.10.71.00.6
Bone: marrow area2.85.98.42.6-0.12.92.9
Bone: maximum diameter1.52.74.22.00.62.01.6
Bone: maximum force0.71.21.71.30.51.31.1
Bone: maximum moment0.61.01.51.20.61.20.8
Bone: minimum diameter0.10.20.30.50.20.6-0.1
Bone: periosteal estimation1.73.65.12.30.72.21.9
Bone: periosteal perimeter1.52.63.61.90.81.91.6
Bone: post-yield work0.30.41.00.1-1.00.10.7
Bone: stiffness1.21.82.51.50.81.41.6
Bone: tissue strength0.40.40.8-0.20.8-0.3-0.9
Bone: trabecular number1.52.33.2-1.6-1.8-1.6-1.0
Bone: trabecular spacing0.50.61.9-0.51.4-0.3-0.5
Bone: trabecular thickness0.10.10.30.30.1-0.1-0.5
Bone: trabecular tissue density8.011.213.53.73.43.62.6
Breakpoint value in progressive ratio session0.10.10.10.10.20.30.3
Distance traveled before self-admin1.61.72.21.3-1.41.50.9
Distance traveled after self-admin3.03.35.22.20.62.31.6
Delta time in closed arm before/after self-admin0.20.20.8-0.1-0.90.4-0.0
Delta time in open arm before/after self-admin1.21.12.6-0.30.7-1.1-1.6
Diff in mean of infusions in LGA sessions2.02.24.51.5-0.62.11.3
Extinction: sum of active levers before priming1.01.01.7-0.5-1.3-0.8-1.2
Active lever presses in extinction session 60.10.10.10.30.20.40.4
Delta distance traveled before/after self-admin2.22.33.61.51.91.41.2
Delta ambulatory time before/after self-admin1.51.62.51.41.61.10.7
Time in closed arm before self-admin0.20.20.6-0.3-0.8-0.40.3
Time in closed arm after self-admin0.90.93.2-0.3-1.8-0.10.6
Time in open arm before self-admin2.12.34.01.70.82.01.2
Time in open arm after self-admin1.31.43.21.01.80.9-0.8
Sum of active levers in priming session hrs 5-60.80.81.11.10.80.80.7
Time to tail flick, vehicle, before self-admin0.80.81.5-1.00.4-1.2-0.7
Time to tail flick, vehicle, after self-admin1.71.83.31.8-0.51.51.2
Time to tail flick, test, before self-admin1.51.52.8-1.7-1.0-1.3-0.7
Time to tail flick, test, after self-admin4.44.511.6-1.7-3.4-1.4-1.2
Delta time to tail flick, vehicle, before/after SA1.91.92.71.6-1.11.61.1
Delta time to tail flick, test, before/after SA1.00.93.00.6-1.70.5-0.2
Ambulatory time before self-admin0.60.61.80.3-1.40.70.3
Ambulatory time after self-admin2.52.74.62.20.82.01.3
Total heroin consumption0.60.71.11.00.40.81.0
Area under the delay curve0.80.83.1-0.2-1.8-0.10.3
Delay disc. indifference point, 0s delay1.61.72.8-1.7-1.1-1.6-0.4
Delay disc. indifference point, 16s delay0.40.41.0-0.1-1.0-0.4-0.6
Delay disc. indifference point, 2s delay0.50.51.7-0.5-1.3-0.5-0.2
Delay disc. indifference point, 24s delay0.80.81.0-1.0-1.0-0.9-0.6
Delay disc. indifference point, 4s delay0.20.20.8-0.2-0.9-0.30.1
Delay disc. indifference point, 8s delay1.31.43.90.3-2.00.61.1
Delay discount exponential model param0.80.83.00.21.70.1-0.4
Delay discount hyperbolic model param0.70.72.80.21.70.1-0.3
Fecal boli incidents, locomotor time 10.80.92.8-0.8-1.7-0.1-0.2
Change in fecal boli incidents, locomotor task3.23.05.72.41.61.70.9
Time >=10cm from walls, locomotor time 10.50.51.00.7-1.00.50.6
Bouts of movement, locomotor time 10.40.40.60.20.80.70.7
Total resting periods, locomotor time 10.30.40.80.20.90.70.3
Rest time, locomotor task time 10.50.61.5-0.21.2-0.1-0.9
Distance moved, locomotor task time 10.40.50.9-0.5-0.9-0.90.3
Vertical activity count, locomotor time 10.20.20.4-0.3-0.6-0.40.3
Time >=10cm from walls, locomotor time 20.10.10.2-0.2-0.4-0.3-0.3
Bouts of movement, locomotor time 20.60.61.2-0.21.1-0.60.9
Total resting periods, locomotor time 20.50.51.2-0.11.1-0.50.8
Rest time, locomotor task time 20.30.31.1-0.00.0-0.3-1.0
Distance moved, locomotor task time 20.20.30.4-0.6-0.4-0.60.4
Vertical activity count, locomotor time 21.21.31.7-1.3-1.2-1.2-0.7
Weight adjusted by age3.84.26.02.0-0.92.52.4
Seeking ratio, delayed vs. immediate footshock2.93.36.71.70.11.92.6
Locomotion in novel chamber0.20.30.8-0.20.3-0.6-0.9
Locomotion in novel chamber post-restriction0.40.41.4-0.41.2-0.2-0.3
Progressive ratio0.50.62.1-0.5-1.4-0.00.2
Food seeking constrained by brief footshock0.20.20.60.5-0.1-0.00.8
Seeking ratio, punishment vs. effort1.41.73.01.31.70.71.2
Run reversals in cocaine runway, females0.30.31.00.00.5-0.2-1.0
Run reversals in cocaine runway, males0.10.10.3-0.4-0.2-0.20.5
Latency to leave start box in cocaine runway1.61.83.01.20.81.71.4
Latency to leave start box in cocaine runway, F0.30.40.70.30.20.80.9
Latency to leave start box in cocaine runway, M1.61.52.21.11.31.50.9
Cd content in liver0.91.01.7-1.3-1.2-0.90.1
Co content in liver0.50.61.7-1.3-0.2-0.7-0.5
Cu content in liver0.80.91.50.61.21.10.7
Fe content in liver1.31.52.2-1.3-1.2-1.5-1.0
K content in liver0.40.40.90.51.00.30.6
Mg content in liver2.02.12.61.21.41.61.6
Mn content in liver0.20.20.30.60.00.5-0.5
Na content in liver0.60.61.20.80.40.61.1
Rb content in liver1.72.23.01.31.31.51.7
Se content in liver1.01.22.3-0.9-0.1-1.2-1.5
Sr content in liver1.61.43.5-1.1-1.9-0.9-0.5
Zn content in liver0.10.20.3-0.50.3-0.3-0.5