ENSRNOG00000049931

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000049931 0.03 0.02 5.7e-03 0.01 0.01 0 0.01 2.2e-02 3.0e-02 1.8e-01 6.1e-02
2 Brain gene expression ENSRNOG00000049931 0.06 0.03 3.7e-04 0.05 0.04 0.04 0.05 3.4e-05 1.1e-04 9.0e-05 2.9e-05
3 NAcc intron excision ratio chr19:23915266:23917300 0.07 0.04 1.8e-03 0.02 0.02 0.01 0.02 5.9e-03 9.1e-03 1.1e-01 1.2e-02
4 PL gene expression ENSRNOG00000049931 0.08 0.04 9.6e-05 0.04 0.05 0.03 0.04 3.1e-04 8.7e-05 3.0e-03 3.7e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail2.16.815.13.9-2.7-0.3-2.2
BMI without tail0.30.60.90.9-0.8-0.6-0.7
Body weight0.00.20.40.2-0.60.60.0
Epididymis fat weight0.30.61.8-0.40.21.40.7
Glucose0.10.20.6-0.8-0.1-0.0-0.1
Heart weight1.72.43.41.8-1.5-1.4-1.4
Left kidney weight0.51.42.0-1.11.01.11.4
Right kidney weight0.30.81.8-0.50.31.31.1
Tail length2.47.415.7-4.02.70.12.6
Length with tail1.76.115.0-3.92.00.82.2
Length without tail0.20.51.7-0.4-0.31.30.0
Liver weight, left1.32.23.8-0.61.52.01.5
Liver weight, right0.91.52.8-0.61.11.71.4
Parametrial fat weight0.30.60.9-0.90.70.70.8
Retroperitoneal fat weight0.41.24.00.0-0.52.00.7
Intraocular pressure2.53.65.51.2-2.3-1.6-2.2
Extensor digitorum longus weight0.10.41.10.1-0.61.1-0.1
Soleus weight0.10.20.60.5-0.20.80.0
Tibialis anterior weight0.20.60.9-0.1-1.0-1.0-0.6
Tibia length0.30.72.4-1.60.5-0.50.1
Number of licking bursts0.40.50.70.50.60.70.9
Food consumed during 24 hour testing period6.57.810.9-1.13.23.03.3
Times rat made contact with spout0.00.00.10.30.20.10.0
Mean time between licks in bursts0.20.30.80.9-0.4-0.6-0.1
Mean num. licks in bursts0.40.51.10.0-0.4-1.0-0.9
Std. dev. time between licks in bursts0.91.02.1-0.61.20.61.4
Water consumed over 24 hours1.21.42.10.21.51.41.3
Indifference point 0 sec0.20.30.4-0.6-0.5-0.70.2
Indifference point AUC1.72.03.0-1.01.71.31.5
Indifference point function ln k2.43.45.01.1-2.0-2.2-1.8
Indifference point function log k2.43.45.01.1-2.0-2.2-1.8
Delay discounting total patch changes 0 sec0.20.30.7-0.3-0.9-0.6-0.2
Delay discounting total patch changes 12 sec1.21.53.0-1.11.10.81.7
Delay discounting total patch changes 18 sec2.53.45.7-0.92.31.32.4
Delay discounting total patch changes 24 sec1.31.62.5-1.41.30.51.6
Delay discounting total patch changes 6 sec0.50.71.1-0.50.90.81.1
Delay discounting time to switch 0 sec0.20.20.40.00.40.60.6
Delay discounting water rate 0 sec0.00.00.1-0.0-0.20.3-0.2
Delay discounting water rate 12 sec1.11.63.11.3-0.5-1.8-1.2
Delay discounting water rate 18 sec1.01.45.20.20.1-2.3-0.5
Delay discounting water rate 24 sec0.91.33.80.2-0.7-2.0-0.8
Delay discounting water rate 6 sec2.02.95.9-0.72.41.02.0
Locomotor activity1.11.83.81.80.11.9-0.0
