Zfpl1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000050180 0.04 0.03 1.2e-03 0.02 0.01 0.01 0.01 2.4e-03 7.8e-03 8.7e-03 9.4e-03
2 Eye alternative TSS ENSRNOT00000075165 0.34 0.17 9.7e-03 0.18 0.11 0.11 0.13 1.0e-03 1.1e-02 1.1e-02 5.5e-03
3 Liver gene expression ENSRNOG00000050180 0.06 0.03 2.0e-05 0.01 0.03 0.02 0.01 2.8e-02 5.4e-04 1.4e-03 8.3e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail3.611.722.7-3.04.8-1.8
BMI without tail1.42.86.0-1.42.4-0.7
Body weight2.912.218.2-4.32.7-3.3
Epididymis fat weight1.74.07.72.8-0.42.0
Glucose1.42.13.31.80.61.6
Heart weight3.14.46.92.4-0.82.6
Left kidney weight0.30.81.91.4-0.30.7
Right kidney weight0.10.20.30.5-0.3-0.6
Tail length0.61.82.6-1.3-1.6-1.1
Length with tail1.45.38.8-3.0-0.5-2.6
Length without tail1.83.96.9-2.60.3-2.1
Liver weight, left0.00.00.10.2-0.10.2
Liver weight, right0.30.40.60.3-0.80.8
Parametrial fat weight1.42.74.32.10.81.8
Retroperitoneal fat weight3.511.719.84.4-1.03.8
Intraocular pressure0.60.81.21.1-1.1-0.2
Extensor digitorum longus weight5.722.934.3-5.93.2-4.9
Soleus weight3.08.813.83.7-1.23.3
Tibialis anterior weight8.027.442.7-6.51.7-6.0
Tibia length1.64.610.0-1.80.8-3.2
Number of licking bursts0.40.50.5-0.70.6-0.7
Food consumed during 24 hour testing period0.20.20.6-0.2-0.2-0.8
Times rat made contact with spout0.30.30.5-0.70.7-0.2
Mean time between licks in bursts0.50.71.2-1.0-1.10.3
Mean num. licks in bursts0.30.40.70.6-0.30.8
Std. dev. time between licks in bursts1.31.53.20.1-1.81.2
Water consumed over 24 hours0.50.50.9-1.0-0.0-0.8
Indifference point 0 sec0.00.00.10.10.20.2
Indifference point AUC3.44.06.3-2.20.9-2.5
Indifference point function ln k8.712.418.93.8-2.04.3
Indifference point function log k8.712.418.93.8-2.04.3
Delay discounting total patch changes 0 sec0.00.10.10.1-0.20.3
Delay discounting total patch changes 12 sec4.15.57.5-2.71.6-2.5
Delay discounting total patch changes 18 sec0.91.21.7-0.91.3-1.1
Delay discounting total patch changes 24 sec1.92.33.5-1.90.4-1.8
Delay discounting total patch changes 6 sec0.71.11.9-1.40.9-0.7
Delay discounting time to switch 0 sec3.24.88.3-1.82.9-1.7
Delay discounting water rate 0 sec4.57.29.22.7-3.02.3
Delay discounting water rate 12 sec10.916.318.03.9-4.24.0
Delay discounting water rate 18 sec4.35.77.32.2-2.22.7
Delay discounting water rate 24 sec5.37.37.72.7-2.82.6
Delay discounting water rate 6 sec6.08.810.52.6-3.23.1
Locomotor activity3.14.86.41.7-2.52.3
Locomotor testing distance4.67.79.32.2-3.13.0
Locomotor testing rearing3.65.66.52.1-2.42.5
Light reinforcement 10.10.20.30.5-0.20.4
Light reinforcement 20.40.51.51.20.1-0.1
Reaction time number correct0.20.30.4-0.5-0.5-0.6
Reaction time mean minus median4.15.37.7-2.21.8-2.8
Reaction time mean minus median AUC1.82.44.2-1.50.8-2.0
Reaction time num false alarms0.81.22.80.5-0.71.7
Reaction time num false alarms AUC0.30.41.1-0.1-0.21.0
Reaction time trials correct on left0.20.30.4-0.5-0.5-0.6
Reaction time trials on left0.30.40.5-0.6-0.5-0.7
Reaction time mean0.30.40.9-0.30.6-0.9
