Shisa8

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000049407 0.09 0.05 6.9e-11 0.12 0.13 0.12 0.12 6.5e-11 6.3e-12 2.4e-11 2.8e-11
2 Brain mRNA stability ENSRNOG00000049407 0.36 0.1 0.0e+00 0.27 0.32 0.32 0.33 4.9e-25 1.8e-30 1.2e-30 5.2e-31
3 NAcc gene expression ENSRNOG00000049407 0.18 0.08 7.1e-11 0.12 0.13 0.15 0.14 5.3e-09 5.3e-10 4.0e-11 1.3e-10

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.82.65.32.3-0.11.6
BMI without tail0.00.10.10.2-0.30.3
Body weight1.25.37.32.7-1.42.6
Epididymis fat weight3.88.911.53.1-2.33.4
Glucose0.50.71.1-0.70.7-1.0
Heart weight1.21.73.21.80.01.4
Left kidney weight10.129.040.86.4-3.36.0
Right kidney weight10.529.844.46.7-3.06.0
Tail length0.10.30.6-0.8-0.5-0.1
Length with tail0.51.72.11.0-1.41.4
Length without tail0.81.72.81.7-0.71.3
Liver weight, left2.03.24.21.3-2.11.9
Liver weight, right4.27.08.52.3-2.72.9
Parametrial fat weight0.10.20.30.50.50.1
Retroperitoneal fat weight3.110.115.23.9-1.83.4
Intraocular pressure0.30.50.60.7-0.60.8
Extensor digitorum longus weight0.10.30.8-0.9-0.1-0.4
Soleus weight0.20.50.6-0.50.8-0.8
Tibialis anterior weight1.03.33.7-1.71.9-1.9
Tibia length0.61.82.31.5-1.01.4
Number of licking bursts0.30.30.5-0.70.2-0.7
Food consumed during 24 hour testing period0.80.91.91.4-0.00.9
Times rat made contact with spout0.40.40.80.90.30.6
Mean time between licks in bursts0.50.70.8-0.90.7-0.8
Mean num. licks in bursts1.41.62.51.6-0.51.5
Std. dev. time between licks in bursts1.61.92.8-1.31.1-1.7
Water consumed over 24 hours0.60.70.90.9-0.51.0
Indifference point 0 sec0.60.91.3-0.90.8-1.1
Indifference point AUC0.10.10.2-0.30.1-0.4
Indifference point function ln k0.81.21.51.2-0.81.2
Indifference point function log k0.81.21.51.2-0.81.2
Delay discounting total patch changes 0 sec0.71.21.5-1.10.9-1.2
Delay discounting total patch changes 12 sec0.10.10.2-0.10.3-0.5
Delay discounting total patch changes 18 sec0.40.60.8-0.40.9-0.9
Delay discounting total patch changes 24 sec0.20.30.4-0.60.2-0.6
Delay discounting total patch changes 6 sec0.30.50.7-0.60.6-0.8
Delay discounting time to switch 0 sec0.00.00.0-0.1-0.2-0.2
Delay discounting water rate 0 sec0.20.30.4-0.60.6-0.5
Delay discounting water rate 12 sec0.20.30.7-0.8-0.1-0.4
Delay discounting water rate 18 sec1.01.32.5-1.60.1-1.2
Delay discounting water rate 24 sec0.00.00.0-0.10.2-0.1
Delay discounting water rate 6 sec0.40.61.2-1.1-0.7-0.4
Locomotor activity2.23.54.51.8-1.72.1
Locomotor testing distance0.00.00.0-0.1-0.10.0
Locomotor testing rearing1.62.63.61.7-1.11.9
Light reinforcement 10.91.63.10.5-1.81.2
Light reinforcement 20.91.21.51.2-0.91.2
Reaction time number correct0.50.71.4-1.2-0.6-0.5
Reaction time mean minus median0.50.60.90.4-0.91.0
Reaction time mean minus median AUC0.70.91.50.9-0.71.2
Reaction time num false alarms0.81.12.40.1-1.50.9
Reaction time num false alarms AUC0.71.02.4-0.1-1.50.8
Reaction time trials correct on left0.50.71.4-1.2-0.6-0.5
Reaction time trials on left0.50.71.4-1.2-0.7-0.5
Reaction time mean0.10.10.2-0.50.2-0.3
