Card14

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain intron excision ratio chr10:104589940:104590111 0.03 0.02 9.0e-03 0.01 0.02 0.01 0.01 7.8e-02 3.3e-03 2.1e-02 1.9e-02
2 Brain mRNA stability ENSRNOG00000047367 0.05 0.03 5.5e-05 0.04 0.05 0.04 0.04 2.8e-04 2.4e-05 1.3e-04 5.5e-05
3 Eye intron excision ratio chr10:104582228:104584014 0.33 0.17 4.4e-03 0 0.05 -0.01 0.03 3.0e-01 5.6e-02 4.9e-01 1.3e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.10.20.50.30.7-0.3
BMI without tail0.91.93.11.01.8-1.2
Body weight4.318.320.74.04.5-4.2
Epididymis fat weight0.71.72.21.11.5-1.2
Glucose1.82.83.7-1.4-1.91.6
Heart weight0.10.20.20.40.4-0.5
Left kidney weight1.44.04.12.02.0-2.0
Right kidney weight0.92.72.81.61.7-1.6
Tail length5.215.717.33.84.2-4.0
Length with tail5.419.920.34.44.5-4.5
Length without tail1.53.33.71.91.7-1.9
Liver weight, left0.30.50.60.70.6-0.7
Liver weight, right5.08.28.62.92.8-2.9
Parametrial fat weight1.42.72.91.61.6-1.7
Retroperitoneal fat weight4.214.016.43.54.0-3.7
Intraocular pressure0.00.00.0-0.2-0.10.2
Extensor digitorum longus weight0.31.41.8-1.3-1.01.2
Soleus weight1.03.03.21.81.6-1.8
Tibialis anterior weight0.10.30.4-0.6-0.60.5
Tibia length16.947.749.66.87.0-6.9
Number of licking bursts0.20.30.30.50.6-0.5
Food consumed during 24 hour testing period0.40.50.80.60.9-0.6
Times rat made contact with spout1.01.11.31.11.0-1.1
Mean time between licks in bursts0.91.21.3-1.1-1.11.1
Mean num. licks in bursts0.00.00.00.1-0.1-0.1
Std. dev. time between licks in bursts0.00.00.0-0.20.20.1
Water consumed over 24 hours0.00.10.10.30.1-0.3
Indifference point 0 sec0.00.10.1-0.2-0.20.2
Indifference point AUC0.00.00.0-0.2-0.10.1
Indifference point function ln k1.62.22.3-1.5-1.51.5
Indifference point function log k1.62.22.3-1.5-1.51.5
Delay discounting total patch changes 0 sec0.10.20.2-0.5-0.40.4
Delay discounting total patch changes 12 sec0.10.10.1-0.3-0.30.3
Delay discounting total patch changes 18 sec0.70.91.1-1.1-0.71.0
Delay discounting total patch changes 24 sec0.60.81.00.81.0-0.9
Delay discounting total patch changes 6 sec0.10.20.30.50.3-0.5
Delay discounting time to switch 0 sec0.20.30.3-0.5-0.60.5
Delay discounting water rate 0 sec1.21.92.71.21.6-1.3
Delay discounting water rate 12 sec0.40.60.8-0.9-0.50.8
Delay discounting water rate 18 sec0.10.10.20.10.4-0.2
Delay discounting water rate 24 sec0.10.10.3-0.10.6-0.0
Delay discounting water rate 6 sec0.00.00.0-0.20.10.1
Locomotor activity0.40.70.7-0.8-0.80.8
Locomotor testing distance0.30.60.7-0.8-0.70.8
Locomotor testing rearing0.20.30.4-0.6-0.30.6
Light reinforcement 10.20.40.60.60.7-0.6
Light reinforcement 22.02.62.71.61.7-1.6
Reaction time number correct1.01.42.1-1.5-0.81.2
Reaction time mean minus median0.00.00.10.30.0-0.2
Reaction time mean minus median AUC0.70.91.01.00.9-1.0
Reaction time num false alarms0.30.40.4-0.6-0.70.7
Reaction time num false alarms AUC0.60.90.9-0.9-0.90.9
Reaction time trials correct on left1.01.42.1-1.5-0.81.2
Reaction time trials on left1.01.42.1-1.4-0.71.2
