Dcaf12

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA gene expression ENSRNOG00000050790 0.14 0.09 5.9e-05 0.07 0.06 0.06 0.06 2.0e-04 4.2e-04 3.0e-04 2.8e-04
2 Brain gene expression ENSRNOG00000050790 0.28 0.15 1.0e-13 0.15 0.13 0.15 0.14 3.6e-14 2.6e-12 1.5e-13 2.3e-13
3 Liver gene expression ENSRNOG00000050790 0.04 0.03 2.6e-03 0.02 0.02 0.02 0.02 6.1e-03 2.3e-03 2.0e-03 2.1e-03
4 Liver mRNA stability ENSRNOG00000050790 0.06 0.04 1.6e-06 0.02 0.05 0.05 0.04 9.4e-04 6.4e-06 6.3e-06 1.6e-05
5 PL gene expression ENSRNOG00000050790 0.05 0.04 6.1e-03 0.03 0.02 0.01 0.03 3.4e-03 8.3e-03 6.1e-02 4.4e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4 5
BMI with tail1.65.26.82.62.02.32.42.0
BMI without tail4.08.411.22.83.43.21.63.1
Body weight2.510.412.53.33.43.52.33.4
Epididymis fat weight0.41.01.80.81.11.10.31.4
Glucose0.60.91.30.81.11.00.21.1
Heart weight0.40.60.80.70.90.80.40.9
Left kidney weight0.51.42.30.91.51.4-0.01.5
Right kidney weight0.10.20.40.20.50.4-0.40.6
Tail length2.16.29.12.23.02.90.92.9
Length with tail0.72.43.81.21.91.80.01.9
Length without tail0.40.81.0-0.9-1.0-0.9-0.8-0.7
Liver weight, left0.61.01.51.01.21.10.61.0
Liver weight, right0.00.10.2-0.20.30.2-0.40.1
Parametrial fat weight0.10.20.60.10.80.5-0.30.4
Retroperitoneal fat weight0.10.40.7-0.4-0.8-0.70.1-0.7
Intraocular pressure2.13.05.31.52.32.00.61.8
Extensor digitorum longus weight4.919.725.14.64.54.83.15.0
Soleus weight0.41.34.8-1.20.2-0.2-2.20.1
Tibialis anterior weight6.823.531.14.75.35.42.75.6
Tibia length0.10.41.2-0.10.40.2-1.10.7
Number of licking bursts6.17.28.22.82.82.92.32.7
Food consumed during 24 hour testing period0.81.01.70.81.31.10.21.2
Times rat made contact with spout0.70.91.31.00.70.91.10.7
Mean time between licks in bursts0.40.60.7-0.9-0.8-0.7-0.5-0.8
Mean num. licks in bursts2.73.24.1-1.8-2.0-1.9-1.2-2.0
Std. dev. time between licks in bursts0.30.40.6-0.6-0.7-0.7-0.1-0.6
Water consumed over 24 hours1.21.51.71.31.31.30.91.2
Indifference point 0 sec0.61.03.4-0.40.70.4-1.81.0
Indifference point AUC5.46.48.82.43.02.81.32.7
Indifference point function ln k1.92.73.6-1.7-1.9-1.8-1.1-1.7
Indifference point function log k1.92.73.6-1.7-1.9-1.8-1.1-1.7
Delay discounting total patch changes 0 sec0.71.11.80.11.10.8-1.31.3
Delay discounting total patch changes 12 sec1.41.82.51.41.61.50.81.4
Delay discounting total patch changes 18 sec0.40.50.90.50.90.7-0.41.0
Delay discounting total patch changes 24 sec1.62.03.41.21.61.60.21.8
Delay discounting total patch changes 6 sec1.72.64.41.22.11.8-0.42.0
Delay discounting time to switch 0 sec1.62.53.9-1.4-1.9-1.8-0.1-2.0
Delay discounting water rate 0 sec0.91.52.40.81.51.3-0.51.6
Delay discounting water rate 12 sec0.00.10.20.00.00.1-0.40.3
Delay discounting water rate 18 sec0.40.61.40.90.40.51.20.4
Delay discounting water rate 24 sec0.20.20.60.2-0.5-0.20.8-0.4