Locomotor testing distance1.32.24.52.10.32.10.0
Locomotor testing rearing1.82.85.10.51.72.31.8
Light reinforcement 110.419.029.5-3.35.03.45.4
Light reinforcement 210.614.018.3-3.24.13.24.3
Reaction time number correct1.31.92.60.7-1.5-1.6-1.5
Reaction time mean minus median0.60.81.1-0.8-1.1-0.7-1.0
Reaction time mean minus median AUC1.11.42.5-0.3-1.6-0.8-1.5
Reaction time num false alarms1.21.64.01.1-2.0-0.2-1.1
Reaction time num false alarms AUC1.31.83.41.4-1.8-0.7-1.2
Reaction time trials correct on left1.31.92.60.7-1.5-1.6-1.5
Reaction time trials on left1.42.02.60.7-1.6-1.5-1.6
Reaction time mean2.23.06.00.6-2.5-0.9-2.2
Reaction time mean AUC2.33.05.80.8-2.4-0.8-2.2
Median of all reaction times2.53.46.51.1-2.6-0.8-2.3
Reaction time omissions0.81.12.9-0.3-1.70.4-1.1
Reaction time false alarm rate0.30.40.70.8-0.8-0.0-0.4
Reaction time premature initiation rate4.76.410.0-2.43.20.83.0
Reaction time premature initiations1.92.74.1-1.72.00.12.0
Std. dev. reaction times0.70.91.6-0.6-1.3-0.6-1.2
Reaction time trials completed1.42.02.60.7-1.6-1.5-1.6
Reaction time trials AUC1.42.02.80.8-1.7-1.4-1.6
Social response proportion0.50.51.00.3-0.91.0-0.2
Social responses0.50.71.41.2-0.11.10.4
Social time0.20.30.5-0.10.7-0.60.3
Conditioned locomotion0.10.10.2-0.40.30.30.4
Cocaine response after cond. corrected0.40.51.10.6-0.71.0-0.2
Cocaine response after cond. not corrected0.60.71.90.6-0.61.4-0.1
Cocaine response before conditioning0.20.20.5-0.30.70.10.6
Saline control response2.93.97.4-0.61.62.72.3
Condit. Reinf. active minus inactive responses0.10.10.2-0.30.2-0.50.3
Condit. Reinf. active-inactive response ratio0.10.10.1-0.4-0.3-0.1-0.3
Condit. Reinf. active responses0.10.10.10.30.30.20.4
Condit. Reinf. inactive responses0.40.51.31.2-0.10.90.0
Condit. Reinf. lever presses0.10.20.60.8-0.20.1-0.4
Condit. Reinf. lever reinforcers received0.00.10.10.30.20.10.2
Pavlov. Cond. lever latency0.10.20.5-0.7-0.50.0-0.0
Pavlov. Cond. magazine entry latency0.20.20.7-0.90.00.10.2
Pavlov. Cond. change in total contacts0.10.20.50.30.2-0.7-0.2
Pavlov. Cond. index score0.00.00.1-0.00.4-0.2-0.0
Pavlov. Cond. latency score0.00.10.1-0.10.4-0.30.0
Pavlov. Cond. lever contacts0.10.20.40.40.60.30.3
Pavlov. Cond. magazine entry number0.10.20.60.8-0.00.20.1
Pavlov. Cond. intertrial magazine entries1.21.63.2-0.21.50.91.8
Pavlov. Cond. lever-magazine prob. diff.0.00.00.10.10.2-0.3-0.2
Pavlov. Cond. response bias0.00.00.10.20.20.2-0.0
Conditioned reinforcement - actives0.00.00.0-0.2-0.10.0-0.2
Conditioned reinforcement - inactives0.10.10.3-0.3-0.1-0.6-0.4
Conditioned locomotion0.30.40.91.0-0.2-0.5-0.5
Intermittent access intake day 1-15 change2.02.03.6-1.41.90.31.6
