Eif4e

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000052343 0.11 0.06 1.1e-03 0.04 0.04 0.03 0.04 4.6e-03 5.4e-03 9.9e-03 2.9e-03
2 Brain gene expression ENSRNOG00000052343 0.07 0.04 2.3e-04 0.02 0.02 0.01 0.02 4.1e-03 3.6e-03 1.5e-02 5.2e-03
3 Brain isoform ratio ENSRNOT00000102814 0.05 0.03 6.2e-03 0 0.02 0.01 0.01 3.0e-01 9.7e-03 1.7e-02 2.1e-02
4 OFC intron excision ratio chr2:227089221:227091861 0.22 0.11 3.0e-03 0.1 0.03 0.05 0.09 2.9e-03 6.0e-02 3.0e-02 4.2e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail2.78.716.54.12.81.7-2.7
BMI without tail3.26.717.44.22.70.5-1.3
Body weight2.410.326.95.22.90.9-2.2
Epididymis fat weight0.20.51.61.30.60.1-0.3
Glucose0.60.92.00.80.80.4-1.4
Heart weight0.20.31.10.2-0.1-1.10.2
Left kidney weight1.13.26.72.61.01.0-2.0
Right kidney weight1.23.48.93.01.60.5-1.4
Tail length0.20.61.81.40.6-0.50.3
Length with tail0.51.74.62.11.3-0.5-0.4
Length without tail0.61.32.61.31.60.2-1.1
Liver weight, left0.20.40.90.00.90.40.6
Liver weight, right0.91.44.40.82.10.8-0.2
Parametrial fat weight0.51.02.80.91.70.40.3
Retroperitoneal fat weight0.72.34.92.21.80.4-1.0
Intraocular pressure0.91.32.9-0.10.2-1.51.7
Extensor digitorum longus weight2.49.526.75.22.4-2.3-0.5
Soleus weight0.31.02.31.50.2-1.30.3
Tibialis anterior weight3.010.529.25.42.5-2.2-1.2
Tibia length0.71.93.81.91.5-1.2-0.4
Number of licking bursts1.82.24.40.71.42.1-1.3
Food consumed during 24 hour testing period0.70.81.61.30.10.5-1.2
Times rat made contact with spout1.01.22.70.60.81.0-1.6
Mean time between licks in bursts0.30.50.9-0.10.60.9-0.8
Mean num. licks in bursts0.50.61.9-0.2-0.7-1.40.1
Std. dev. time between licks in bursts1.51.84.4-1.0-0.82.1-1.1
Water consumed over 24 hours0.60.71.61.30.60.4-0.8
Indifference point 0 sec0.61.02.0-1.1-0.81.4-0.1
Indifference point AUC1.21.42.41.41.60.7-0.9
Indifference point function ln k0.50.71.5-0.8-1.20.7-0.4
Indifference point function log k0.50.71.5-0.8-1.20.7-0.4
Delay discounting total patch changes 0 sec0.61.02.4-0.9-0.71.5-0.2
Delay discounting total patch changes 12 sec0.71.01.90.50.51.4-1.2
Delay discounting total patch changes 18 sec1.01.44.30.30.42.1-1.0
Delay discounting total patch changes 24 sec0.20.20.80.3-0.10.9-0.0
Delay discounting total patch changes 6 sec2.94.49.01.21.73.0-2.1
Delay discounting time to switch 0 sec0.60.91.3-0.6-0.8-1.21.2
Delay discounting water rate 0 sec0.81.21.51.01.21.1-1.1
Delay discounting water rate 12 sec0.81.12.61.60.70.6-1.0
Delay discounting water rate 18 sec3.34.36.12.12.51.5-2.1
Delay discounting water rate 24 sec1.92.63.21.41.41.8-1.7
Delay discounting water rate 6 sec2.43.56.81.90.71.8-2.6
Locomotor activity0.20.30.6-0.6-0.10.2-0.8