Reaction time mean AUC0.40.50.8-0.20.8-0.9
Median of all reaction times0.10.10.20.20.4-0.4
Reaction time omissions1.21.61.9-1.41.0-1.4
Reaction time false alarm rate0.60.82.20.4-0.11.5
Reaction time premature initiation rate1.01.43.5-1.9-0.3-0.7
Reaction time premature initiations1.82.65.6-2.4-0.5-1.4
Std. dev. reaction times1.41.93.2-1.21.1-1.8
Reaction time trials completed0.30.40.5-0.6-0.5-0.7
Reaction time trials AUC0.10.20.3-0.4-0.5-0.4
Social response proportion1.01.11.7-1.20.4-1.3
Social responses0.30.40.5-0.6-0.7-0.5
Social time0.30.50.8-0.6-0.9-0.5
Conditioned locomotion1.01.22.4-1.50.1-1.1
Cocaine response after cond. corrected2.22.53.71.5-1.31.9
Cocaine response after cond. not corrected1.71.92.91.3-1.11.7
Cocaine response before conditioning0.91.11.7-1.00.8-1.3
Saline control response2.73.66.9-2.60.9-1.8
Condit. Reinf. active minus inactive responses0.10.10.20.40.4-0.2
Condit. Reinf. active-inactive response ratio0.40.40.70.90.7-0.1
Condit. Reinf. active responses0.20.30.8-0.20.9-0.4
Condit. Reinf. inactive responses0.20.20.4-0.60.6-0.0
Condit. Reinf. lever presses2.63.65.4-1.81.5-2.3
Condit. Reinf. lever reinforcers received0.50.60.8-0.60.9-0.9
Pavlov. Cond. lever latency0.81.11.70.8-0.91.3
Pavlov. Cond. magazine entry latency3.54.04.5-2.11.8-2.0
Pavlov. Cond. change in total contacts3.44.76.6-1.62.2-2.6
Pavlov. Cond. index score3.14.15.4-1.81.9-2.3
Pavlov. Cond. latency score2.73.44.3-1.61.8-2.1
Pavlov. Cond. lever contacts0.71.02.0-0.90.4-1.4
Pavlov. Cond. magazine entry number6.47.910.03.0-2.23.2
Pavlov. Cond. intertrial magazine entries0.81.11.81.4-0.51.1
Pavlov. Cond. lever-magazine prob. diff.3.54.65.9-2.01.9-2.4
Pavlov. Cond. response bias2.12.94.6-1.71.1-2.1
Conditioned reinforcement - actives0.20.20.30.6-0.4-0.5
Conditioned reinforcement - inactives3.43.87.82.8-1.31.4
Conditioned locomotion5.97.011.43.4-2.12.3
Intermittent access intake day 1-15 change0.60.61.10.8-1.0-0.1
Intermittent access intake escalation0.30.30.60.8-0.70.0
Intermittent access intake escalation 20.30.30.60.3-0.8-0.5
Intermitt. access day 1 inactive lever presses1.41.52.81.7-0.41.2
Intermitt. access day 15 inactive lever presses1.21.43.21.8-0.50.8
Intermitt. access escalation Index3.53.15.52.0-0.12.4
Intermittent access day 1 total infusions3.94.47.52.70.82.2
Intermittent access day 15 total infusions4.65.210.83.3-0.62.1
Intermittent access terminal intake (last 3 days)2.93.27.42.7-0.01.4
Intermittent access total infusions2.83.16.62.60.51.6
Intermittent access day 1 locomotion3.63.75.52.20.82.4
Intermittent access day 15 total locomotion2.83.06.52.5-0.21.5
Intermittent access total locomotion3.84.28.42.90.81.9
Intermittent access standard deviation0.80.91.71.3-0.90.5
Cocaine induced anxiety0.10.10.3-0.0-0.1-0.6
Post-drug Anxiety1.51.73.4-1.3-0.0-1.8
Baseline Anxiety1.61.73.3-1.80.1-1.3
Lifetime Intake2.73.05.72.40.61.8
Incentive Sensitization - Responses0.20.20.50.70.20.1
Incentive Sensitization - Breakpoint0.30.30.80.90.10.2