Intermittent access intake escalation2.62.64.3-1.62.10.61.7
Intermittent access intake escalation 22.12.03.9-1.42.00.11.5
Intermitt. access day 1 inactive lever presses0.60.62.20.40.1-1.5-0.3
Intermitt. access day 15 inactive lever presses0.20.20.40.6-0.30.3-0.6
Intermitt. access escalation Index0.20.20.20.30.50.40.5
Intermittent access day 1 total infusions1.21.42.01.2-1.4-0.4-1.4
Intermittent access day 15 total infusions0.10.10.2-0.50.2-0.2-0.0
Intermittent access terminal intake (last 3 days)0.10.10.2-0.2-0.0-0.4-0.3
Intermittent access total infusions0.10.20.30.2-0.4-0.3-0.6
Intermittent access day 1 locomotion2.02.04.42.1-1.1-0.8-1.3
Intermittent access day 15 total locomotion0.60.71.01.0-0.70.7-0.8
Intermittent access total locomotion1.31.52.91.7-1.20.4-1.2
Intermittent access standard deviation0.70.82.4-0.50.6-1.5-0.1
Cocaine induced anxiety0.10.20.3-0.5-0.2-0.6-0.3
Post-drug Anxiety0.50.51.00.4-0.9-0.5-1.0
Baseline Anxiety0.50.51.80.1-0.31.30.1
Lifetime Intake0.10.10.2-0.0-0.3-0.3-0.5
Incentive Sensitization - Responses0.20.20.6-0.80.2-0.40.0
Incentive Sensitization - Breakpoint0.20.20.7-0.80.2-0.40.1
Progressive ratio test 1 active lever presses1.31.32.21.0-1.5-0.2-1.4
Progressive ratio test 1 breakpoint1.11.11.80.8-1.4-0.3-1.3
Progressive ratio test 1 inactive lever presses0.20.20.40.0-0.3-0.5-0.6
Progressive ratio test 2 active lever presses0.50.50.90.3-0.9-0.5-1.0
Progressive ratio test 2 breakpoint0.50.50.90.3-1.0-0.2-1.0
Progressive ratio test 2 inactive lever presses1.11.32.50.9-1.3-0.4-1.6
Total sessions with >9 infusions3.53.85.41.4-1.8-2.3-2.2
Short access day 1 total inactive lever presses0.50.61.5-1.20.60.50.3
Short access day 10 total inactive lever presses0.50.61.3-0.31.1-0.60.7
Short access day 1 total infusions2.83.04.80.6-1.8-1.9-2.2
Short access day 10 total infusions0.10.10.20.5-0.00.4-0.2
Short access total infusions0.10.20.3-0.2-0.4-0.3-0.6
Short access day 1 locomotion1.81.93.00.7-1.5-1.3-1.7
Short access day 10 total locomotion2.83.18.12.8-1.2-0.9-1.5
Short access total locomotion3.53.65.72.4-1.5-1.6-1.9
Compulsive drug intake0.90.93.0-0.20.6-1.70.2
One hour access (0.3 mA shock)0.00.00.1-0.1-0.1-0.3-0.2
One hour access (shock baseline)0.50.50.90.6-0.90.7-0.7
Number of responses in last shaping day2.42.43.70.7-1.6-1.7-1.9
Context. condit. distance diff. score0.81.02.70.4-1.6-0.3-1.0
Locomotion velocity, session 10.90.92.1-0.01.50.41.2
Locomotion distance, session 10.60.81.40.60.71.21.0
Locomotion velocity, session 20.60.71.0-0.61.00.61.0
Locomotion distance, session 20.50.71.80.7-0.01.30.6
Locomotion velocity, session 30.20.20.60.3-0.2-0.8-0.4
Locomotion distance, session 30.60.62.0-0.40.4-1.40.4
Stereotopy head waving bouts, day 31.61.94.60.4-0.9-2.2-1.4