Locomotor testing distance0.30.40.7-0.7-0.8-0.1-0.7
Locomotor testing rearing2.53.99.40.10.12.5-3.1
Light reinforcement 10.61.11.71.0-0.11.2-1.3
Light reinforcement 20.00.00.1-0.2-0.2-0.1-0.2
Reaction time number correct0.10.10.40.10.4-0.2-0.6
Reaction time mean minus median1.01.32.7-0.6-0.3-1.71.5
Reaction time mean minus median AUC0.60.71.3-0.6-0.5-1.11.0
Reaction time num false alarms2.94.05.1-1.6-2.1-1.92.2
Reaction time num false alarms AUC2.94.05.7-1.3-1.8-2.32.4
Reaction time trials correct on left0.10.10.40.10.4-0.2-0.6
Reaction time trials on left0.10.10.30.10.3-0.3-0.5
Reaction time mean0.70.92.9-0.6-0.4-1.70.5
Reaction time mean AUC0.81.03.2-0.5-0.6-1.80.5
Median of all reaction times0.30.51.8-0.2-0.2-1.3-0.1
Reaction time omissions1.82.45.4-0.6-0.2-2.32.0
Reaction time false alarm rate2.02.94.8-1.1-1.6-1.72.2
Reaction time premature initiation rate0.20.20.50.7-0.4-0.40.4
Reaction time premature initiations0.30.40.70.8-0.2-0.90.3
Std. dev. reaction times1.11.53.1-0.7-0.3-1.81.5
Reaction time trials completed0.10.10.30.10.3-0.3-0.5
Reaction time trials AUC0.10.10.30.20.5-0.2-0.6
Social response proportion0.70.81.4-0.8-0.3-1.20.9
Social responses0.60.81.70.71.30.3-0.9
Social time0.40.61.1-0.80.3-0.71.0
Conditioned locomotion2.42.85.4-1.3-1.1-2.31.7
Cocaine response after cond. corrected0.30.31.0-0.40.1-1.00.1
Cocaine response after cond. not corrected0.50.61.3-0.9-0.2-1.2-0.2
Cocaine response before conditioning0.20.20.3-0.5-0.6-0.0-0.4
Saline control response2.63.55.4-2.1-2.3-1.31.7
Condit. Reinf. active minus inactive responses0.91.13.31.01.8-0.1-0.1
Condit. Reinf. active-inactive response ratio2.12.25.81.42.40.8-0.7
Condit. Reinf. active responses0.60.82.11.01.4-0.0-0.4
Condit. Reinf. inactive responses0.10.10.20.3-0.4-0.1-0.1
Condit. Reinf. lever presses0.40.60.80.70.80.4-0.9
Condit. Reinf. lever reinforcers received0.50.71.61.01.3-0.0-0.4
Pavlov. Cond. lever latency0.50.70.9-0.9-0.8-0.90.6
Pavlov. Cond. magazine entry latency0.20.30.5-0.4-0.3-0.50.7
Pavlov. Cond. change in total contacts0.40.50.80.70.70.9-0.5
Pavlov. Cond. index score0.20.30.80.50.9-0.00.2
Pavlov. Cond. latency score0.10.20.50.20.70.30.2
Pavlov. Cond. lever contacts1.01.42.71.61.30.7-0.8
Pavlov. Cond. magazine entry number0.10.20.3-0.3-0.30.4-0.5
Pavlov. Cond. intertrial magazine entries0.91.11.51.11.20.6-1.2
Pavlov. Cond. lever-magazine prob. diff.0.20.30.80.60.9-0.00.2
Pavlov. Cond. response bias0.50.71.91.40.90.0-0.3
Conditioned reinforcement - actives0.90.92.0-0.6-1.1-0.31.4
Conditioned reinforcement - inactives2.02.33.7-1.7-1.9-0.91.2
Conditioned locomotion0.81.01.9-1.0-0.90.61.4
Intermittent access intake day 1-15 change0.00.00.10.10.30.20.1