Progressive ratio test 1 active lever presses2.12.14.22.0-0.61.4
Progressive ratio test 1 breakpoint1.92.03.71.9-0.71.3
Progressive ratio test 1 inactive lever presses1.11.21.81.3-0.31.3
Progressive ratio test 2 active lever presses2.42.65.82.4-0.51.3
Progressive ratio test 2 breakpoint3.53.97.62.7-1.11.7
Progressive ratio test 2 inactive lever presses4.95.712.23.5-0.52.1
Total sessions with >9 infusions1.61.83.11.50.21.8
Short access day 1 total inactive lever presses2.93.34.82.2-0.52.2
Short access day 10 total inactive lever presses3.84.26.62.1-1.22.6
Short access day 1 total infusions2.52.63.61.90.81.9
Short access day 10 total infusions2.02.22.81.41.71.4
Short access total infusions1.51.62.21.40.91.5
Short access day 1 locomotion2.32.43.81.80.52.0
Short access day 10 total locomotion1.71.82.51.50.81.6
Short access total locomotion1.61.72.61.40.71.6
Compulsive drug intake1.11.12.7-1.7-0.4-0.6
One hour access (0.3 mA shock)7.08.115.33.9-1.42.7
One hour access (shock baseline)4.75.512.83.6-0.81.8
Number of responses in last shaping day1.71.72.01.3-1.21.4
Context. condit. distance diff. score1.62.03.21.6-0.21.8
Locomotion velocity, session 10.10.10.3-0.0-0.50.4
Locomotion distance, session 10.60.82.0-0.61.4-0.0
Locomotion velocity, session 22.22.63.2-1.81.6-1.4
Locomotion distance, session 20.70.92.0-0.91.4-0.2
Locomotion velocity, session 30.50.60.90.50.90.9
Locomotion distance, session 30.10.10.10.30.10.4
Stereotopy head waving bouts, day 30.70.91.80.80.21.3
Stereotopy head waving duration, day 30.60.71.11.0-0.01.0
Locomotion velocity, session 71.11.22.20.81.51.0
Locomotion distance, session 70.50.61.10.20.81.1
Stereotopy head waving bouts, day 70.20.20.40.40.6-0.2
Stereotopy head waving duration, day 71.41.72.1-1.01.4-1.5
Locomotion velocity, session 80.40.51.1-1.1-0.5-0.4
Locomotion distance, session 80.40.60.80.50.90.7
Degree of sensitization distance0.30.30.60.00.80.6
Degree of sensitization stereotypy1.01.11.8-0.71.1-1.3
Condit. Reinf. active minus inactive responses0.40.51.2-0.51.1-0.1
Condit. Reinf. active-inactive response ratio0.20.20.5-0.10.7-0.1
Condit. Reinf. active responses0.30.41.2-0.31.1-0.1
Condit. Reinf. inactive responses0.10.10.20.10.50.1
Incentive salience index mean0.70.82.0-0.61.4-0.2
Condit. Reinf. lever presses0.50.60.9-0.71.0-0.6
Time in familiar zone, hab. session 10.20.20.30.50.00.5
Time in novel zone, hab. session 10.70.71.30.4-1.20.8
Total zone transitions, hab. session 10.60.91.1-1.01.0-0.8
Total locomotion distance, hab. session 10.40.50.70.70.80.6
Locomotion velocity, hab. session 10.20.30.90.21.00.2
Time in familiar zone, hab. session 21.31.33.30.0-1.80.8
Time in novel zone, hab. session 20.90.92.4-0.21.6-0.6
Total zone transitions, hab. session 21.92.45.1-1.32.3-0.7
Total locomotion distance, hab. session 20.70.92.30.11.50.6
Locomotion velocity, hab. session 20.81.12.90.31.70.6
Novel to familiar place preference ratio2.12.33.6-1.21.3-1.9
Novelty place preference1.31.42.2-0.71.2-1.5
Time in novel zone, NPP test0.91.01.5-0.61.0-1.2
