Zfp704

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000054426 0.08 0.06 6.2e-03 0.01 0.03 0.03 0.03 5.4e-02 7.8e-03 1.0e-02 1.3e-02
2 BLA mRNA stability ENSRNOG00000054426 0.08 0.06 3.4e-03 0 0.03 0 0.01 2.2e-01 1.3e-02 2.0e-01 1.5e-01
3 Brain gene expression ENSRNOG00000054426 0.03 0.03 6.3e-03 0.01 0.01 -0 0.01 2.3e-02 6.6e-02 4.9e-01 5.5e-02
4 Brain mRNA stability ENSRNOG00000054426 0.07 0.04 1.7e-05 0.05 0.04 0.04 0.04 2.6e-05 1.9e-04 1.9e-04 1.1e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail4.314.018.2-3.2-3.2-4.2-4.3
BMI without tail8.517.924.4-3.5-3.6-4.7-4.9
Body weight1.66.68.7-2.2-2.1-3.0-2.9
Epididymis fat weight0.10.30.50.70.60.50.3
Glucose1.52.23.4-1.2-1.3-1.6-1.8
Heart weight1.42.02.81.71.71.11.2
Left kidney weight0.92.74.12.02.00.91.3
Right kidney weight0.82.33.71.91.81.01.1
Tail length0.51.52.4-1.0-1.0-1.2-1.5
Length with tail0.00.10.10.00.20.40.3
Length without tail1.12.33.81.01.21.91.8
Liver weight, left2.43.84.1-1.9-1.9-2.0-2.0
Liver weight, right0.00.00.1-0.2-0.30.1-0.2
Parametrial fat weight0.10.20.2-0.3-0.4-0.4-0.5
Retroperitoneal fat weight0.00.10.20.40.40.30.4
Intraocular pressure2.43.44.6-1.8-1.7-2.1-1.7
Extensor digitorum longus weight11.044.354.2-5.9-6.1-7.4-7.1
Soleus weight1.23.44.7-1.5-1.5-2.2-2.1
Tibialis anterior weight11.038.044.8-5.7-5.7-6.7-6.5
Tibia length0.92.43.71.91.91.30.8
Number of licking bursts0.10.10.30.50.6-0.2-0.0
Food consumed during 24 hour testing period1.82.22.8-1.3-1.3-1.7-1.6
Times rat made contact with spout0.10.10.30.20.2-0.3-0.5
Mean time between licks in bursts0.81.12.3-1.5-1.40.4-0.1
Mean num. licks in bursts0.10.10.1-0.3-0.4-0.1-0.3
Std. dev. time between licks in bursts0.10.10.2-0.4-0.30.20.2
Water consumed over 24 hours0.60.71.6-0.4-0.5-1.0-1.3
Indifference point 0 sec1.01.71.91.41.31.31.2
Indifference point AUC0.20.20.3-0.4-0.60.30.6
Indifference point function ln k0.50.71.80.30.2-1.0-1.4
Indifference point function log k0.50.71.80.30.2-1.0-1.4
Delay discounting total patch changes 0 sec0.71.21.51.21.11.10.8
Delay discounting total patch changes 12 sec1.31.82.91.11.01.41.7
Delay discounting total patch changes 18 sec0.10.20.4-0.4-0.6-0.2-0.0
Delay discounting total patch changes 24 sec0.40.50.70.70.60.60.8
Delay discounting total patch changes 6 sec0.10.10.30.30.10.50.4
Delay discounting time to switch 0 sec2.03.04.4-2.1-1.9-1.5-1.3
Delay discounting water rate 0 sec0.20.40.80.90.70.30.3
Delay discounting water rate 12 sec0.81.21.91.41.30.80.7
Delay discounting water rate 18 sec0.20.20.40.60.60.20.3
Delay discounting water rate 24 sec0.10.20.40.70.5-0.1-0.1
Delay discounting water rate 6 sec1.21.73.01.71.70.80.7
Locomotor activity0.50.81.80.10.0-1.2-1.3