Intermittent access intake escalation0.10.10.20.30.50.00.1
Intermittent access intake escalation 20.80.71.81.01.30.3-0.3
Intermitt. access day 1 inactive lever presses2.42.65.5-2.3-2.2-0.30.0
Intermitt. access day 15 inactive lever presses0.91.01.6-0.9-1.2-1.30.1
Intermitt. access escalation Index1.11.02.4-0.7-0.6-1.50.9
Intermittent access day 1 total infusions0.60.71.21.1-0.20.7-1.1
Intermittent access day 15 total infusions0.70.81.41.20.50.8-1.0
Intermittent access terminal intake (last 3 days)1.11.22.01.40.51.2-1.1
Intermittent access total infusions1.41.52.51.60.21.2-1.4
Intermittent access day 1 locomotion0.40.40.91.00.40.5-0.6
Intermittent access day 15 total locomotion0.20.20.50.20.70.30.0
Intermittent access total locomotion0.80.91.51.21.10.5-0.7
Intermittent access standard deviation1.31.32.81.71.30.8-0.5
Cocaine induced anxiety0.50.51.5-1.2-0.40.10.7
Post-drug Anxiety0.20.20.3-0.50.00.4-0.5
Baseline Anxiety1.31.33.40.80.41.0-1.9
Lifetime Intake0.60.71.11.0-0.40.9-0.8
Incentive Sensitization - Responses0.70.61.10.81.1-0.40.8
Incentive Sensitization - Breakpoint0.70.71.40.91.2-0.50.7
Progressive ratio test 1 active lever presses0.40.50.70.8-0.70.0-0.8
Progressive ratio test 1 breakpoint0.40.50.90.9-0.40.2-0.9
Progressive ratio test 1 inactive lever presses1.92.04.4-1.7-2.1-0.70.1
Progressive ratio test 2 active lever presses1.51.63.92.01.20.2-0.9
Progressive ratio test 2 breakpoint1.71.94.82.21.20.2-1.2
Progressive ratio test 2 inactive lever presses0.20.20.70.3-0.1-0.90.2
Total sessions with >9 infusions1.01.14.1-0.0-2.00.10.5
Short access day 1 total inactive lever presses0.80.91.8-1.0-1.30.8-0.6
Short access day 10 total inactive lever presses3.23.68.5-2.9-2.1-0.70.9
Short access day 1 total infusions0.80.91.9-0.8-1.40.70.7
Short access day 10 total infusions0.91.03.1-0.6-1.80.4-0.4
Short access total infusions0.50.61.90.1-1.40.5-0.1
Short access day 1 locomotion0.80.93.0-0.3-0.61.70.1
Short access day 10 total locomotion0.40.51.40.20.31.2-0.5
Short access total locomotion0.30.31.2-0.2-0.21.1-0.2
Compulsive drug intake0.10.10.3-0.00.6-0.2-0.3
One hour access (0.3 mA shock)1.41.62.81.71.40.9-1.0
One hour access (shock baseline)0.40.50.60.80.20.8-0.8
Number of responses in last shaping day0.30.30.8-0.0-0.9-0.30.5
Context. condit. distance diff. score1.01.23.90.10.52.0-0.9
Locomotion velocity, session 10.30.31.00.0-1.0-0.40.0
Locomotion distance, session 10.60.72.0-0.2-1.40.8-0.5
Locomotion velocity, session 20.40.51.0-1.0-1.0-0.1-0.2
Locomotion distance, session 22.33.210.1-1.6-3.2-0.30.2
Locomotion velocity, session 30.10.20.3-0.1-0.6-0.10.5
Locomotion distance, session 30.10.10.3-0.2-0.30.5-0.1
Stereotopy head waving bouts, day 30.20.20.50.1-0.0-0.70.4
