Sim2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000054203 0.05 0.03 6.8e-03 0.04 0.03 0.02 0.03 3.7e-03 1.7e-02 2.4e-02 7.3e-03
2 Brain gene expression ENSRNOG00000054203 0.06 0.04 4.3e-05 0.05 0.05 0.04 0.04 1.6e-05 1.2e-05 1.4e-04 4.9e-05
3 Brain mRNA stability ENSRNOG00000054203 0.06 0.04 9.6e-06 0.06 0.05 0.06 0.05 2.6e-06 9.9e-06 1.9e-06 1.0e-05
4 PL gene expression ENSRNOG00000054203 0.06 0.04 1.5e-03 0.03 0.02 0.03 0.02 1.4e-03 1.5e-02 5.0e-03 9.1e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.61.82.5-1.1-1.4-1.2-1.6
BMI without tail0.10.20.4-0.1-0.6-0.1-0.5
Body weight0.20.81.1-0.8-0.9-0.7-1.1
Epididymis fat weight2.04.812.1-3.5-1.2-1.3-1.9
Glucose1.62.57.6-2.71.10.90.5
Heart weight1.92.74.5-1.1-2.1-0.8-2.1
Left kidney weight1.44.15.32.3-1.9-2.3-1.5
Right kidney weight1.23.35.72.4-1.2-2.4-0.8
Tail length0.51.42.31.51.10.41.3
Length with tail0.10.20.60.80.30.00.4
Length without tail0.00.00.10.0-0.0-0.2-0.1
Liver weight, left0.20.30.90.90.1-0.50.2
Liver weight, right0.20.30.50.2-0.5-0.7-0.4
Parametrial fat weight1.73.44.1-1.8-1.7-1.7-2.0
Retroperitoneal fat weight0.72.37.4-2.7-0.7-0.2-1.2
Intraocular pressure0.50.71.3-0.2-0.81.2-0.8
Extensor digitorum longus weight1.45.720.2-4.5-0.50.6-1.4
Soleus weight0.30.82.7-1.7-0.1-0.4-0.5
Tibialis anterior weight2.68.931.0-5.6-0.80.9-1.8
Tibia length0.00.00.10.1-0.30.1-0.3
Number of licking bursts0.50.61.00.8-1.0-0.4-0.7
Food consumed during 24 hour testing period0.50.61.00.90.80.31.0
Times rat made contact with spout3.54.011.03.31.2-0.41.9
Mean time between licks in bursts0.60.82.61.6-0.10.80.3
Mean num. licks in bursts1.82.24.10.91.90.42.0
Std. dev. time between licks in bursts1.21.42.40.81.40.81.6
Water consumed over 24 hours0.40.50.70.80.5-0.80.6
Indifference point 0 sec2.64.16.61.92.31.02.6
Indifference point AUC1.01.21.9-1.21.40.61.0
Indifference point function ln k0.40.62.31.5-0.1-0.30.1
Indifference point function log k0.40.62.31.5-0.1-0.30.1
Delay discounting total patch changes 0 sec2.23.66.01.52.30.92.4
Delay discounting total patch changes 12 sec1.72.23.9-0.72.01.21.7
Delay discounting total patch changes 18 sec1.72.23.8-0.41.91.41.7
Delay discounting total patch changes 24 sec0.30.40.8-0.40.9-0.50.7
Delay discounting total patch changes 6 sec3.65.58.2-0.32.92.52.7
Delay discounting time to switch 0 sec0.60.91.7-0.3-1.3-0.4-1.2
Delay discounting water rate 0 sec1.21.92.5-1.11.61.61.3
Delay discounting water rate 12 sec1.11.73.01.71.10.71.4
Delay discounting water rate 18 sec0.30.40.5-0.7-0.6-0.0-0.7
Delay discounting water rate 24 sec0.20.30.70.8-0.1-0.7-0.2
Delay discounting water rate 6 sec0.10.10.20.40.3-0.00.3
Locomotor activity1.52.45.92.4-0.2-1.90.4
Locomotor testing distance0.81.32.81.70.8-0.61.2
Locomotor testing rearing0.71.12.71.1-0.4-1.6-0.2
Light reinforcement 10.61.11.8-0.1-1.1-1.3-1.1
Light reinforcement 21.41.85.0-2.2-0.6-0.8-1.2
Reaction time number correct0.20.20.50.00.70.50.5
Reaction time mean minus median0.60.81.10.91.0-0.51.0
Reaction time mean minus median AUC0.91.12.50.31.6-0.01.4
Reaction time num false alarms0.81.14.22.0-0.10.10.5
Reaction time num false alarms AUC1.01.34.72.2-0.5-0.50.1
Reaction time trials correct on left0.20.20.50.00.70.50.5