Reaction time mean0.00.00.10.10.3-0.2
Reaction time mean AUC0.00.00.0-0.00.2-0.0
Median of all reaction times0.00.00.1-0.00.3-0.0
Reaction time omissions0.40.50.70.60.8-0.7
Reaction time false alarm rate0.10.10.3-0.2-0.50.3
Reaction time premature initiation rate2.33.13.5-1.7-1.91.8
Reaction time premature initiations3.54.95.4-2.3-2.12.3
Std. dev. reaction times0.30.40.5-0.7-0.60.7
Reaction time trials completed1.01.42.1-1.4-0.71.2
Reaction time trials AUC1.01.42.1-1.4-0.71.2
Social response proportion0.20.20.2-0.5-0.30.5
Social responses0.00.00.10.10.3-0.1
Social time0.20.30.3-0.6-0.50.6
Conditioned locomotion1.82.12.71.31.6-1.4
Cocaine response after cond. corrected0.10.10.1-0.3-0.20.2
Cocaine response after cond. not corrected0.30.40.4-0.6-0.60.6
Cocaine response before conditioning0.40.50.6-0.7-0.70.7
Saline control response2.93.84.01.92.0-2.0
Condit. Reinf. active minus inactive responses1.62.02.51.41.6-1.3
Condit. Reinf. active-inactive response ratio3.53.73.71.91.9-1.9
Condit. Reinf. active responses0.10.10.30.20.5-0.2
Condit. Reinf. inactive responses1.31.61.7-1.3-1.11.3
Condit. Reinf. lever presses0.10.20.3-0.5-0.20.5
Condit. Reinf. lever reinforcers received0.00.00.0-0.20.20.2
Pavlov. Cond. lever latency0.00.10.10.3-0.0-0.2
Pavlov. Cond. magazine entry latency3.54.04.6-2.2-1.82.1
Pavlov. Cond. change in total contacts1.31.82.2-1.5-1.11.4
Pavlov. Cond. index score1.11.41.8-1.3-0.91.2
Pavlov. Cond. latency score0.91.11.4-1.2-0.81.1
Pavlov. Cond. lever contacts0.00.00.1-0.10.30.0
Pavlov. Cond. magazine entry number3.23.94.52.11.7-2.0
Pavlov. Cond. intertrial magazine entries2.12.72.91.61.7-1.6
Pavlov. Cond. lever-magazine prob. diff.1.51.92.4-1.5-1.11.4
Pavlov. Cond. response bias0.50.60.9-0.9-0.50.8
Conditioned reinforcement - actives0.00.00.00.20.1-0.2
Conditioned reinforcement - inactives1.51.71.81.31.3-1.3
Conditioned locomotion0.30.40.40.70.5-0.7
Intermittent access intake day 1-15 change0.20.20.30.40.5-0.5
Intermittent access intake escalation0.30.30.30.50.6-0.5
Intermittent access intake escalation 21.01.01.01.01.0-1.0
Intermitt. access day 1 inactive lever presses2.22.42.71.51.6-1.5
Intermitt. access day 15 inactive lever presses0.60.70.90.70.9-0.8
Intermitt. access escalation Index1.41.21.41.11.2-1.1
Intermittent access day 1 total infusions0.00.00.10.20.2-0.2
Intermittent access day 15 total infusions0.40.50.50.70.7-0.7
Intermittent access terminal intake (last 3 days)0.91.01.11.01.0-1.0
Intermittent access total infusions0.30.30.30.50.5-0.6
Intermittent access day 1 locomotion0.20.20.30.50.4-0.5
Intermittent access day 15 total locomotion0.60.60.70.80.7-0.8
Intermittent access total locomotion0.40.40.50.70.6-0.7
Intermittent access standard deviation0.10.10.20.30.4-0.3
Cocaine induced anxiety6.17.07.62.62.8-2.6
Post-drug Anxiety0.91.01.50.81.2-0.9
Baseline Anxiety6.56.97.1-2.6-2.62.7
Lifetime Intake0.10.10.10.30.3-0.3
Incentive Sensitization - Responses0.10.10.10.30.3-0.3
Incentive Sensitization - Breakpoint0.10.10.10.40.3-0.4