Reaction time mean AUC0.10.10.2-0.40.3-0.4
Median of all reaction times0.40.60.7-0.80.7-0.8
Reaction time omissions0.10.10.3-0.5-0.3-0.1
Reaction time false alarm rate0.40.50.70.5-0.80.8
Reaction time premature initiation rate0.40.60.9-0.60.6-0.9
Reaction time premature initiations0.50.60.9-0.90.4-1.0
Std. dev. reaction times0.60.81.20.7-0.91.1
Reaction time trials completed0.50.71.4-1.2-0.7-0.5
Reaction time trials AUC0.40.61.1-1.0-0.7-0.4
Social response proportion0.20.20.50.00.7-0.2
Social responses0.10.20.4-0.1-0.60.3
Social time2.02.73.3-1.61.5-1.8
Conditioned locomotion1.31.52.01.1-1.21.4
Cocaine response after cond. corrected0.10.10.20.2-0.50.3
Cocaine response after cond. not corrected0.20.20.50.1-0.70.4
Cocaine response before conditioning0.00.00.1-0.2-0.1-0.1
Saline control response1.31.73.20.3-1.81.3
Condit. Reinf. active minus inactive responses0.30.40.80.00.9-0.6
Condit. Reinf. active-inactive response ratio0.60.61.20.11.1-0.8
Condit. Reinf. active responses0.30.40.70.9-0.20.6
Condit. Reinf. inactive responses1.31.72.11.3-1.01.5
Condit. Reinf. lever presses0.40.60.8-0.60.8-0.9
Condit. Reinf. lever reinforcers received0.10.10.30.60.10.2
Pavlov. Cond. lever latency1.01.41.91.3-0.71.4
Pavlov. Cond. magazine entry latency6.87.99.9-2.52.7-3.1
Pavlov. Cond. change in total contacts1.92.63.5-1.01.9-1.8
Pavlov. Cond. index score3.95.16.7-2.12.1-2.6
Pavlov. Cond. latency score5.06.38.1-2.22.4-2.8
Pavlov. Cond. lever contacts1.11.62.3-1.30.9-1.5
Pavlov. Cond. magazine entry number4.15.16.51.8-2.32.6
Pavlov. Cond. intertrial magazine entries1.72.24.42.10.11.5
Pavlov. Cond. lever-magazine prob. diff.3.84.96.5-2.12.0-2.6
Pavlov. Cond. response bias1.82.53.5-1.41.4-1.9
Conditioned reinforcement - actives0.50.50.70.9-0.50.7
Conditioned reinforcement - inactives0.40.41.3-0.11.1-0.2
Conditioned locomotion1.31.53.21.8-0.31.2
Intermittent access intake day 1-15 change0.30.30.4-0.60.6-0.4
Intermittent access intake escalation0.30.30.5-0.70.6-0.4
Intermittent access intake escalation 20.10.10.2-0.4-0.00.1
Intermitt. access day 1 inactive lever presses0.30.30.80.40.9-0.0
Intermitt. access day 15 inactive lever presses1.11.22.80.81.7-0.6
Intermitt. access escalation Index0.30.20.5-0.10.7-0.5
Intermittent access day 1 total infusions0.50.61.31.20.00.7
Intermittent access day 15 total infusions0.20.20.60.00.8-0.1
Intermittent access terminal intake (last 3 days)0.10.10.20.30.00.4
Intermittent access total infusions0.20.20.30.60.30.4
Intermittent access day 1 locomotion0.20.20.50.70.40.1
Intermittent access day 15 total locomotion0.00.00.10.30.10.1
Intermittent access total locomotion0.20.20.50.70.50.0
Intermittent access standard deviation0.40.40.60.80.60.5
Cocaine induced anxiety0.50.61.00.61.0-0.6
Post-drug Anxiety0.20.20.40.20.5-0.6
Baseline Anxiety0.40.41.0-1.0-0.4-0.2
Lifetime Intake0.50.61.01.00.80.3
Incentive Sensitization - Responses0.80.81.8-0.51.4-0.6
Incentive Sensitization - Breakpoint0.80.82.0-0.31.4-0.6