Locomotor testing distance0.20.30.80.10.0-0.6-0.9
Locomotor testing rearing0.91.41.81.31.31.01.1
Light reinforcement 10.30.51.1-0.8-1.1-0.0-0.6
Light reinforcement 22.93.84.8-1.7-1.9-1.9-2.2
Reaction time number correct0.00.00.1-0.20.00.30.0
Reaction time mean minus median0.50.61.3-0.8-1.1-0.6-0.2
Reaction time mean minus median AUC1.11.42.5-1.3-1.6-0.9-0.7
Reaction time num false alarms0.10.10.3-0.00.30.60.4
Reaction time num false alarms AUC0.20.30.50.10.40.70.5
Reaction time trials correct on left0.00.00.1-0.20.00.30.0
Reaction time trials on left0.00.00.1-0.2-0.10.30.0
Reaction time mean1.21.72.3-1.4-1.5-1.4-0.7
Reaction time mean AUC1.52.02.7-1.6-1.6-1.4-0.8
Median of all reaction times1.72.22.7-1.6-1.6-1.6-1.0
Reaction time omissions1.72.34.7-1.9-2.2-0.5-0.7
Reaction time false alarm rate0.10.10.10.20.40.30.2
Reaction time premature initiation rate2.02.73.01.71.71.51.6
Reaction time premature initiations1.62.32.41.51.51.51.5
Std. dev. reaction times0.30.50.8-0.7-0.9-0.8-0.1
Reaction time trials completed0.00.00.1-0.2-0.10.30.0
Reaction time trials AUC0.10.10.1-0.4-0.20.30.0
Social response proportion0.00.00.00.0-0.0-0.1-0.1
Social responses0.20.30.7-0.2-0.4-0.5-0.9
Social time0.60.82.0-0.1-0.01.41.0
Conditioned locomotion0.20.20.4-0.6-0.70.3-0.2
Cocaine response after cond. corrected1.71.92.61.11.21.61.6
Cocaine response after cond. not corrected2.93.25.01.41.42.22.0
Cocaine response before conditioning0.20.20.70.10.20.80.3
Saline control response0.00.10.20.00.20.40.0
Condit. Reinf. active minus inactive responses0.30.30.60.10.50.80.7
Condit. Reinf. active-inactive response ratio0.00.00.1-0.20.1-0.1-0.1
Condit. Reinf. active responses0.91.32.60.30.81.61.4
Condit. Reinf. inactive responses0.50.61.60.00.21.30.8
Condit. Reinf. lever presses0.30.40.70.20.50.80.8
Condit. Reinf. lever reinforcers received1.01.42.60.50.91.61.4
Pavlov. Cond. lever latency0.91.31.7-0.9-1.1-1.2-1.3
Pavlov. Cond. magazine entry latency0.10.10.2-0.2-0.2-0.4-0.2
Pavlov. Cond. change in total contacts0.10.20.5-0.7-0.40.00.3
Pavlov. Cond. index score0.00.00.1-0.3-0.10.00.2
Pavlov. Cond. latency score0.00.00.1-0.00.10.20.3
Pavlov. Cond. lever contacts0.60.81.30.60.71.01.1
Pavlov. Cond. magazine entry number0.20.30.60.50.40.70.5
Pavlov. Cond. intertrial magazine entries0.20.30.4-0.6-0.6-0.3-0.6
Pavlov. Cond. lever-magazine prob. diff.0.00.00.1-0.10.10.20.4
Pavlov. Cond. response bias0.10.10.3-0.10.10.30.5
Conditioned reinforcement - actives2.82.84.21.31.61.72.0
Conditioned reinforcement - inactives0.60.71.90.10.11.40.8
Conditioned locomotion0.70.91.71.11.30.60.5
Intermittent access intake day 1-15 change4.54.55.72.42.41.62.0
Intermittent access intake escalation3.33.34.22.02.01.31.8