Progressive ratio test 1 active lever presses0.30.30.30.60.5-0.6
Progressive ratio test 1 breakpoint0.30.30.30.50.5-0.6
Progressive ratio test 1 inactive lever presses2.72.83.31.61.8-1.7
Progressive ratio test 2 active lever presses0.30.30.30.60.5-0.6
Progressive ratio test 2 breakpoint0.30.30.30.60.6-0.6
Progressive ratio test 2 inactive lever presses0.70.80.80.90.9-0.9
Total sessions with >9 infusions0.20.20.2-0.4-0.50.4
Short access day 1 total inactive lever presses0.40.40.40.70.6-0.7
Short access day 10 total inactive lever presses4.04.44.92.02.2-2.1
Short access day 1 total infusions0.70.80.8-0.8-0.90.9
Short access day 10 total infusions0.50.50.60.70.7-0.8
Short access total infusions0.00.00.1-0.2-0.20.2
Short access day 1 locomotion0.00.00.00.1-0.1-0.1
Short access day 10 total locomotion0.00.00.10.20.0-0.2
Short access total locomotion0.00.00.1-0.0-0.30.1
Compulsive drug intake0.10.10.20.20.4-0.3
One hour access (0.3 mA shock)0.20.30.40.50.6-0.5
One hour access (shock baseline)0.20.30.30.60.4-0.6
Number of responses in last shaping day2.62.72.81.71.6-1.7
Context. condit. distance diff. score0.10.10.1-0.30.20.2
Locomotion velocity, session 10.50.50.8-0.6-0.90.7
Locomotion distance, session 12.83.63.7-1.9-1.91.9
Locomotion velocity, session 23.64.35.2-1.9-2.32.0
Locomotion distance, session 21.31.81.9-1.3-1.41.4
Locomotion velocity, session 30.50.50.7-0.6-0.80.7
Locomotion distance, session 33.03.33.5-1.8-1.91.8
Stereotopy head waving bouts, day 30.00.00.0-0.1-0.20.1
Stereotopy head waving duration, day 30.00.00.0-0.1-0.00.1
Locomotion velocity, session 70.70.70.8-0.9-0.80.9
Locomotion distance, session 75.57.17.7-2.8-2.52.7
Stereotopy head waving bouts, day 70.50.50.80.60.9-0.7
Stereotopy head waving duration, day 71.72.12.41.41.5-1.4
Locomotion velocity, session 80.20.30.4-0.6-0.10.6
Locomotion distance, session 80.81.21.7-1.3-0.81.2
Degree of sensitization distance0.00.00.1-0.30.00.2
Degree of sensitization stereotypy0.60.60.90.71.0-0.7
Condit. Reinf. active minus inactive responses1.11.31.41.11.2-1.1
Condit. Reinf. active-inactive response ratio0.30.30.40.50.7-0.5
Condit. Reinf. active responses2.22.72.71.61.6-1.6
Condit. Reinf. inactive responses0.50.60.60.80.7-0.8
Incentive salience index mean1.21.51.51.21.2-1.2
Condit. Reinf. lever presses0.00.00.00.00.0-0.0
Time in familiar zone, hab. session 10.40.40.4-0.6-0.60.6
Time in novel zone, hab. session 10.20.20.30.40.6-0.4
Total zone transitions, hab. session 10.91.21.4-1.2-1.01.1
Total locomotion distance, hab. session 10.10.10.1-0.4-0.10.3
Locomotion velocity, hab. session 10.00.10.1-0.3-0.10.3
Time in familiar zone, hab. session 20.60.60.7-0.9-0.70.8
Time in novel zone, hab. session 20.00.00.00.10.1-0.1
Total zone transitions, hab. session 21.72.22.4-1.5-1.41.5
Total locomotion distance, hab. session 20.20.30.3-0.6-0.40.6
Locomotion velocity, hab. session 20.00.10.1-0.3-0.20.3
Novel to familiar place preference ratio0.40.40.50.70.6-0.6
Novelty place preference0.40.50.50.70.6-0.7
Time in novel zone, NPP test0.20.20.20.50.4-0.5