Delay discounting water rate 6 sec1.11.72.31.31.31.40.81.5
Locomotor activity0.00.00.10.20.10.20.20.2
Locomotor testing distance0.10.10.4-0.30.10.1-0.60.3
Locomotor testing rearing1.11.82.61.21.51.50.51.6
Light reinforcement 11.32.44.40.52.11.7-0.72.0
Light reinforcement 20.91.21.9-0.21.40.8-1.31.2
Reaction time number correct0.10.10.3-0.40.20.0-0.60.1
Reaction time mean minus median1.11.55.81.2-0.10.32.4-0.1
Reaction time mean minus median AUC1.62.16.11.60.50.92.50.6
Reaction time num false alarms0.30.41.30.8-0.10.31.10.2
Reaction time num false alarms AUC0.60.91.41.20.60.91.10.8
Reaction time trials correct on left0.10.10.3-0.40.20.0-0.60.1
Reaction time trials on left0.10.10.4-0.50.0-0.1-0.6-0.0
Reaction time mean1.21.62.7-0.7-1.6-1.30.7-1.6
Reaction time mean AUC1.41.83.1-0.7-1.7-1.40.8-1.7
Median of all reaction times2.12.94.3-1.5-2.0-1.9-0.3-2.1
Reaction time omissions1.21.62.5-1.2-1.6-1.4-0.4-1.5
Reaction time false alarm rate0.20.31.10.8-0.10.21.00.1
Reaction time premature initiation rate2.43.24.9-1.5-2.2-2.0-0.4-2.2
Reaction time premature initiations1.92.73.7-1.5-1.9-1.8-0.7-1.9
Std. dev. reaction times0.81.03.20.4-0.9-0.51.8-0.9
Reaction time trials completed0.10.10.4-0.50.0-0.1-0.6-0.0
Reaction time trials AUC0.10.10.4-0.5-0.0-0.1-0.6-0.1
Social response proportion2.52.83.9-1.6-1.7-1.9-1.0-2.0
Social responses0.40.50.70.70.80.80.30.7
Social time0.10.20.5-0.5-0.2-0.3-0.7-0.3
Conditioned locomotion0.20.31.0-0.40.2-0.0-1.00.3
Cocaine response after cond. corrected1.82.04.3-1.6-1.0-1.2-2.1-0.9
Cocaine response after cond. not corrected1.61.84.6-1.5-0.8-1.0-2.1-0.6
Cocaine response before conditioning0.91.11.41.11.01.10.91.2
Saline control response1.21.62.81.01.51.50.01.7
Condit. Reinf. active minus inactive responses0.40.60.60.80.70.80.70.8
Condit. Reinf. active-inactive response ratio0.00.00.10.1-0.1-0.10.3-0.1
Condit. Reinf. active responses1.92.73.41.61.71.81.11.8
Condit. Reinf. inactive responses3.84.75.32.22.12.31.92.3
Condit. Reinf. lever presses2.33.24.32.01.31.72.11.6
Condit. Reinf. lever reinforcers received2.33.24.01.71.92.01.32.0
Pavlov. Cond. lever latency2.93.95.4-2.3-1.5-2.0-2.3-1.8
Pavlov. Cond. magazine entry latency0.20.20.5-0.3-0.7-0.40.0-0.5
Pavlov. Cond. change in total contacts0.91.33.61.40.20.71.90.4
Pavlov. Cond. index score0.30.41.30.80.00.51.10.3
Pavlov. Cond. latency score0.50.71.91.00.20.71.40.4
Pavlov. Cond. lever contacts1.41.92.71.61.01.41.51.3
Pavlov. Cond. magazine entry number0.30.31.3-0.60.2-0.2-1.1-0.0
Pavlov. Cond. intertrial magazine entries0.30.40.60.50.80.60.20.8
Pavlov. Cond. lever-magazine prob. diff.0.30.41.40.8-0.00.41.20.2
Pavlov. Cond. response bias0.70.91.71.20.50.91.30.7
Conditioned reinforcement - actives1.11.11.31.11.11.10.90.8
Conditioned reinforcement - inactives0.70.81.01.01.01.00.60.8
Conditioned locomotion0.50.60.80.70.90.80.50.7