Progressive ratio test 1 active lever presses0.50.51.00.71.00.1
Progressive ratio test 1 breakpoint0.30.30.60.60.80.1
Progressive ratio test 1 inactive lever presses1.21.33.60.51.9-0.2
Progressive ratio test 2 active lever presses0.80.92.1-0.01.4-0.7
Progressive ratio test 2 breakpoint0.80.92.30.11.5-0.6
Progressive ratio test 2 inactive lever presses2.12.55.1-0.62.3-1.4
Total sessions with >9 infusions1.01.12.41.60.30.9
Short access day 1 total inactive lever presses0.50.61.51.2-0.00.5
Short access day 10 total inactive lever presses0.40.50.60.8-0.70.6
Short access day 1 total infusions1.11.22.51.60.30.9
Short access day 10 total infusions0.40.50.80.90.70.2
Short access total infusions1.41.53.11.81.00.5
Short access day 1 locomotion0.40.40.70.50.9-0.4
Short access day 10 total locomotion0.30.30.60.20.8-0.6
Short access total locomotion0.80.81.81.30.90.1
Compulsive drug intake1.51.52.6-1.60.6-1.3
One hour access (0.3 mA shock)0.30.40.6-0.50.8-0.6
One hour access (shock baseline)0.10.10.20.40.30.3
Number of responses in last shaping day2.42.54.4-0.82.1-1.5
Context. condit. distance diff. score6.98.410.93.1-2.23.3
Locomotion velocity, session 10.90.92.30.2-1.50.7
Locomotion distance, session 11.11.42.8-1.70.0-1.2
Locomotion velocity, session 20.60.71.00.7-1.00.8
Locomotion distance, session 23.04.35.8-2.01.9-2.4
Locomotion velocity, session 31.11.22.30.6-1.51.0
Locomotion distance, session 30.40.40.9-1.0-0.4-0.5
Stereotopy head waving bouts, day 30.91.11.11.0-1.01.1
Stereotopy head waving duration, day 34.35.36.12.2-2.22.5
Locomotion velocity, session 70.20.20.30.5-0.50.4
Locomotion distance, session 70.70.91.8-0.11.4-0.9
Stereotopy head waving bouts, day 76.57.410.91.8-3.32.8
Stereotopy head waving duration, day 74.85.98.71.6-2.92.6
Locomotion velocity, session 82.22.63.51.7-1.21.9
Locomotion distance, session 81.11.62.11.3-1.11.4
Degree of sensitization distance1.21.22.41.51.00.5
Degree of sensitization stereotypy4.95.38.21.4-2.92.4
Condit. Reinf. active minus inactive responses0.50.60.9-0.30.9-0.9
Condit. Reinf. active-inactive response ratio0.20.20.40.6-0.30.4
Condit. Reinf. active responses1.82.23.1-1.21.4-1.7
Condit. Reinf. inactive responses2.83.34.3-1.91.5-2.1
Incentive salience index mean1.21.52.0-0.61.4-1.4
Condit. Reinf. lever presses1.01.42.1-0.81.2-1.5
Time in familiar zone, hab. session 10.20.20.20.3-0.40.5
Time in novel zone, hab. session 10.80.81.10.6-0.91.1
Total zone transitions, hab. session 11.62.34.4-2.10.2-1.6
Total locomotion distance, hab. session 10.91.32.1-1.3-1.5-0.3
Locomotion velocity, hab. session 10.81.22.3-1.5-0.9-0.8
Time in familiar zone, hab. session 20.80.81.60.2-1.30.9
Time in novel zone, hab. session 20.20.20.40.00.7-0.3
Total zone transitions, hab. session 20.50.60.8-0.90.6-0.9
Total locomotion distance, hab. session 20.40.60.8-0.90.4-0.9
Locomotion velocity, hab. session 20.81.11.6-1.30.5-1.2
Novel to familiar place preference ratio3.63.85.41.5-2.02.3
Novelty place preference5.05.27.31.8-2.22.7
Time in novel zone, NPP test5.96.28.72.0-2.43.0