Total zone transitions, NPP test1.42.02.2-1.5-1.31.5
Total locomotion distance, NPP test0.91.21.4-1.2-1.01.2
Locomotion velocity, NPP test0.50.70.8-0.9-0.70.9
Pavlov. Cond. lever latency2.83.64.4-2.1-1.52.0
Pavlov. Cond. magazine entry latency4.45.76.02.42.3-2.4
Pavlov. Cond. change in total contacts0.10.10.20.50.2-0.4
Pavlov. Cond. index score5.87.47.82.82.6-2.8
Pavlov. Cond. latency score5.46.97.62.72.4-2.7
Pavlov. Cond. lever contacts1.72.12.51.61.2-1.5
Pavlov. Cond. magazine entry number3.94.95.2-2.3-2.12.3
Pavlov. Cond. intertrial magazine entries0.30.40.4-0.7-0.60.6
Pavlov. Cond. lever-magazine prob. diff.5.56.97.32.72.5-2.7
Pavlov. Cond. response bias3.74.54.92.21.9-2.2
Bone: apparent density0.10.10.1-0.3-0.40.3
Bone surface0.20.40.50.70.6-0.7
Bone volume0.00.00.00.20.2-0.2
Bone: connectivity density0.20.30.4-0.6-0.60.6
Bone: cortical apparent density3.34.34.9-2.0-2.22.1
Bone: cortical area7.711.711.73.43.4-3.4
Bone: cortical porosity1.61.82.01.41.1-1.4
Bone: cortical porosity1.92.02.21.51.3-1.5
Bone: cortical thickness6.010.010.63.33.0-3.2
Bone: cortical thickness2.12.42.51.61.6-1.5
Bone: cortical tissue density3.85.05.6-2.1-2.42.2
Bone: elastic displacement0.80.91.01.00.9-0.9
Bone: elastic work6.58.59.03.02.8-3.0
Bone: endosteal estimation0.10.10.2-0.5-0.20.4
Bone: endosteal perimeter1.32.62.61.61.6-1.6
Bone: final force5.99.710.33.13.2-3.1
Bone: final moment6.510.811.33.23.4-3.3
Bone: marrow area0.10.10.2-0.5-0.20.4
Bone: maximum diameter3.66.77.02.52.6-2.6
Bone: maximum force5.29.19.43.03.1-3.0
Bone: maximum moment5.79.910.23.13.2-3.2
Bone: minimum diameter3.97.27.52.62.7-2.7
Bone: periosteal estimation2.04.14.61.92.1-2.0
Bone: periosteal perimeter6.010.010.43.23.0-3.2
Bone: post-yield work0.20.20.3-0.5-0.50.5
Bone: stiffness1.11.71.81.31.3-1.3
Bone: tissue strength0.30.30.40.50.6-0.6
Bone: trabecular number0.10.10.1-0.2-0.40.3
Bone: trabecular spacing0.10.10.4-0.20.60.0
Bone: trabecular thickness0.10.20.30.60.0-0.5
Bone: trabecular tissue density0.10.20.2-0.4-0.40.4
Breakpoint value in progressive ratio session0.10.10.10.20.3-0.3
Distance traveled before self-admin1.81.92.11.31.5-1.3
Distance traveled after self-admin0.10.10.1-0.4-0.20.3
Delta time in closed arm before/after self-admin0.70.70.70.90.8-0.8
Delta time in open arm before/after self-admin0.00.00.0-0.2-0.00.2
Diff in mean of infusions in LGA sessions0.00.00.0-0.00.10.0
Extinction: sum of active levers before priming1.61.61.6-1.2-1.31.3
Active lever presses in extinction session 60.10.10.20.30.4-0.3
Delta distance traveled before/after self-admin1.41.51.6-1.3-1.11.2
Delta ambulatory time before/after self-admin2.42.72.8-1.7-1.61.6
Time in closed arm before self-admin0.40.40.5-0.6-0.70.6
Time in closed arm after self-admin0.00.00.1-0.1-0.20.1
Time in open arm before self-admin0.20.20.20.40.3-0.4
Time in open arm after self-admin0.10.10.1-0.3-0.20.3
Sum of active levers in priming session hrs 5-60.00.00.0-0.10.10.0
Time to tail flick, vehicle, before self-admin0.00.00.10.30.2-0.2