Total zone transitions, NPP test2.23.23.5-1.91.9-1.6
Total locomotion distance, NPP test0.50.72.0-0.21.40.2
Locomotion velocity, NPP test0.50.82.3-0.31.5-0.0
Pavlov. Cond. lever latency0.30.40.70.6-0.80.5
Pavlov. Cond. magazine entry latency1.11.43.7-0.41.9-0.6
Pavlov. Cond. change in total contacts0.80.81.7-0.21.3-0.8
Pavlov. Cond. index score0.40.50.7-0.40.9-0.7
Pavlov. Cond. latency score0.30.30.8-0.30.9-0.4
Pavlov. Cond. lever contacts0.10.10.2-0.10.40.0
Pavlov. Cond. magazine entry number0.60.81.30.6-0.91.1
Pavlov. Cond. intertrial magazine entries0.30.30.60.8-0.50.3
Pavlov. Cond. lever-magazine prob. diff.0.60.81.1-0.61.1-0.9
Pavlov. Cond. response bias0.30.30.5-0.30.7-0.7
Bone: apparent density1.11.84.6-0.72.2-0.6
Bone surface4.78.310.5-2.82.6-3.2
Bone volume2.54.35.8-1.52.4-2.2
Bone: connectivity density2.74.26.1-1.92.5-1.7
Bone: cortical apparent density0.20.20.4-0.70.2-0.4
Bone: cortical area0.61.01.9-1.00.3-1.4
Bone: cortical porosity0.30.30.9-0.30.9-0.2
Bone: cortical porosity0.60.70.9-0.91.0-0.6
Bone: cortical thickness1.52.54.5-2.1-0.4-1.7
Bone: cortical thickness0.60.71.5-0.7-1.2-0.0
Bone: cortical tissue density0.20.30.6-0.80.1-0.5
Bone: elastic displacement3.64.07.81.2-2.81.7
Bone: elastic work0.71.02.2-0.9-1.50.0
Bone: endosteal estimation0.51.11.81.30.80.9
Bone: endosteal perimeter0.51.12.31.50.90.5
Bone: final force2.54.15.7-2.41.1-2.3
Bone: final moment2.13.55.0-2.21.0-2.2
Bone: marrow area0.61.22.01.40.81.0
Bone: maximum diameter0.40.82.1-0.50.2-1.4
Bone: maximum force3.76.56.9-2.62.5-2.6
Bone: maximum moment3.05.35.7-2.32.2-2.4
Bone: minimum diameter0.81.52.31.21.50.9
Bone: periosteal estimation0.10.20.40.20.6-0.5
Bone: periosteal perimeter0.20.40.8-0.30.6-0.9
Bone: post-yield work5.67.720.6-0.74.5-1.4
Bone: stiffness3.96.27.6-2.22.7-2.5
Bone: tissue strength0.20.20.3-0.20.5-0.5
Bone: trabecular number1.52.34.8-0.82.2-1.2
Bone: trabecular spacing0.60.71.20.5-0.81.1
Bone: trabecular thickness0.40.50.70.80.70.6
Bone: trabecular tissue density2.63.65.52.3-1.51.7
Breakpoint value in progressive ratio session3.23.64.9-2.11.1-2.2
Distance traveled before self-admin1.01.11.9-0.80.8-1.4
Distance traveled after self-admin0.40.40.8-0.70.4-0.9
Delta time in closed arm before/after self-admin0.70.61.3-0.1-0.81.1
Delta time in open arm before/after self-admin0.60.51.5-0.20.3-1.2
Diff in mean of infusions in LGA sessions0.40.40.7-0.8-0.3-0.8
Extinction: sum of active levers before priming4.84.85.7-2.42.1-2.2
Active lever presses in extinction session 62.82.75.4-1.60.1-2.3
Delta distance traveled before/after self-admin0.20.20.4-0.0-0.60.6
Delta ambulatory time before/after self-admin0.30.30.6-0.1-0.70.6
Time in closed arm before self-admin0.30.40.6-0.10.7-0.8
Time in closed arm after self-admin0.20.20.60.1-0.00.8
Time in open arm before self-admin1.81.94.20.8-1.02.0
Time in open arm after self-admin0.40.40.90.5-0.90.3
Sum of active levers in priming session hrs 5-62.92.86.5-1.4-0.3-2.6
Time to tail flick, vehicle, before self-admin0.70.71.1-0.51.1-0.8