Intermittent access intake day 1-15 change0.90.92.11.20.60.81.50.5
Intermittent access intake escalation0.90.91.31.10.80.91.10.7
Intermittent access intake escalation 22.12.13.81.71.11.32.01.0
Intermitt. access day 1 inactive lever presses0.50.50.90.51.00.80.10.8
Intermitt. access day 15 inactive lever presses0.20.20.30.30.60.5-0.20.5
Intermitt. access escalation Index0.80.71.20.71.11.00.21.0
Intermittent access day 1 total infusions0.60.61.3-1.0-0.4-0.7-1.1-0.6
Intermittent access day 15 total infusions0.40.40.70.60.80.70.40.6
Intermittent access terminal intake (last 3 days)1.41.62.11.21.51.40.81.3
Intermittent access total infusions0.70.81.50.71.21.00.40.9
Intermittent access day 1 locomotion1.92.02.6-1.6-1.0-1.3-1.5-1.4
Intermittent access day 15 total locomotion1.11.21.6-1.2-0.9-1.1-0.9-1.3
Intermittent access total locomotion0.50.61.3-0.6-0.8-0.8-0.2-1.1
Intermittent access standard deviation0.60.60.80.80.90.80.80.6
Cocaine induced anxiety0.30.40.5-0.7-0.6-0.6-0.6-0.5
Post-drug Anxiety0.60.71.10.71.00.90.30.9
Baseline Anxiety0.60.71.21.00.60.71.10.5
Lifetime Intake1.21.32.70.71.61.3-0.11.3
Incentive Sensitization - Responses0.50.51.20.41.10.8-0.10.7
Incentive Sensitization - Breakpoint0.30.30.80.20.90.6-0.20.5
Progressive ratio test 1 active lever presses0.70.81.50.61.21.00.11.0
Progressive ratio test 1 breakpoint1.01.01.90.71.41.20.11.2
Progressive ratio test 1 inactive lever presses1.41.52.90.51.71.3-0.51.5
Progressive ratio test 2 active lever presses0.50.51.20.11.10.7-0.60.7
Progressive ratio test 2 breakpoint0.20.30.6-0.10.70.4-0.70.4
Progressive ratio test 2 inactive lever presses0.70.81.40.71.21.00.21.0
Total sessions with >9 infusions0.50.61.0-0.11.00.6-0.90.8
Short access day 1 total inactive lever presses3.03.35.71.42.42.10.32.1
Short access day 10 total inactive lever presses0.40.40.50.70.70.70.40.7
Short access day 1 total infusions3.03.25.51.22.32.0-0.12.2
Short access day 10 total infusions0.60.71.3-0.01.10.7-0.90.8
Short access total infusions1.11.22.50.31.61.2-0.71.3
Short access day 1 locomotion0.60.61.4-1.0-0.2-0.5-1.2-0.5
Short access day 10 total locomotion1.01.12.1-0.8-1.1-1.1-0.2-1.5
Short access total locomotion0.10.10.3-0.50.2-0.1-0.6-0.2
Compulsive drug intake0.10.10.3-0.10.30.2-0.50.3
One hour access (0.3 mA shock)0.50.61.10.41.10.8-0.40.9
One hour access (shock baseline)0.40.51.10.11.00.7-0.40.8
Number of responses in last shaping day1.01.02.5-0.41.00.6-1.61.0
Context. condit. distance diff. score0.10.10.1-0.3-0.4-0.30.0-0.3
Locomotion velocity, session 11.61.75.6-0.71.10.5-2.41.0
Locomotion distance, session 10.50.61.9-0.50.70.3-1.40.5
Locomotion velocity, session 21.72.02.31.51.51.51.21.4
Locomotion distance, session 21.52.13.61.11.91.7-0.11.8
Locomotion velocity, session 30.30.31.1-0.40.40.3-1.00.5
Locomotion distance, session 31.41.52.50.91.61.50.11.5