Stereotopy head waving duration, day 30.40.51.21.10.9-0.2-0.0
Locomotion velocity, session 70.40.40.80.30.10.8-0.9
Locomotion distance, session 71.41.84.80.1-0.22.2-1.5
Stereotopy head waving bouts, day 72.22.54.4-1.0-1.0-2.11.9
Stereotopy head waving duration, day 73.44.16.7-1.3-1.5-2.62.4
Locomotion velocity, session 80.20.30.6-0.7-0.80.3-0.2
Locomotion distance, session 81.42.03.9-0.4-1.72.0-1.1
Degree of sensitization distance1.61.63.50.50.61.9-1.6
Degree of sensitization stereotypy3.13.36.3-1.0-1.4-2.52.0
Condit. Reinf. active minus inactive responses0.80.91.70.9-0.11.3-0.9
Condit. Reinf. active-inactive response ratio3.23.46.22.51.21.8-1.7
Condit. Reinf. active responses0.60.82.4-0.8-1.60.3-0.1
Condit. Reinf. inactive responses3.13.65.4-2.3-2.1-1.61.4
Incentive salience index mean0.60.71.10.80.31.1-1.0
Condit. Reinf. lever presses0.10.10.30.10.5-0.10.1
Time in familiar zone, hab. session 10.40.31.2-0.2-0.2-0.31.1
Time in novel zone, hab. session 10.10.10.30.00.2-0.5-0.0
Total zone transitions, hab. session 11.21.75.4-0.5-2.3-0.40.9
Total locomotion distance, hab. session 10.40.61.3-1.0-1.10.30.4
Locomotion velocity, hab. session 10.30.40.7-0.7-0.80.7-0.3
Time in familiar zone, hab. session 21.21.32.61.21.6-0.6-0.8
Time in novel zone, hab. session 21.21.22.6-1.1-1.60.70.8
Total zone transitions, hab. session 20.50.62.20.2-1.50.40.1
Total locomotion distance, hab. session 20.30.40.80.2-0.50.8-0.9
Locomotion velocity, hab. session 20.30.40.6-0.2-0.70.8-0.7
Novel to familiar place preference ratio0.40.40.80.4-0.60.9-0.6
Novelty place preference0.60.61.00.5-0.61.0-0.9
Time in novel zone, NPP test0.60.71.00.7-0.51.0-1.0
Total zone transitions, NPP test0.30.50.60.7-0.70.6-0.8
Total locomotion distance, NPP test0.71.02.00.50.41.4-1.3
Locomotion velocity, NPP test1.01.42.60.70.61.5-1.6
Pavlov. Cond. lever latency0.40.51.71.30.0-0.2-0.6
Pavlov. Cond. magazine entry latency0.30.30.7-0.2-0.9-0.30.7
Pavlov. Cond. change in total contacts0.91.02.0-1.2-1.40.40.5
Pavlov. Cond. index score0.10.20.6-0.8-0.30.10.3
Pavlov. Cond. latency score0.20.31.0-1.0-0.30.10.4
Pavlov. Cond. lever contacts0.10.10.3-0.20.50.2-0.0
Pavlov. Cond. magazine entry number0.20.30.80.10.90.0-0.5
Pavlov. Cond. intertrial magazine entries0.10.10.4-0.00.20.70.1
Pavlov. Cond. lever-magazine prob. diff.0.20.20.6-0.8-0.40.3-0.1
Pavlov. Cond. response bias0.10.20.4-0.3-0.40.00.6
Bone: apparent density0.20.41.30.51.10.10.0
Bone surface0.20.30.70.50.8-0.40.3
Bone volume0.40.61.00.51.0-0.90.6
Bone: connectivity density0.20.30.8-0.30.50.90.0
Bone: cortical apparent density0.20.30.70.50.20.8-0.5
Bone: cortical area2.94.48.42.92.80.1-1.1
Bone: cortical porosity0.40.41.00.1-0.6-1.00.6