Total zone transitions, NPP test1.31.83.5-1.90.2-1.4
Total locomotion distance, NPP test0.81.11.8-1.40.3-1.2
Locomotion velocity, NPP test1.31.83.0-1.70.4-1.5
Pavlov. Cond. lever latency1.31.72.61.1-1.11.6
Pavlov. Cond. magazine entry latency1.92.53.5-1.01.9-1.7
Pavlov. Cond. change in total contacts2.83.04.1-1.12.0-1.9
Pavlov. Cond. index score1.62.03.4-0.61.9-1.5
Pavlov. Cond. latency score1.31.72.8-0.61.7-1.4
Pavlov. Cond. lever contacts2.12.53.5-1.21.7-1.9
Pavlov. Cond. magazine entry number1.61.93.10.7-1.81.5
Pavlov. Cond. intertrial magazine entries1.11.31.6-1.30.8-1.3
Pavlov. Cond. lever-magazine prob. diff.1.82.23.4-0.71.9-1.6
Pavlov. Cond. response bias2.22.74.0-0.92.0-1.8
Bone: apparent density0.30.50.8-0.80.4-0.9
Bone surface0.20.41.1-0.4-1.10.1
Bone volume0.10.20.5-0.1-0.70.1
Bone: connectivity density0.20.30.4-0.50.3-0.6
Bone: cortical apparent density0.60.81.2-0.90.7-1.1
Bone: cortical area1.42.12.61.6-1.11.6
Bone: cortical porosity0.60.70.70.8-0.80.8
Bone: cortical porosity1.41.51.71.2-1.11.3
Bone: cortical thickness0.40.71.60.41.3-0.4
Bone: cortical thickness0.50.61.50.51.2-0.1
Bone: cortical tissue density0.60.81.2-0.80.7-1.1
Bone: elastic displacement0.91.12.20.2-1.51.0
Bone: elastic work1.92.43.11.6-1.31.8
Bone: endosteal estimation3.27.011.51.5-3.42.7
Bone: endosteal perimeter4.910.114.12.2-3.83.4
Bone: final force0.60.92.11.40.30.7
Bone: final moment0.71.12.41.50.10.9
Bone: marrow area3.47.311.91.5-3.42.8
Bone: maximum diameter4.88.811.03.0-2.63.3
Bone: maximum force1.42.44.72.2-0.31.6
Bone: maximum moment1.62.95.22.3-0.51.8
Bone: minimum diameter1.52.84.01.2-2.01.7
Bone: periosteal estimation3.26.68.51.9-2.92.7
Bone: periosteal perimeter5.99.711.52.7-3.23.4
Bone: post-yield work0.10.20.30.60.40.1
Bone: stiffness0.81.22.61.6-0.11.0
Bone: tissue strength0.10.10.10.3-0.40.3
Bone: trabecular number0.10.10.40.1-0.60.3
Bone: trabecular spacing0.50.71.51.20.20.7
Bone: trabecular thickness0.10.10.2-0.50.0-0.4
Bone: trabecular tissue density1.82.52.9-1.71.3-1.7
Breakpoint value in progressive ratio session0.30.40.5-0.30.7-0.7
Distance traveled before self-admin1.71.84.00.02.0-1.2
Distance traveled after self-admin0.20.20.50.20.7-0.4
Delta time in closed arm before/after self-admin0.90.92.21.50.20.7
Delta time in open arm before/after self-admin0.30.30.5-0.6-0.7-0.1
Diff in mean of infusions in LGA sessions0.80.91.3-0.71.1-1.1
Extinction: sum of active levers before priming0.10.10.2-0.00.4-0.3
Active lever presses in extinction session 60.10.10.10.30.2-0.2
Delta distance traveled before/after self-admin1.92.03.50.7-1.91.4
Delta ambulatory time before/after self-admin2.02.23.80.7-2.01.5
Time in closed arm before self-admin4.95.67.9-2.81.5-2.6
Time in closed arm after self-admin0.30.30.70.8-0.10.5
Time in open arm before self-admin0.40.50.70.3-0.80.8
Time in open arm after self-admin0.40.51.0-0.6-1.00.2
Sum of active levers in priming session hrs 5-60.10.10.1-0.30.2-0.4
Time to tail flick, vehicle, before self-admin0.50.51.10.1-1.10.7