Stereotopy head waving bouts, day 30.10.10.40.10.20.2-0.60.4
Stereotopy head waving duration, day 30.00.00.10.0-0.2-0.0-0.20.1
Locomotion velocity, session 70.10.10.1-0.4-0.3-0.2-0.1-0.1
Locomotion distance, session 70.10.10.30.10.50.4-0.10.5
Stereotopy head waving bouts, day 73.23.64.32.12.02.11.22.1
Stereotopy head waving duration, day 71.21.52.01.41.21.30.71.4
Locomotion velocity, session 80.30.41.1-0.30.60.3-1.10.6
Locomotion distance, session 80.20.30.5-0.10.70.5-0.70.7
Degree of sensitization distance0.70.71.0-0.8-1.0-0.9-0.3-0.9
Degree of sensitization stereotypy1.71.92.21.51.41.51.01.5
Condit. Reinf. active minus inactive responses0.60.60.90.70.80.90.50.9
Condit. Reinf. active-inactive response ratio0.50.50.7-0.6-0.9-0.8-0.4-0.8
Condit. Reinf. active responses2.83.44.21.81.92.01.32.1
Condit. Reinf. inactive responses3.03.54.11.91.92.01.61.9
Incentive salience index mean4.25.07.12.12.52.51.12.7
Condit. Reinf. lever presses9.312.518.33.24.03.91.44.3
Time in familiar zone, hab. session 11.01.02.60.4-1.0-0.61.6-0.9
Time in novel zone, hab. session 12.62.56.7-2.0-0.7-1.0-2.6-0.7
Total zone transitions, hab. session 10.10.10.2-0.3-0.2-0.3-0.3-0.4
Total locomotion distance, hab. session 10.40.51.80.90.10.31.3-0.0
Locomotion velocity, hab. session 11.11.62.81.51.01.11.70.8
Time in familiar zone, hab. session 20.80.91.5-0.1-1.2-0.90.7-1.2
Time in novel zone, hab. session 21.41.43.6-1.6-0.5-0.8-1.9-0.4
Total zone transitions, hab. session 20.40.50.90.11.00.6-0.70.7
Total locomotion distance, hab. session 20.50.60.90.81.00.90.50.7
Locomotion velocity, hab. session 20.60.81.20.91.10.90.60.8
Novel to familiar place preference ratio3.53.65.0-2.2-1.6-1.8-2.2-1.6
Novelty place preference4.54.75.8-2.4-2.0-2.2-2.3-1.9
Time in novel zone, NPP test5.35.66.9-2.6-2.1-2.4-2.5-2.1
Total zone transitions, NPP test0.30.50.90.21.00.7-0.60.8
Total locomotion distance, NPP test0.91.32.40.91.61.30.11.3
Locomotion velocity, NPP test1.21.83.01.21.71.50.41.5
Pavlov. Cond. lever latency7.910.114.3-3.1-3.4-3.5-1.7-3.8
Pavlov. Cond. magazine entry latency0.20.30.50.50.50.60.20.7
Pavlov. Cond. change in total contacts2.72.94.61.51.91.90.52.1
Pavlov. Cond. index score3.24.15.62.02.12.21.22.4
Pavlov. Cond. latency score3.03.85.41.92.02.11.12.3
Pavlov. Cond. lever contacts5.56.59.42.52.72.81.33.1
Pavlov. Cond. magazine entry number0.50.70.9-0.8-0.9-1.0-0.5-1.0
Pavlov. Cond. intertrial magazine entries0.30.30.40.60.60.60.50.5
Pavlov. Cond. lever-magazine prob. diff.2.83.64.52.01.92.01.32.1
Pavlov. Cond. response bias2.83.44.81.72.02.10.92.2
Bone: apparent density1.01.62.01.41.01.31.41.2
Bone surface0.50.81.30.81.01.10.31.1
Bone volume0.50.91.10.90.91.10.71.0
Bone: connectivity density0.40.61.10.80.50.71.10.6
Bone: cortical apparent density0.20.31.10.2-0.4-0.11.0-0.4
Bone: cortical area2.13.13.82.01.61.81.81.7