Bone: cortical porosity0.20.20.50.5-0.4-0.70.2
Bone: cortical thickness3.55.811.03.33.20.4-1.3
Bone: cortical thickness1.21.42.51.61.3-0.7-0.9
Bone: cortical tissue density0.30.30.80.50.20.9-0.5
Bone: elastic displacement1.31.53.01.71.60.1-0.6
Bone: elastic work3.54.68.32.92.80.5-1.5
Bone: endosteal estimation0.00.10.2-0.20.0-0.50.3
Bone: endosteal perimeter0.10.30.60.40.5-0.70.5
Bone: final force1.01.72.31.51.51.2-0.9
Bone: final moment1.11.82.71.51.61.1-1.0
Bone: marrow area0.00.10.2-0.3-0.0-0.40.2
Bone: maximum diameter0.50.92.21.11.5-0.2-0.3
Bone: maximum force1.11.94.31.42.11.0-0.5
Bone: maximum moment1.11.94.61.32.10.9-0.6
Bone: minimum diameter1.12.15.42.31.5-0.2-0.8
Bone: periosteal estimation0.71.42.91.71.6-0.4-0.5
Bone: periosteal perimeter0.81.32.71.61.3-0.90.1
Bone: post-yield work0.81.12.8-1.7-0.10.01.2
Bone: stiffness0.71.22.01.21.40.8-0.8
Bone: tissue strength2.52.54.11.62.01.5-1.0
Bone: trabecular number0.50.72.2-0.6-0.2-0.61.5
Bone: trabecular spacing1.11.53.30.71.01.1-1.8
Bone: trabecular thickness0.50.51.00.0-0.6-1.00.9
Bone: trabecular tissue density0.81.11.5-1.2-1.1-1.20.5
Breakpoint value in progressive ratio session2.42.74.70.91.12.2-2.0
Distance traveled before self-admin0.40.40.70.40.8-0.80.2
Distance traveled after self-admin0.80.91.30.81.10.9-0.9
Delta time in closed arm before/after self-admin0.90.91.6-0.6-1.1-0.61.3
Delta time in open arm before/after self-admin0.90.91.2-0.6-1.1-1.10.9
Diff in mean of infusions in LGA sessions1.92.14.2-0.00.71.9-2.0
Extinction: sum of active levers before priming3.23.25.42.31.41.0-2.1
Active lever presses in extinction session 60.80.72.4-0.4-0.31.6-0.5
Delta distance traveled before/after self-admin0.80.92.60.1-0.11.6-0.9
Delta ambulatory time before/after self-admin1.01.13.30.1-0.11.8-1.0
Time in closed arm before self-admin0.50.51.5-0.10.61.2-0.4
Time in closed arm after self-admin0.70.72.6-0.50.01.6-0.0
Time in open arm before self-admin1.41.52.71.61.1-0.3-1.4
Time in open arm after self-admin0.60.72.20.6-0.4-1.50.3
Sum of active levers in priming session hrs 5-62.32.34.30.61.41.6-2.1
Time to tail flick, vehicle, before self-admin1.01.02.6-1.6-1.0-0.40.4
Time to tail flick, vehicle, after self-admin0.91.01.8-0.20.8-1.31.3
Time to tail flick, test, before self-admin1.81.83.0-1.7-1.4-0.71.2
Time to tail flick, test, after self-admin0.20.20.20.40.40.2-0.4
Delta time to tail flick, vehicle, before/after SA0.80.81.71.01.3-0.40.6
Delta time to tail flick, test, before/after SA0.80.71.71.30.80.5-0.6
Ambulatory time before self-admin0.30.30.80.20.5-0.90.1
Ambulatory time after self-admin0.20.20.5-0.10.50.7-0.2
Total heroin consumption0.30.30.50.30.60.7-0.6