Stereotopy head waving duration, day 30.81.01.30.9-0.8-1.1-1.1
Locomotion velocity, session 70.30.30.50.4-0.7-0.6-0.4
Locomotion distance, session 70.20.30.60.20.30.80.6
Stereotopy head waving bouts, day 70.70.82.5-0.70.4-1.60.2
Stereotopy head waving duration, day 70.50.71.6-0.60.7-1.30.4
Locomotion velocity, session 80.30.30.8-0.9-0.00.60.5
Locomotion distance, session 80.20.30.70.5-0.70.80.2
Degree of sensitization distance0.80.83.10.3-0.21.80.1
Degree of sensitization stereotypy0.40.41.5-0.30.0-1.2-0.1
Condit. Reinf. active minus inactive responses1.92.15.2-0.3-1.6-2.3-0.8
Condit. Reinf. active-inactive response ratio0.91.02.6-0.2-1.6-1.0-0.7
Condit. Reinf. active responses1.01.23.9-0.6-0.8-2.0-0.3
Condit. Reinf. inactive responses1.41.63.0-1.31.7-0.21.4
Incentive salience index mean1.21.55.0-1.0-0.2-2.20.1
Condit. Reinf. lever presses1.41.82.7-1.61.2-1.60.8
Time in familiar zone, hab. session 10.30.30.5-0.60.5-0.20.7
Time in novel zone, hab. session 11.51.43.21.8-0.8-0.1-1.4
Total zone transitions, hab. session 10.60.81.8-0.10.91.30.8
Total locomotion distance, hab. session 10.30.50.90.60.61.00.4
Locomotion velocity, hab. session 10.50.71.50.30.81.20.7
Time in familiar zone, hab. session 20.90.91.8-0.61.20.41.3
Time in novel zone, hab. session 22.22.23.51.5-1.90.1-1.8
Total zone transitions, hab. session 20.81.01.50.61.20.91.2
Total locomotion distance, hab. session 20.60.81.50.50.81.20.9
Locomotion velocity, hab. session 20.60.91.60.20.91.31.0
Novel to familiar place preference ratio0.91.02.51.6-0.70.5-0.8
Novelty place preference1.01.12.71.6-0.60.8-0.7
Time in novel zone, NPP test1.41.53.92.0-0.80.4-1.1
Total zone transitions, NPP test1.01.42.6-0.81.11.01.6
Total locomotion distance, NPP test0.20.20.30.20.50.60.6
Locomotion velocity, NPP test0.40.61.0-0.50.50.81.0
Pavlov. Cond. lever latency0.50.61.90.50.21.40.5
Pavlov. Cond. magazine entry latency1.01.21.90.9-0.9-1.3-1.4
Pavlov. Cond. change in total contacts0.50.61.4-0.80.4-1.20.1
Pavlov. Cond. index score0.91.12.70.3-0.7-1.7-1.1
Pavlov. Cond. latency score0.40.61.6-0.1-0.4-1.3-0.7
Pavlov. Cond. lever contacts0.50.61.5-0.4-0.3-1.2-0.7
Pavlov. Cond. magazine entry number1.72.14.2-0.61.12.11.7
Pavlov. Cond. intertrial magazine entries0.70.92.0-1.4-0.1-1.20.4
Pavlov. Cond. lever-magazine prob. diff.1.21.52.90.4-1.0-1.7-1.4
Pavlov. Cond. response bias1.31.73.40.5-0.8-1.8-1.5
Bone: apparent density2.13.48.4-0.72.90.82.1
Bone surface1.73.06.0-1.62.4-0.51.7
Bone volume2.03.47.1-1.72.7-0.21.9
Bone: connectivity density2.94.611.1-1.13.30.42.4
Bone: cortical apparent density0.81.12.21.5-0.7-1.0-0.8
Bone: cortical area0.20.20.6-0.50.20.30.8
Bone: cortical porosity0.30.40.8-0.6-0.90.1-0.6