Bone: cortical porosity0.30.30.5-0.4-0.7-0.7-0.2-0.7
Bone: cortical porosity0.00.00.00.2-0.0-0.00.20.0
Bone: cortical thickness0.91.53.31.40.71.01.80.8
Bone: cortical thickness0.10.20.30.1-0.6-0.40.4-0.4
Bone: cortical tissue density0.20.30.80.1-0.4-0.20.9-0.5
Bone: elastic displacement5.36.08.2-2.3-2.9-2.7-1.1-2.9
Bone: elastic work1.92.54.6-0.7-2.1-1.70.7-2.0
Bone: endosteal estimation0.92.03.11.11.71.6-0.01.7
Bone: endosteal perimeter0.81.72.80.91.61.5-0.11.7
Bone: final force1.22.02.31.51.41.51.21.5
Bone: final moment1.01.62.01.41.11.31.31.2
Bone: marrow area1.02.03.11.21.71.70.21.8
Bone: maximum diameter2.03.74.62.02.02.11.42.0
Bone: maximum force3.05.36.12.52.22.42.02.4
Bone: maximum moment2.44.15.12.31.82.12.02.0
Bone: minimum diameter0.00.10.2-0.2-0.4-0.30.1-0.4
Bone: periosteal estimation1.42.83.81.61.81.90.91.9
Bone: periosteal perimeter0.40.71.20.51.11.0-0.21.1
Bone: post-yield work1.31.82.61.31.51.50.41.6
Bone: stiffness4.16.57.52.72.52.72.12.6
Bone: tissue strength0.20.10.30.50.30.30.50.2
Bone: trabecular number1.01.52.51.40.91.21.61.0
Bone: trabecular spacing0.10.10.40.50.10.20.70.1
Bone: trabecular thickness0.20.20.4-0.4-0.7-0.5-0.2-0.5
Bone: trabecular tissue density3.54.95.72.42.32.41.62.3
Breakpoint value in progressive ratio session1.01.12.8-1.2-0.7-0.8-1.7-0.5
Distance traveled before self-admin6.57.011.22.23.12.90.93.3
Distance traveled after self-admin2.83.13.82.01.51.81.71.8
Delta time in closed arm before/after self-admin1.41.32.01.31.01.11.40.8
Delta time in open arm before/after self-admin0.20.20.5-0.7-0.2-0.4-0.6-0.2
Diff in mean of infusions in LGA sessions0.10.10.4-0.1-0.6-0.4-0.0-0.2
Extinction: sum of active levers before priming1.21.21.8-1.0-1.3-1.2-0.5-1.3
Active lever presses in extinction session 61.91.92.2-1.4-1.2-1.4-1.3-1.5
Delta distance traveled before/after self-admin0.20.20.4-0.2-0.5-0.30.3-0.6
Delta ambulatory time before/after self-admin0.60.71.1-0.6-1.1-0.90.0-1.1
Time in closed arm before self-admin3.23.64.6-2.0-1.8-2.1-1.4-2.1
Time in closed arm after self-admin0.40.40.7-0.6-0.6-0.7-0.2-0.8
Time in open arm before self-admin2.52.74.81.31.91.80.22.2
Time in open arm after self-admin1.41.52.60.91.51.40.21.6
Sum of active levers in priming session hrs 5-64.34.25.0-2.2-1.9-2.1-2.2-1.9
Time to tail flick, vehicle, before self-admin2.52.53.5-1.4-1.9-1.8-0.9-1.7
Time to tail flick, vehicle, after self-admin0.00.00.0-0.20.20.1-0.20.1
Time to tail flick, test, before self-admin0.60.60.70.70.80.80.70.7
Time to tail flick, test, after self-admin0.10.10.40.20.10.10.6-0.2
Delta time to tail flick, vehicle, before/after SA0.70.71.20.61.10.90.30.9
Delta time to tail flick, test, before/after SA0.60.50.8-0.7-0.7-0.8-0.4-0.9
Ambulatory time before self-admin4.44.68.31.62.62.40.32.9
Ambulatory time after self-admin0.91.01.90.90.91.00.51.4
Total heroin consumption0.30.30.9-0.6-0.3-0.4-0.9-0.2