Time to tail flick, vehicle, after self-admin1.11.22.5-1.0-1.60.2
Time to tail flick, test, before self-admin0.80.81.50.4-1.20.8
Time to tail flick, test, after self-admin0.60.61.2-1.10.2-0.7
Delta time to tail flick, vehicle, before/after SA0.30.20.3-0.40.4-0.6
Delta time to tail flick, test, before/after SA2.01.82.8-1.70.8-1.3
Ambulatory time before self-admin0.91.02.40.01.6-0.7
Ambulatory time after self-admin0.30.30.5-0.60.3-0.7
Total heroin consumption0.10.10.30.10.6-0.3
Area under the delay curve0.30.30.6-0.20.8-0.6
Delay disc. indifference point, 0s delay0.60.61.31.1-0.10.8
Delay disc. indifference point, 16s delay1.51.61.9-1.31.0-1.4
Delay disc. indifference point, 2s delay0.20.20.30.60.50.1
Delay disc. indifference point, 24s delay0.10.10.2-0.2-0.5-0.0
Delay disc. indifference point, 4s delay0.50.51.20.11.1-0.6
Delay disc. indifference point, 8s delay0.90.91.1-0.81.0-1.0
Delay discount exponential model param0.30.30.50.3-0.70.6
Delay discount hyperbolic model param0.20.20.50.1-0.70.4
Fecal boli incidents, locomotor time 10.30.30.4-0.70.5-0.6
Change in fecal boli incidents, locomotor task1.41.31.70.8-1.31.3
Time >=10cm from walls, locomotor time 10.00.00.00.2-0.10.0
Bouts of movement, locomotor time 10.10.10.20.40.3-0.1
Total resting periods, locomotor time 10.40.40.90.10.9-0.6
Rest time, locomotor task time 10.80.92.30.51.5-0.4
Distance moved, locomotor task time 11.31.51.90.9-1.41.3
Vertical activity count, locomotor time 10.10.10.2-0.0-0.40.2
Time >=10cm from walls, locomotor time 20.00.00.1-0.2-0.2-0.1
Bouts of movement, locomotor time 20.60.61.40.51.2-0.4
Total resting periods, locomotor time 20.70.81.90.41.4-0.5
Rest time, locomotor task time 20.40.50.7-0.30.9-0.7
Distance moved, locomotor task time 21.41.72.11.2-1.21.5
Vertical activity count, locomotor time 20.80.81.10.7-0.91.1
Weight adjusted by age0.91.01.90.1-1.41.0
Seeking ratio, delayed vs. immediate footshock4.45.06.8-2.21.9-2.6
Locomotion in novel chamber1.31.63.5-0.5-1.91.1
Locomotion in novel chamber post-restriction0.50.61.0-1.00.3-0.8
Progressive ratio0.30.40.5-0.50.7-0.7
Food seeking constrained by brief footshock1.21.52.71.6-0.51.2
Seeking ratio, punishment vs. effort0.60.81.41.2-0.40.9
Run reversals in cocaine runway, females0.50.51.1-0.5-1.10.1
Run reversals in cocaine runway, males1.41.42.10.8-1.41.2
Latency to leave start box in cocaine runway0.10.10.20.4-0.10.4
Latency to leave start box in cocaine runway, F0.10.10.3-0.6-0.0-0.3
Latency to leave start box in cocaine runway, M1.01.02.01.40.20.9
Cd content in liver1.41.52.41.1-1.01.6
Co content in liver0.20.30.40.60.20.6
Cu content in liver3.34.05.5-2.41.1-2.3
Fe content in liver0.50.51.20.1-1.10.6
K content in liver1.01.01.3-0.81.0-1.2
Mg content in liver2.22.33.2-1.21.6-1.8
Mn content in liver0.50.60.80.6-0.80.9
Na content in liver2.72.93.7-1.91.1-1.9
Rb content in liver0.00.10.1-0.00.3-0.2
Se content in liver0.30.40.8-0.9-0.2-0.6
Sr content in liver0.80.70.9-0.90.7-0.8
Zn content in liver0.60.71.5-1.2-0.1-0.8