Time to tail flick, vehicle, after self-admin0.80.91.1-0.8-1.10.9
Time to tail flick, test, before self-admin0.00.00.00.10.1-0.1
Time to tail flick, test, after self-admin0.20.20.30.30.5-0.3
Delta time to tail flick, vehicle, before/after SA0.20.20.3-0.5-0.40.5
Delta time to tail flick, test, before/after SA0.00.00.1-0.2-0.10.2
Ambulatory time before self-admin3.43.64.11.82.0-1.8
Ambulatory time after self-admin0.00.00.10.00.3-0.1
Total heroin consumption0.30.40.50.60.7-0.6
Area under the delay curve0.10.10.1-0.3-0.20.4
Delay disc. indifference point, 0s delay0.50.50.70.70.8-0.7
Delay disc. indifference point, 16s delay1.41.41.7-1.3-1.01.3
Delay disc. indifference point, 2s delay0.30.30.40.50.6-0.5
Delay disc. indifference point, 24s delay2.32.32.5-1.4-1.61.5
Delay disc. indifference point, 4s delay0.20.30.50.40.7-0.4
Delay disc. indifference point, 8s delay0.10.10.10.30.3-0.2
Delay discount exponential model param0.20.20.20.40.3-0.5
Delay discount hyperbolic model param0.10.10.20.40.2-0.4
Fecal boli incidents, locomotor time 11.31.41.6-1.1-1.31.1
Change in fecal boli incidents, locomotor task2.62.52.8-1.5-1.71.5
Time >=10cm from walls, locomotor time 10.20.20.3-0.6-0.30.5
Bouts of movement, locomotor time 12.32.52.8-1.5-1.71.6
Total resting periods, locomotor time 12.73.13.6-1.6-1.91.7
Rest time, locomotor task time 10.10.10.2-0.2-0.50.2
Distance moved, locomotor task time 10.70.81.10.81.0-0.9
Vertical activity count, locomotor time 10.20.20.30.30.6-0.4
Time >=10cm from walls, locomotor time 20.00.00.00.20.2-0.2
Bouts of movement, locomotor time 21.31.41.4-1.2-1.21.2
Total resting periods, locomotor time 20.90.91.0-1.0-1.01.0
Rest time, locomotor task time 20.10.10.1-0.2-0.30.2
Distance moved, locomotor task time 20.80.91.00.91.0-0.9
Vertical activity count, locomotor time 20.20.20.30.30.5-0.3
Weight adjusted by age3.43.83.91.92.0-2.0
Seeking ratio, delayed vs. immediate footshock1.61.82.01.41.3-1.4
Locomotion in novel chamber0.00.00.0-0.2-0.00.1
Locomotion in novel chamber post-restriction0.50.60.70.80.6-0.8
Progressive ratio0.70.81.0-0.9-1.00.9
Food seeking constrained by brief footshock0.00.00.1-0.2-0.20.2
Seeking ratio, punishment vs. effort0.30.30.40.50.7-0.5
Run reversals in cocaine runway, females1.41.41.6-1.3-1.01.2
Run reversals in cocaine runway, males0.60.60.80.90.6-0.9
Latency to leave start box in cocaine runway1.31.41.6-1.1-1.31.1
Latency to leave start box in cocaine runway, F0.70.70.8-0.9-0.80.9
Latency to leave start box in cocaine runway, M0.60.60.9-0.6-0.90.7
Cd content in liver2.22.42.7-1.6-1.41.6
Co content in liver0.50.50.6-0.8-0.70.7
Cu content in liver0.20.30.40.60.4-0.6
Fe content in liver0.91.11.2-1.1-1.01.0
K content in liver1.51.51.61.21.2-1.2
Mg content in liver0.20.20.2-0.5-0.40.4
Mn content in liver0.70.80.90.90.9-0.9
Na content in liver0.20.20.30.50.4-0.5
Rb content in liver0.10.10.20.20.4-0.2
Se content in liver0.10.10.20.20.4-0.2
Sr content in liver0.10.00.10.3-0.1-0.2
Zn content in liver0.30.30.40.70.3-0.6