Time to tail flick, vehicle, after self-admin0.70.81.2-1.01.1-0.4
Time to tail flick, test, before self-admin1.31.22.21.00.71.5
Time to tail flick, test, after self-admin0.00.00.1-0.1-0.3-0.2
Delta time to tail flick, vehicle, before/after SA0.20.20.4-0.60.5-0.0
Delta time to tail flick, test, before/after SA2.11.83.0-1.2-1.1-1.7
Ambulatory time before self-admin1.11.22.3-0.70.9-1.5
Ambulatory time after self-admin0.30.30.70.00.8-0.4
Total heroin consumption4.75.68.2-2.91.4-2.6
Area under the delay curve0.30.30.50.30.70.6
Delay disc. indifference point, 0s delay0.80.91.41.00.61.2
Delay disc. indifference point, 16s delay0.70.70.80.90.80.8
Delay disc. indifference point, 2s delay0.10.10.10.40.20.3
Delay disc. indifference point, 24s delay0.30.30.50.3-0.60.7
Delay disc. indifference point, 4s delay0.50.51.20.50.01.1
Delay disc. indifference point, 8s delay0.20.20.60.30.10.8
Delay discount exponential model param0.20.20.3-0.3-0.6-0.5
Delay discount hyperbolic model param0.20.20.3-0.2-0.5-0.5
Fecal boli incidents, locomotor time 10.70.81.6-0.20.8-1.3
Change in fecal boli incidents, locomotor task0.50.51.3-0.0-0.21.2
Time >=10cm from walls, locomotor time 11.01.02.30.81.50.1
Bouts of movement, locomotor time 11.41.62.7-1.40.5-1.6
Total resting periods, locomotor time 11.21.42.3-1.20.7-1.5
Rest time, locomotor task time 11.11.21.71.3-1.10.9
Distance moved, locomotor task time 10.30.41.0-0.31.0-0.0
Vertical activity count, locomotor time 11.11.11.61.2-0.61.3
Time >=10cm from walls, locomotor time 20.40.40.7-0.10.7-0.9
Bouts of movement, locomotor time 20.50.60.7-0.90.6-0.7
Total resting periods, locomotor time 20.40.40.6-0.60.7-0.5
Rest time, locomotor task time 21.82.13.71.9-0.41.6
Distance moved, locomotor task time 20.80.91.5-1.20.2-1.1
Vertical activity count, locomotor time 21.01.13.2-0.0-1.80.5
Weight adjusted by age1.92.13.6-1.60.5-1.9
Seeking ratio, delayed vs. immediate footshock0.20.30.6-0.00.80.5
Locomotion in novel chamber2.53.16.72.6-0.91.4
Locomotion in novel chamber post-restriction1.92.34.12.0-0.61.5
Progressive ratio3.54.17.5-1.62.7-1.5
Food seeking constrained by brief footshock0.20.20.3-0.5-0.50.3
Seeking ratio, punishment vs. effort3.84.67.41.5-2.72.1
Run reversals in cocaine runway, females0.90.91.9-0.61.40.7
Run reversals in cocaine runway, males1.21.23.20.5-1.80.4
Latency to leave start box in cocaine runway0.40.41.30.11.10.2
Latency to leave start box in cocaine runway, F0.30.31.0-0.01.0-0.1
Latency to leave start box in cocaine runway, M0.00.00.1-0.00.20.2
Cd content in liver0.80.91.41.2-1.00.2
Co content in liver2.73.24.51.3-2.11.8
Cu content in liver0.30.40.7-0.50.9-0.5
Fe content in liver0.10.20.4-0.3-0.1-0.6
K content in liver1.91.93.4-1.31.8-0.8
Mg content in liver1.11.23.4-0.21.80.1
Mn content in liver2.73.15.0-1.81.0-2.2
Na content in liver1.11.22.0-1.10.4-1.4
Rb content in liver1.31.62.61.50.11.6
Se content in liver0.50.61.00.10.8-1.0
Sr content in liver3.02.74.4-1.9-0.1-2.1
Zn content in liver1.01.11.5-1.20.8-1.1