Intermittent access intake escalation 25.05.05.62.22.22.12.4
Intermitt. access day 1 inactive lever presses0.30.41.1-0.2-0.5-0.2-1.1
Intermitt. access day 15 inactive lever presses1.71.84.00.80.62.01.5
Intermitt. access escalation Index0.00.00.10.20.1-0.3-0.1
Intermittent access day 1 total infusions2.32.65.10.70.92.31.9
Intermittent access day 15 total infusions6.47.19.02.32.43.02.9
Intermittent access terminal intake (last 3 days)6.77.39.62.22.33.13.1
Intermittent access total infusions4.75.27.61.71.92.72.6
Intermittent access day 1 locomotion0.50.51.00.30.41.00.9
Intermittent access day 15 total locomotion0.40.40.70.30.40.80.8
Intermittent access total locomotion1.11.32.30.70.71.51.3
Intermittent access standard deviation5.25.57.22.72.61.92.2
Cocaine induced anxiety0.00.00.1-0.0-0.20.2-0.3
Post-drug Anxiety1.41.62.6-1.1-1.3-0.8-1.6
Baseline Anxiety0.10.10.2-0.5-0.4-0.1-0.4
Lifetime Intake5.25.88.71.81.92.92.7
Incentive Sensitization - Responses1.01.02.10.40.71.21.4
Incentive Sensitization - Breakpoint1.11.12.10.50.81.21.4
Progressive ratio test 1 active lever presses4.64.75.82.12.02.42.2
Progressive ratio test 1 breakpoint4.04.15.31.91.82.32.1
Progressive ratio test 1 inactive lever presses0.30.30.70.50.40.80.4
Progressive ratio test 2 active lever presses2.93.14.11.51.61.92.0
Progressive ratio test 2 breakpoint2.42.73.41.31.51.81.8
Progressive ratio test 2 inactive lever presses1.61.82.41.21.31.61.4
Total sessions with >9 infusions2.62.94.51.21.12.12.1
Short access day 1 total inactive lever presses1.41.63.40.80.71.81.3
Short access day 10 total inactive lever presses0.20.20.30.50.3-0.2-0.5
Short access day 1 total infusions3.03.23.81.71.62.01.9
Short access day 10 total infusions4.44.97.51.81.82.72.4
Short access total infusions4.65.18.51.71.72.92.5
Short access day 1 locomotion0.20.20.40.60.50.40.3
Short access day 10 total locomotion0.30.40.8-0.7-0.9-0.2-0.5
Short access total locomotion0.40.40.70.60.50.80.5
Compulsive drug intake2.02.04.2-0.9-0.9-2.1-1.5
One hour access (0.3 mA shock)3.84.55.11.92.22.12.3
One hour access (shock baseline)7.48.510.72.52.73.13.3
Number of responses in last shaping day0.00.00.10.20.10.1-0.3
Context. condit. distance diff. score0.10.10.20.40.4-0.4-0.0
Locomotion velocity, session 11.11.21.9-1.3-1.4-0.8-0.7
Locomotion distance, session 10.71.01.6-1.3-1.1-0.8-0.5
Locomotion velocity, session 22.02.42.5-1.5-1.6-1.6-1.5
Locomotion distance, session 21.42.03.5-1.9-1.8-0.9-0.7
Locomotion velocity, session 30.10.10.20.40.3-0.0-0.2
Locomotion distance, session 30.00.00.00.00.10.2-0.0
Stereotopy head waving bouts, day 30.10.10.3-0.5-0.40.40.2
Stereotopy head waving duration, day 30.20.30.3-0.5-0.5-0.6-0.6