Bone: cortical porosity0.40.40.9-1.0-0.8-0.3-0.3
Bone: cortical thickness0.71.22.71.2-1.60.0-0.8
Bone: cortical thickness2.83.37.92.2-0.22.80.3
Bone: cortical tissue density0.71.01.91.4-0.6-1.0-0.8
Bone: elastic displacement1.11.31.90.9-1.1-1.4-1.0
Bone: elastic work1.62.03.01.7-1.7-0.6-1.4
Bone: endosteal estimation0.71.62.7-0.71.21.61.4
Bone: endosteal perimeter1.32.75.0-2.21.40.41.9
Bone: final force0.30.51.4-0.50.31.20.6
Bone: final moment0.20.41.2-0.20.21.10.5
Bone: marrow area0.71.62.8-0.61.11.71.3
Bone: maximum diameter0.40.72.1-1.40.1-0.70.6
Bone: maximum force0.10.20.4-0.50.10.60.4
Bone: maximum moment0.10.10.3-0.30.00.60.3
Bone: minimum diameter1.52.74.2-1.41.81.22.0
Bone: periosteal estimation0.91.92.8-0.91.31.51.7
Bone: periosteal perimeter0.81.42.4-1.50.80.21.5
Bone: post-yield work1.01.31.9-0.51.41.31.1
Bone: stiffness0.81.32.3-1.40.51.50.8
Bone: tissue strength0.50.50.8-0.4-0.9-0.8-0.7
Bone: trabecular number2.33.59.4-1.13.1-0.31.8
Bone: trabecular spacing2.02.66.41.0-2.5-0.1-1.7
Bone: trabecular thickness0.60.71.8-0.11.30.70.7
Bone: trabecular tissue density1.01.42.30.9-1.50.7-1.3
Breakpoint value in progressive ratio session2.02.28.30.5-0.32.90.2
Distance traveled before self-admin0.20.20.4-0.1-0.50.1-0.7
Distance traveled after self-admin0.20.20.8-0.1-0.2-0.3-0.9
Delta time in closed arm before/after self-admin1.01.02.00.3-1.4-0.9-1.0
Delta time in open arm before/after self-admin4.24.06.9-1.11.82.62.2
Diff in mean of infusions in LGA sessions0.30.30.80.10.30.90.6
Extinction: sum of active levers before priming3.43.45.32.3-2.0-1.2-1.7
Active lever presses in extinction session 60.70.72.30.2-0.1-1.5-0.6
Delta distance traveled before/after self-admin0.10.10.20.4-0.1-0.4-0.3
Delta ambulatory time before/after self-admin0.20.20.40.10.7-0.50.3
Time in closed arm before self-admin0.40.40.90.20.9-0.80.2
Time in closed arm after self-admin0.20.20.4-0.5-0.4-0.6-0.2
Time in open arm before self-admin0.91.01.80.2-1.3-0.9-1.1
Time in open arm after self-admin0.30.30.60.5-0.40.8-0.1
Sum of active levers in priming session hrs 5-60.40.40.70.10.50.80.8
Time to tail flick, vehicle, before self-admin0.40.40.6-0.50.70.50.7
Time to tail flick, vehicle, after self-admin3.23.44.9-2.10.92.21.9
Time to tail flick, test, before self-admin0.60.61.2-0.2-1.10.1-1.0
Time to tail flick, test, after self-admin0.40.40.8-0.90.30.70.6
Delta time to tail flick, vehicle, before/after SA1.51.53.6-1.90.50.91.1
Delta time to tail flick, test, before/after SA0.00.00.1-0.20.2-0.10.3
Ambulatory time before self-admin0.40.40.80.2-0.80.3-0.9
Ambulatory time after self-admin0.10.10.2-0.40.50.2-0.2
Total heroin consumption0.50.61.31.1-0.31.10.0