Reaction time trials on left0.20.30.5-0.00.70.50.5
Reaction time mean0.10.10.2-0.4-0.3-0.3-0.3
Reaction time mean AUC0.00.00.1-0.30.20.10.2
Median of all reaction times0.60.81.1-0.9-1.0-0.4-1.0
Reaction time omissions0.30.41.5-0.3-0.2-1.2-0.2
Reaction time false alarm rate0.91.34.02.0-0.8-0.7-0.1
Reaction time premature initiation rate0.70.91.2-0.9-0.9-1.1-1.0
Reaction time premature initiations0.20.30.7-0.8-0.1-0.5-0.3
Std. dev. reaction times0.30.50.60.80.7-0.30.8
Reaction time trials completed0.20.30.5-0.00.70.50.5
Reaction time trials AUC0.20.30.4-0.30.70.60.4
Social response proportion0.90.92.21.5-0.3-1.2-0.1
Social responses0.91.22.31.4-0.6-1.5-0.4
Social time0.00.00.2-0.1-0.0-0.4-0.1
Conditioned locomotion0.30.41.11.00.3-0.10.5
Cocaine response after cond. corrected0.80.91.70.41.3-0.11.3
Cocaine response after cond. not corrected0.80.91.70.61.2-0.31.3
Cocaine response before conditioning0.10.20.40.2-0.3-0.6-0.3
Saline control response0.30.40.7-0.80.8-0.10.6
Condit. Reinf. active minus inactive responses0.20.30.8-0.4-0.0-0.9-0.2
Condit. Reinf. active-inactive response ratio1.11.21.80.0-1.2-1.3-1.3
Condit. Reinf. active responses0.60.81.4-1.01.20.30.9
Condit. Reinf. inactive responses1.82.33.8-1.11.91.21.7
Condit. Reinf. lever presses0.20.30.4-0.70.60.60.4
Condit. Reinf. lever reinforcers received0.50.71.2-1.11.00.30.7
Pavlov. Cond. lever latency0.40.51.51.2-0.7-0.2-0.3
Pavlov. Cond. magazine entry latency0.20.20.40.30.60.00.6
Pavlov. Cond. change in total contacts0.20.20.7-0.8-0.2-0.3-0.4
Pavlov. Cond. index score0.50.61.3-0.21.10.60.9
Pavlov. Cond. latency score0.20.30.60.10.80.30.7
Pavlov. Cond. lever contacts0.10.20.6-0.80.30.00.0
Pavlov. Cond. magazine entry number0.00.00.10.20.20.00.3
Pavlov. Cond. intertrial magazine entries0.30.30.5-0.60.70.40.6
Pavlov. Cond. lever-magazine prob. diff.0.40.51.1-0.11.00.50.9
Pavlov. Cond. response bias0.10.20.4-0.70.40.10.2
Conditioned reinforcement - actives0.30.30.70.8-0.5-0.0-0.5
Conditioned reinforcement - inactives1.61.83.31.81.20.71.4
Conditioned locomotion0.20.20.60.80.20.40.3
Intermittent access intake day 1-15 change1.21.21.61.21.20.51.3
Intermittent access intake escalation1.31.32.01.11.30.61.4
Intermittent access intake escalation 22.82.84.20.82.11.61.9
Intermitt. access day 1 inactive lever presses1.41.53.51.91.00.11.3
Intermitt. access day 15 inactive lever presses1.01.11.61.01.20.41.3
Intermitt. access escalation Index0.20.10.50.70.2-0.10.2
Intermittent access day 1 total infusions0.40.41.21.10.30.30.4
Intermittent access day 15 total infusions3.53.95.12.02.11.62.3
Intermittent access terminal intake (last 3 days)2.52.74.02.01.61.11.8
Intermittent access total infusions1.92.13.01.71.41.11.5
Intermittent access day 1 locomotion1.01.03.71.90.1-0.60.4
Intermittent access day 15 total locomotion2.02.13.51.11.80.61.9
Intermittent access total locomotion2.83.14.32.11.90.52.1
Intermittent access standard deviation1.92.02.90.61.71.41.7
Cocaine induced anxiety0.40.50.90.20.90.60.9
Post-drug Anxiety0.91.01.7-0.61.30.71.2
Baseline Anxiety0.00.00.0-0.20.20.2-0.0
Lifetime Intake0.70.81.31.20.51.00.7
Incentive Sensitization - Responses2.62.63.70.11.91.91.7
Incentive Sensitization - Breakpoint2.92.94.20.22.01.91.9