Locomotion velocity, session 72.83.15.80.51.02.42.3
Locomotion distance, session 73.54.56.81.51.82.32.6
Stereotopy head waving bouts, day 70.91.11.4-0.9-0.9-1.1-1.2
Stereotopy head waving duration, day 71.21.52.1-0.9-1.0-1.4-1.5
Locomotion velocity, session 82.83.43.7-1.7-1.9-1.9-1.9
Locomotion distance, session 80.71.11.2-1.1-1.1-1.1-0.8
Degree of sensitization distance0.80.92.00.50.60.91.4
Degree of sensitization stereotypy2.22.43.4-1.2-1.3-1.8-1.8
Condit. Reinf. active minus inactive responses6.87.611.0-3.3-3.2-1.8-2.4
Condit. Reinf. active-inactive response ratio8.89.413.8-3.7-3.6-2.0-2.6
Condit. Reinf. active responses5.56.710.0-3.2-3.0-1.8-2.2
Condit. Reinf. inactive responses0.20.20.5-0.3-0.2-0.7-0.5
Incentive salience index mean6.78.012.0-3.5-3.3-1.8-2.4
Condit. Reinf. lever presses2.63.55.1-2.3-2.1-1.5-1.5
Time in familiar zone, hab. session 10.90.81.81.31.2-0.10.1
Time in novel zone, hab. session 10.30.30.7-0.4-0.30.80.5
Total zone transitions, hab. session 10.71.01.7-1.3-1.3-0.6-0.5
Total locomotion distance, hab. session 10.40.61.4-1.2-1.0-0.2-0.0
Locomotion velocity, hab. session 10.91.22.4-1.6-1.4-0.7-0.4
Time in familiar zone, hab. session 22.93.04.82.22.01.31.3
Time in novel zone, hab. session 21.41.42.2-1.5-1.3-0.9-1.0
Total zone transitions, hab. session 20.00.00.1-0.1-0.1-0.20.3
Total locomotion distance, hab. session 20.20.20.4-0.6-0.6-0.40.0
Locomotion velocity, hab. session 20.10.10.2-0.5-0.4-0.20.1
Novel to familiar place preference ratio0.30.30.8-0.4-0.3-0.9-0.5
Novelty place preference0.20.20.7-0.1-0.1-0.8-0.4
Time in novel zone, NPP test0.30.31.0-0.0-0.0-1.0-0.6
Total zone transitions, NPP test0.20.30.5-0.7-0.7-0.4-0.2
Total locomotion distance, NPP test0.30.40.8-0.9-0.8-0.5-0.2
Locomotion velocity, NPP test0.20.20.6-0.8-0.6-0.00.3
Pavlov. Cond. lever latency0.81.01.51.21.20.60.8
Pavlov. Cond. magazine entry latency0.60.80.9-1.0-0.9-0.9-0.9
Pavlov. Cond. change in total contacts3.53.74.0-2.0-1.9-1.8-1.9
Pavlov. Cond. index score1.01.31.5-1.2-1.2-1.0-1.1
Pavlov. Cond. latency score0.81.11.3-1.1-1.1-0.9-1.0
Pavlov. Cond. lever contacts1.11.32.2-1.5-1.4-0.7-0.8
Pavlov. Cond. magazine entry number1.31.62.11.11.11.51.4
Pavlov. Cond. intertrial magazine entries1.41.63.90.50.62.01.4
Pavlov. Cond. lever-magazine prob. diff.1.01.31.4-1.2-1.1-1.1-1.1
Pavlov. Cond. response bias1.51.92.1-1.3-1.3-1.4-1.4
Bone: apparent density0.61.01.30.81.01.21.0
Bone surface0.30.60.90.50.90.70.8
Bone volume0.40.61.00.40.81.00.9
Bone: connectivity density1.01.52.01.01.21.21.4
Bone: cortical apparent density0.40.50.6-0.6-0.7-0.8-0.7
Bone: cortical area0.81.22.3-0.7-0.6-1.4-1.5
Bone: cortical porosity0.10.10.1-0.4-0.3-0.3-0.1