Area under the delay curve0.20.20.40.3-0.5-0.6-0.3
Delay disc. indifference point, 0s delay0.40.40.8-0.40.9-0.20.7
Delay disc. indifference point, 16s delay0.70.71.11.0-1.10.5-0.7
Delay disc. indifference point, 2s delay0.60.71.00.5-0.9-0.8-1.0
Delay disc. indifference point, 24s delay0.60.61.5-0.3-1.2-0.7-0.6
Delay disc. indifference point, 4s delay0.30.30.70.20.9-0.60.4
Delay disc. indifference point, 8s delay0.50.60.90.5-1.0-0.9-0.5
Delay discount exponential model param0.20.20.5-0.30.50.70.3
Delay discount hyperbolic model param0.20.20.6-0.30.50.80.3
Fecal boli incidents, locomotor time 13.13.47.3-2.71.70.31.8
Change in fecal boli incidents, locomotor task0.50.51.10.80.4-1.00.1
Time >=10cm from walls, locomotor time 10.20.20.50.10.70.50.3
Bouts of movement, locomotor time 10.30.41.2-0.4-0.1-1.1-0.4
Total resting periods, locomotor time 10.70.82.4-0.3-0.4-1.5-0.7
Rest time, locomotor task time 10.80.92.4-0.5-0.6-1.5-0.8
Distance moved, locomotor task time 10.70.82.01.0-0.11.4-0.0
Vertical activity count, locomotor time 14.54.77.6-1.61.92.82.2
Time >=10cm from walls, locomotor time 20.40.41.00.3-0.80.0-1.0
Bouts of movement, locomotor time 20.70.81.11.1-0.8-0.6-1.0
Total resting periods, locomotor time 20.20.20.30.6-0.4-0.2-0.6
Rest time, locomotor task time 20.40.50.7-0.70.90.30.7
Distance moved, locomotor task time 21.51.82.91.2-1.7-0.1-1.6
Vertical activity count, locomotor time 20.91.02.0-0.90.51.41.0
Weight adjusted by age0.30.41.0-0.1-1.0-0.1-0.6
Seeking ratio, delayed vs. immediate footshock2.12.44.92.2-1.5-0.6-1.4
Locomotion in novel chamber1.21.53.91.3-0.72.00.0
Locomotion in novel chamber post-restriction0.60.72.31.50.5-0.2-0.2
Progressive ratio0.81.01.9-0.40.81.41.1
Food seeking constrained by brief footshock1.82.23.1-1.61.80.51.7
Seeking ratio, punishment vs. effort0.30.40.7-0.80.5-0.90.2
Run reversals in cocaine runway, females1.11.12.2-0.1-1.51.2-0.8
Run reversals in cocaine runway, males0.20.20.50.5-0.2-0.2-0.7
Latency to leave start box in cocaine runway0.50.62.1-0.2-0.31.40.2
Latency to leave start box in cocaine runway, F0.40.40.60.5-0.70.7-0.6
Latency to leave start box in cocaine runway, M2.92.83.7-1.61.21.91.9
Cd content in liver0.20.20.60.0-0.3-0.80.2
Co content in liver2.83.36.60.7-1.8-2.6-1.7
Cu content in liver0.30.30.90.1-0.9-0.3-0.5
Fe content in liver0.91.12.5-1.30.1-1.6-0.4
K content in liver0.50.51.41.2-0.50.0-0.6
Mg content in liver0.90.91.41.2-0.8-0.9-1.0
Mn content in liver0.00.00.1-0.1-0.10.30.2
Na content in liver0.20.20.7-0.10.40.80.2
Rb content in liver0.10.10.2-0.30.2-0.40.1
Se content in liver1.51.85.0-2.20.9-1.00.7
Sr content in liver0.50.40.80.8-0.9-0.1-0.5
Zn content in liver0.30.40.70.8-0.80.3-0.3