Progressive ratio test 1 active lever presses0.50.51.31.2-0.6-0.4-0.4
Progressive ratio test 1 breakpoint0.70.71.71.3-0.8-0.6-0.6
Progressive ratio test 1 inactive lever presses0.70.71.71.30.60.50.7
Progressive ratio test 2 active lever presses2.02.12.41.31.41.51.5
Progressive ratio test 2 breakpoint2.12.42.81.21.61.61.7
Progressive ratio test 2 inactive lever presses3.64.26.01.92.41.32.4
Total sessions with >9 infusions0.70.71.00.9-1.0-0.6-0.8
Short access day 1 total inactive lever presses1.21.42.01.41.10.61.4
Short access day 10 total inactive lever presses0.80.91.7-0.70.91.30.8
Short access day 1 total infusions0.20.20.30.3-0.50.5-0.4
Short access day 10 total infusions0.50.51.10.3-1.10.2-0.9
Short access total infusions0.50.61.30.3-1.1-0.0-1.0
Short access day 1 locomotion0.50.51.01.0-0.8-0.2-0.5
Short access day 10 total locomotion0.40.40.80.5-0.5-0.9-0.5
Short access total locomotion0.90.91.20.5-1.1-1.1-1.0
Compulsive drug intake1.01.02.3-1.0-0.4-1.5-0.7
One hour access (0.3 mA shock)1.21.41.61.11.31.21.2
One hour access (shock baseline)3.33.95.01.42.02.22.1
Number of responses in last shaping day1.21.21.61.0-1.3-1.2-1.0
Context. condit. distance diff. score0.40.51.50.30.4-1.20.4
Locomotion velocity, session 10.20.20.3-0.20.50.50.5
Locomotion distance, session 10.30.40.7-0.80.8-0.30.6
Locomotion velocity, session 20.30.40.7-0.30.80.20.8
Locomotion distance, session 20.20.31.00.1-0.4-1.0-0.3
Locomotion velocity, session 32.73.15.7-2.41.91.31.3
Locomotion distance, session 30.40.51.5-1.2-0.30.3-0.5
Stereotopy head waving bouts, day 32.32.85.9-1.01.52.41.4
Stereotopy head waving duration, day 31.82.24.7-0.91.32.21.2
Locomotion velocity, session 70.50.51.61.20.2-0.40.5
Locomotion distance, session 70.81.12.01.4-0.8-1.2-0.4
Stereotopy head waving bouts, day 72.93.24.9-1.32.21.71.8
Stereotopy head waving duration, day 72.42.95.1-1.32.31.21.8
Locomotion velocity, session 81.61.93.5-1.91.60.71.1
Locomotion distance, session 80.40.62.40.20.1-1.50.1
Degree of sensitization distance0.90.92.91.7-0.0-0.80.3
Degree of sensitization stereotypy1.31.42.3-1.51.50.51.0
Condit. Reinf. active minus inactive responses0.10.10.30.10.1-0.50.1
Condit. Reinf. active-inactive response ratio0.30.30.60.50.7-0.10.7
Condit. Reinf. active responses0.20.20.9-0.1-0.0-0.9-0.1
Condit. Reinf. inactive responses0.10.10.2-0.40.1-0.30.1
Incentive salience index mean0.20.20.70.4-0.1-0.80.0
Condit. Reinf. lever presses0.30.40.90.80.1-0.90.3
Time in familiar zone, hab. session 10.20.10.50.1-0.2-0.7-0.3
Time in novel zone, hab. session 10.60.60.8-0.9-0.60.9-0.7
Total zone transitions, hab. session 10.50.72.11.50.1-0.80.4
Total locomotion distance, hab. session 10.50.72.51.6-0.1-0.50.2
Locomotion velocity, hab. session 10.50.82.71.6-0.1-0.50.3
Time in familiar zone, hab. session 20.80.91.3-0.7-1.0-1.0-1.1
Time in novel zone, hab. session 20.30.30.50.50.30.70.5
Total zone transitions, hab. session 20.91.23.40.9-0.7-1.8-0.5
Total locomotion distance, hab. session 21.41.92.91.7-1.2-1.6-0.8
Locomotion velocity, hab. session 21.31.72.71.7-1.1-1.6-0.7
Novel to familiar place preference ratio0.10.20.3-0.1-0.6-0.0-0.5
Novelty place preference0.40.50.8-0.4-0.9-0.1-0.9
Time in novel zone, NPP test0.60.61.0-0.6-1.0-0.3-1.0