Bone: cortical porosity0.10.10.2-0.4-0.4-0.1-0.1
Bone: cortical thickness0.91.42.1-1.0-0.9-1.3-1.4
Bone: cortical thickness4.04.86.1-1.8-1.9-2.4-2.5
Bone: cortical tissue density0.30.40.5-0.6-0.7-0.7-0.6
Bone: elastic displacement0.20.20.5-0.7-0.50.00.3
Bone: elastic work0.10.10.3-0.6-0.4-0.2-0.1
Bone: endosteal estimation0.30.61.0-0.6-0.2-1.0-1.0
Bone: endosteal perimeter0.00.10.20.30.40.10.1
Bone: final force1.11.83.1-1.0-0.9-1.5-1.8
Bone: final moment0.71.22.4-0.6-0.5-1.4-1.6
Bone: marrow area0.40.81.4-0.7-0.3-1.1-1.2
Bone: maximum diameter0.40.71.60.00.1-1.3-1.1
Bone: maximum force0.71.32.3-0.8-0.6-1.3-1.5
Bone: maximum moment0.50.81.7-0.4-0.2-1.1-1.3
Bone: minimum diameter1.93.54.9-2.2-1.8-1.7-1.8
Bone: periosteal estimation1.12.33.8-1.2-0.9-1.8-1.9
Bone: periosteal perimeter0.20.30.7-0.00.2-0.7-0.8
Bone: post-yield work1.92.64.22.02.11.21.0
Bone: stiffness0.20.40.9-0.4-0.3-0.6-0.9
Bone: tissue strength2.01.92.61.61.61.21.1
Bone: trabecular number0.40.60.80.70.80.90.6
Bone: trabecular spacing0.50.71.3-1.0-1.1-0.6-0.3
Bone: trabecular thickness0.70.91.00.81.01.00.9
Bone: trabecular tissue density0.60.81.6-1.0-1.2-0.5-0.6
Breakpoint value in progressive ratio session1.01.11.7-1.3-1.3-0.7-0.7
Distance traveled before self-admin0.80.92.10.60.6-1.5-0.8
Distance traveled after self-admin0.40.50.90.70.6-1.0-0.2
Delta time in closed arm before/after self-admin0.70.71.40.70.7-1.2-0.6
Delta time in open arm before/after self-admin0.10.10.50.00.00.70.2
Diff in mean of infusions in LGA sessions2.62.93.4-1.9-1.8-1.6-1.6
Extinction: sum of active levers before priming0.40.40.7-0.8-0.9-0.3-0.3
Active lever presses in extinction session 60.30.30.50.50.60.20.7
Delta distance traveled before/after self-admin0.30.30.50.50.50.50.7
Delta ambulatory time before/after self-admin1.21.32.20.90.91.11.5
Time in closed arm before self-admin1.11.32.70.70.61.61.2
Time in closed arm after self-admin0.50.51.21.10.9-0.3-0.2
Time in open arm before self-admin0.40.41.0-0.6-0.3-1.0-0.5
Time in open arm after self-admin1.11.21.5-1.2-1.2-0.7-1.2
Sum of active levers in priming session hrs 5-60.10.10.3-0.10.00.50.5
Time to tail flick, vehicle, before self-admin0.70.70.90.60.80.90.9
Time to tail flick, vehicle, after self-admin1.31.41.81.21.31.01.2
Time to tail flick, test, before self-admin0.20.10.30.60.30.40.2
Time to tail flick, test, after self-admin1.11.22.10.90.81.51.1
Delta time to tail flick, vehicle, before/after SA0.90.91.40.80.80.91.2
Delta time to tail flick, test, before/after SA0.10.10.10.30.20.30.0
Ambulatory time before self-admin0.50.51.10.40.4-1.1-0.8
Ambulatory time after self-admin0.30.30.60.80.7-0.30.3
Total heroin consumption0.10.20.4-0.6-0.5-0.0-0.1