Area under the delay curve0.80.82.2-1.0-1.5-0.10.2
Delay disc. indifference point, 0s delay0.40.41.2-0.7-0.30.11.1
Delay disc. indifference point, 16s delay0.20.20.4-0.0-0.50.6-0.3
Delay disc. indifference point, 2s delay1.21.32.1-1.0-0.9-1.21.5
Delay disc. indifference point, 24s delay1.11.12.1-1.5-1.3-0.60.3
Delay disc. indifference point, 4s delay0.30.30.4-0.2-0.60.6-0.5
Delay disc. indifference point, 8s delay2.32.46.4-1.5-2.5-0.80.5
Delay discount exponential model param0.90.92.51.11.60.2-0.1
Delay discount hyperbolic model param0.80.92.21.21.50.2-0.2
Fecal boli incidents, locomotor time 10.80.91.6-1.2-0.7-0.90.8
Change in fecal boli incidents, locomotor task0.70.72.20.1-0.20.7-1.5
Time >=10cm from walls, locomotor time 12.12.13.10.71.71.8-1.4
Bouts of movement, locomotor time 10.80.91.50.61.10.6-1.2
Total resting periods, locomotor time 10.50.50.90.40.80.6-1.0
Rest time, locomotor task time 10.91.01.4-1.0-0.5-1.21.1
Distance moved, locomotor task time 10.50.61.40.60.10.8-1.2
Vertical activity count, locomotor time 10.50.50.70.80.30.8-0.8
Time >=10cm from walls, locomotor time 20.10.10.20.4-0.2-0.50.3
Bouts of movement, locomotor time 20.20.20.5-0.7-0.5-0.10.3
Total resting periods, locomotor time 20.30.30.9-1.0-0.6-0.00.3
Rest time, locomotor task time 20.50.61.0-1.0-0.5-0.90.6
Distance moved, locomotor task time 20.10.10.10.1-0.30.30.3
Vertical activity count, locomotor time 20.20.20.60.80.1-0.20.5
Weight adjusted by age0.60.61.8-0.8-1.40.00.1
Seeking ratio, delayed vs. immediate footshock1.31.53.2-1.8-1.4-0.70.7
Locomotion in novel chamber0.20.30.7-0.40.90.3-0.2
Locomotion in novel chamber post-restriction0.70.81.6-0.8-0.9-1.30.2
Progressive ratio0.70.92.40.70.5-1.60.5
Food seeking constrained by brief footshock1.92.43.61.91.90.9-1.3
Seeking ratio, punishment vs. effort1.01.23.30.20.21.8-1.2
Run reversals in cocaine runway, females0.40.40.9-0.5-0.40.3-1.0
Run reversals in cocaine runway, males0.70.71.70.4-0.70.5-1.3
Latency to leave start box in cocaine runway0.50.50.7-0.7-0.60.8-0.8
Latency to leave start box in cocaine runway, F0.20.20.5-0.3-0.20.7-0.4
Latency to leave start box in cocaine runway, M0.90.91.8-0.70.51.3-1.0
Cd content in liver0.70.81.40.90.51.2-0.9
Co content in liver0.30.41.21.1-0.6-0.0-0.1
Cu content in liver1.31.64.4-1.1-0.22.1-0.9
Fe content in liver0.40.51.2-1.1-0.60.10.7
K content in liver0.30.31.1-1.00.3-0.1-0.3
Mg content in liver0.40.41.1-1.0-0.20.4-0.5
Mn content in liver0.91.01.70.81.3-0.1-1.3
Na content in liver0.30.30.8-0.9-0.4-0.60.2
Rb content in liver0.20.30.4-0.6-0.60.50.3
Se content in liver0.00.00.1-0.1-0.4-0.10.1
Sr content in liver0.50.51.00.2-0.8-1.0-0.2
Zn content in liver3.13.49.2-1.80.43.0-1.1