Total zone transitions, NPP test0.20.20.70.20.3-0.80.3
Total locomotion distance, NPP test0.20.30.40.5-0.6-0.7-0.4
Locomotion velocity, NPP test0.20.30.60.8-0.5-0.6-0.3
Pavlov. Cond. lever latency0.10.10.30.1-0.60.0-0.5
Pavlov. Cond. magazine entry latency0.20.20.70.9-0.4-0.3-0.2
Pavlov. Cond. change in total contacts0.20.20.60.4-0.1-0.7-0.1
Pavlov. Cond. index score0.10.10.10.40.2-0.20.2
Pavlov. Cond. latency score0.10.10.20.50.0-0.30.1
Pavlov. Cond. lever contacts0.40.50.90.31.0-0.21.0
Pavlov. Cond. magazine entry number0.00.00.1-0.30.30.10.2
Pavlov. Cond. intertrial magazine entries3.13.85.3-2.32.01.81.6
Pavlov. Cond. lever-magazine prob. diff.0.00.10.10.30.1-0.30.2
Pavlov. Cond. response bias0.20.20.40.60.3-0.40.4
Bone: apparent density0.20.40.70.1-0.8-0.5-0.8
Bone surface1.22.16.7-2.6-0.6-0.2-1.2
Bone volume0.81.33.1-1.8-0.8-0.3-1.2
Bone: connectivity density0.50.80.9-0.9-0.8-0.9-0.9
Bone: cortical apparent density0.10.20.30.1-0.6-0.1-0.6
Bone: cortical area0.30.40.70.00.80.60.7
Bone: cortical porosity0.20.20.60.8-0.10.10.1
Bone: cortical porosity0.20.20.70.8-0.4-0.3-0.2
Bone: cortical thickness1.42.44.82.21.30.41.7
Bone: cortical thickness0.20.31.11.0-0.20.1-0.1
Bone: cortical tissue density0.20.20.4-0.0-0.6-0.1-0.7
Bone: elastic displacement0.20.20.50.7-0.20.50.1
Bone: elastic work0.20.20.40.20.50.60.6
Bone: endosteal estimation2.04.410.4-3.2-1.6-0.3-2.2
Bone: endosteal perimeter0.61.34.7-2.2-0.10.1-0.6
Bone: final force0.10.20.5-0.70.40.10.2
Bone: final moment0.10.20.4-0.70.50.10.3
Bone: marrow area2.04.410.5-3.2-1.5-0.4-2.1
Bone: maximum diameter0.30.51.6-1.20.50.50.1
Bone: maximum force0.20.30.7-0.80.40.50.2
Bone: maximum moment0.10.20.5-0.70.30.40.2
Bone: minimum diameter1.52.89.7-3.10.21.2-0.4
Bone: periosteal estimation0.61.13.7-1.9-0.30.4-0.7
Bone: periosteal perimeter0.30.51.0-1.00.70.50.4
Bone: post-yield work0.70.91.2-1.11.00.90.8
Bone: stiffness0.00.10.10.10.30.10.3
Bone: tissue strength0.20.20.60.80.0-0.30.2
Bone: trabecular number0.40.71.20.1-0.9-1.1-0.8
Bone: trabecular spacing0.81.03.71.9-0.3-0.60.0
Bone: trabecular thickness0.20.20.8-0.9-0.10.1-0.3
Bone: trabecular tissue density0.50.72.11.4-0.6-0.5-0.4
Breakpoint value in progressive ratio session0.10.10.20.20.40.40.3
Distance traveled before self-admin0.00.00.1-0.20.00.3-0.1
Distance traveled after self-admin1.21.42.5-0.4-1.6-0.8-1.5
Delta time in closed arm before/after self-admin1.61.62.4-0.1-1.4-1.6-1.3
Delta time in open arm before/after self-admin0.20.20.7-0.8-0.00.5-0.2
Diff in mean of infusions in LGA sessions1.82.04.1-0.62.00.91.7
Extinction: sum of active levers before priming0.70.71.4-0.31.20.71.0
Active lever presses in extinction session 66.56.212.90.42.43.62.4
Delta distance traveled before/after self-admin1.92.03.40.1-1.8-1.4-1.7
Delta ambulatory time before/after self-admin2.12.33.40.2-1.9-1.7-1.7
Time in closed arm before self-admin0.30.40.5-0.7-0.6-0.4-0.7
Time in closed arm after self-admin7.07.310.0-0.8-3.2-3.0-3.1
Time in open arm before self-admin0.10.10.10.4-0.1-0.30.0
Time in open arm after self-admin1.71.82.8-0.51.61.71.3
Sum of active levers in priming session hrs 5-62.72.65.1-0.01.72.21.6
Time to tail flick, vehicle, before self-admin1.91.93.81.90.41.80.9