Area under the delay curve0.60.60.8-0.6-0.7-0.9-0.9
Delay disc. indifference point, 0s delay0.10.10.20.40.4-0.10.2
Delay disc. indifference point, 16s delay0.90.91.7-0.7-0.9-0.8-1.3
Delay disc. indifference point, 2s delay1.01.11.6-1.2-1.1-0.9-0.8
Delay disc. indifference point, 24s delay0.00.00.00.10.0-0.0-0.1
Delay disc. indifference point, 4s delay1.81.93.6-0.9-1.0-1.9-1.5
Delay disc. indifference point, 8s delay0.10.10.20.40.20.20.2
Delay discount exponential model param0.30.40.40.50.60.70.7
Delay discount hyperbolic model param0.60.60.80.70.70.90.8
Fecal boli incidents, locomotor time 10.20.20.2-0.5-0.50.50.2
Change in fecal boli incidents, locomotor task1.61.62.71.51.60.51.0
Time >=10cm from walls, locomotor time 10.50.50.80.60.80.10.9
Bouts of movement, locomotor time 10.80.92.01.41.10.40.4
Total resting periods, locomotor time 10.80.91.61.31.00.60.7
Rest time, locomotor task time 10.70.81.51.21.10.40.7
Distance moved, locomotor task time 10.20.30.8-0.2-0.2-0.9-0.4
Vertical activity count, locomotor time 11.01.02.1-0.8-0.6-1.4-1.1
Time >=10cm from walls, locomotor time 20.10.10.3-0.10.2-0.50.3
Bouts of movement, locomotor time 20.20.20.60.80.5-0.3-0.1
Total resting periods, locomotor time 20.30.30.70.80.6-0.3-0.2
Rest time, locomotor task time 20.10.10.20.30.1-0.4-0.4
Distance moved, locomotor task time 20.10.10.30.10.1-0.60.3
Vertical activity count, locomotor time 22.32.54.0-1.4-1.3-2.0-1.5
Weight adjusted by age0.20.20.3-0.5-0.60.50.1
Seeking ratio, delayed vs. immediate footshock8.29.311.03.13.32.63.1
Locomotion in novel chamber1.51.82.4-1.2-1.3-1.5-1.3
Locomotion in novel chamber post-restriction0.20.20.50.40.4-0.20.7
Progressive ratio1.01.22.61.61.4-0.00.2
Food seeking constrained by brief footshock4.45.36.1-2.5-2.4-2.1-2.2
Seeking ratio, punishment vs. effort3.54.37.8-2.8-2.7-0.8-1.3
Run reversals in cocaine runway, females1.41.43.5-0.7-0.7-1.9-1.1
Run reversals in cocaine runway, males3.53.33.8-1.9-1.9-1.9-1.5
Latency to leave start box in cocaine runway0.70.81.20.80.90.61.1
Latency to leave start box in cocaine runway, F2.93.23.71.71.81.61.9
Latency to leave start box in cocaine runway, M1.21.21.8-1.3-1.4-0.8-0.7
Cd content in liver0.20.20.3-0.2-0.5-0.6-0.6
Co content in liver0.20.20.30.60.4-0.3-0.5
Cu content in liver3.74.54.62.12.12.12.2
Fe content in liver0.10.10.3-0.6-0.3-0.00.1
K content in liver1.31.32.10.90.91.41.3
Mg content in liver0.70.71.40.40.51.21.1
Mn content in liver0.10.10.3-0.3-0.30.50.2
Na content in liver0.40.40.90.90.90.0-0.0
Rb content in liver0.00.00.00.1-0.00.10.1
Se content in liver0.30.40.60.60.60.80.6
Sr content in liver0.10.10.1-0.4-0.3-0.2-0.0
Zn content in liver2.22.53.11.51.51.61.7