Area under the delay curve0.80.91.2-1.1-0.8-0.9-1.1-0.7
Delay disc. indifference point, 0s delay1.21.31.6-1.1-1.1-1.2-1.3-1.0
Delay disc. indifference point, 16s delay1.51.52.8-1.6-0.6-1.0-1.7-0.9
Delay disc. indifference point, 2s delay0.20.20.60.60.10.30.80.2
Delay disc. indifference point, 24s delay0.40.40.7-0.7-0.5-0.6-0.5-0.8
Delay disc. indifference point, 4s delay0.20.20.4-0.3-0.6-0.6-0.2-0.6
Delay disc. indifference point, 8s delay0.10.10.1-0.3-0.3-0.2-0.2-0.1
Delay discount exponential model param0.80.81.11.00.70.81.00.7
Delay discount hyperbolic model param0.60.71.01.00.70.81.00.7
Fecal boli incidents, locomotor time 11.71.82.5-1.3-1.6-1.5-0.8-1.4
Change in fecal boli incidents, locomotor task0.90.91.50.51.21.1-0.01.2
Time >=10cm from walls, locomotor time 10.00.00.10.00.20.1-0.30.2
Bouts of movement, locomotor time 10.91.02.0-0.8-1.4-1.1-0.0-1.1
Total resting periods, locomotor time 11.51.73.3-0.9-1.8-1.40.2-1.5
Rest time, locomotor task time 11.81.93.4-0.1-1.8-1.31.2-1.8
Distance moved, locomotor task time 12.22.44.30.82.11.7-0.52.0
Vertical activity count, locomotor time 11.41.52.80.41.71.3-0.81.5
Time >=10cm from walls, locomotor time 20.00.00.10.20.30.2-0.10.1
Bouts of movement, locomotor time 20.91.01.21.00.80.91.11.1
Total resting periods, locomotor time 20.50.51.00.70.40.61.00.8
Rest time, locomotor task time 20.50.61.5-0.2-1.2-0.80.3-0.9
Distance moved, locomotor task time 20.30.30.50.60.70.60.40.4
Vertical activity count, locomotor time 20.20.30.60.30.80.5-0.30.5
Weight adjusted by age0.40.41.4-0.50.20.1-1.20.6
Seeking ratio, delayed vs. immediate footshock3.13.64.31.82.12.11.42.0
Locomotion in novel chamber0.10.10.3-0.1-0.4-0.30.3-0.6
Locomotion in novel chamber post-restriction2.02.44.51.90.91.32.11.2
Progressive ratio0.30.30.7-0.7-0.1-0.4-0.8-0.5
Food seeking constrained by brief footshock8.210.016.32.54.03.60.93.7
Seeking ratio, punishment vs. effort3.44.15.52.02.12.21.32.3
Run reversals in cocaine runway, females0.20.20.4-0.3-0.4-0.40.6-0.6
Run reversals in cocaine runway, males0.00.00.10.1-0.1-0.00.3-0.1
Latency to leave start box in cocaine runway0.91.01.21.00.91.00.91.1
Latency to leave start box in cocaine runway, F0.10.10.2-0.4-0.1-0.2-0.50.1
Latency to leave start box in cocaine runway, M2.32.23.31.41.51.60.81.8
Cd content in liver1.21.32.11.11.11.11.50.8
Co content in liver0.91.11.6-1.2-0.8-1.0-1.3-0.8
Cu content in liver0.60.71.4-0.5-1.0-0.90.1-1.2
Fe content in liver0.50.61.7-0.30.60.4-1.30.8
K content in liver0.50.50.9-0.8-0.5-0.7-1.0-0.5
Mg content in liver1.21.21.4-1.1-1.1-1.2-0.9-1.1
Mn content in liver0.60.71.71.20.10.51.30.6
Na content in liver0.70.81.1-0.7-1.0-1.1-0.4-1.0
Rb content in liver4.05.05.7-2.4-2.3-2.3-1.9-2.2
Se content in liver2.63.14.42.11.61.71.91.5
Sr content in liver0.50.50.70.80.50.70.80.6
Zn content in liver0.10.10.60.3-0.20.00.7-0.3