Time to tail flick, vehicle, after self-admin1.01.11.7-1.3-0.8-0.9-1.1
Time to tail flick, test, before self-admin1.51.52.31.0-1.3-1.5-1.0
Time to tail flick, test, after self-admin2.62.75.30.9-1.6-2.3-1.4
Delta time to tail flick, vehicle, before/after SA1.91.84.0-2.0-0.6-1.4-1.1
Delta time to tail flick, test, before/after SA0.00.00.0-0.0-0.00.0-0.1
Ambulatory time before self-admin0.40.40.7-0.90.50.90.2
Ambulatory time after self-admin0.60.71.0-0.8-1.0-0.3-1.0
Total heroin consumption1.41.73.61.91.0-0.91.2
Area under the delay curve2.72.84.70.5-1.8-2.2-1.8
Delay disc. indifference point, 0s delay1.61.72.4-0.1-1.4-1.6-1.5
Delay disc. indifference point, 16s delay0.90.91.60.1-1.3-0.8-1.2
Delay disc. indifference point, 2s delay1.92.13.1-0.2-1.7-1.5-1.8
Delay disc. indifference point, 24s delay1.41.32.41.3-0.9-1.5-0.7
Delay disc. indifference point, 4s delay2.72.86.10.0-1.6-2.5-1.6
Delay disc. indifference point, 8s delay1.61.73.90.9-1.0-2.0-0.9
Delay discount exponential model param2.52.64.6-0.51.72.11.6
Delay discount hyperbolic model param2.72.94.8-0.41.82.21.8
Fecal boli incidents, locomotor time 10.91.01.30.5-1.2-1.1-1.1
Change in fecal boli incidents, locomotor task1.41.42.71.70.0-1.60.3
Time >=10cm from walls, locomotor time 10.90.91.41.01.10.21.2
Bouts of movement, locomotor time 10.10.10.2-0.10.50.30.4
Total resting periods, locomotor time 10.10.10.3-0.10.50.10.4
Rest time, locomotor task time 12.42.65.1-0.7-1.5-2.3-1.6
Distance moved, locomotor task time 10.50.61.20.60.51.10.7
Vertical activity count, locomotor time 11.71.84.0-0.01.32.01.3
Time >=10cm from walls, locomotor time 20.20.20.6-0.8-0.40.3-0.5
Bouts of movement, locomotor time 20.60.61.3-1.10.2-1.1-0.2
Total resting periods, locomotor time 20.40.51.7-0.40.3-1.30.0
Rest time, locomotor task time 20.50.60.70.80.7-0.80.7
Distance moved, locomotor task time 20.70.81.0-0.8-1.00.7-1.0
Vertical activity count, locomotor time 20.60.71.1-1.1-0.70.5-0.8
Weight adjusted by age0.80.92.41.5-0.1-1.10.1
Seeking ratio, delayed vs. immediate footshock0.80.92.00.2-1.4-0.7-1.0
Locomotion in novel chamber0.30.40.60.50.80.50.8
Locomotion in novel chamber post-restriction0.70.91.9-1.4-0.70.1-1.0
Progressive ratio0.10.10.2-0.20.4-0.10.3
Food seeking constrained by brief footshock0.50.62.31.50.20.10.3
Seeking ratio, punishment vs. effort0.30.31.21.1-0.40.1-0.2
Run reversals in cocaine runway, females0.50.51.10.9-0.3-1.1-0.2
Run reversals in cocaine runway, males0.70.61.40.21.00.41.2
Latency to leave start box in cocaine runway0.60.71.40.0-0.9-1.2-0.7
Latency to leave start box in cocaine runway, F1.11.22.00.0-1.4-1.4-1.0
Latency to leave start box in cocaine runway, M0.10.10.3-0.60.20.00.1
Cd content in liver0.90.91.31.20.71.01.0
Co content in liver0.20.20.3-0.1-0.5-0.5-0.5
Cu content in liver0.10.10.1-0.10.30.30.3
Fe content in liver2.63.17.3-0.51.62.71.5
K content in liver0.60.60.9-0.9-0.8-0.1-0.9
Mg content in liver0.40.40.9-0.9-0.30.6-0.4
Mn content in liver1.11.31.5-1.1-1.0-1.2-1.2
Na content in liver1.31.44.3-2.10.90.30.4
Rb content in liver0.30.41.01.0-0.60.3-0.3
Se content in liver1.41.63.00.51.21.71.4
Sr content in liver0.90.82.51.6-0.3-0.80.1
Zn content in liver0.91.01.70.61.20.61.3