Phb

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000046799 0.03 0.03 8.6e-05 0.02 0.03 0.02 0.01 1.1e-03 8.0e-04 9.4e-04 2.5e-02
2 Brain gene expression ENSRNOG00000046799 0.05 0.03 2.0e-05 0.06 0.06 0.06 0.06 3.7e-06 3.3e-06 6.0e-06 4.9e-06
3 NAcc gene expression ENSRNOG00000046799 0.04 0.03 1.8e-03 0.06 0.04 0.01 0.05 4.1e-05 1.1e-03 2.6e-02 1.1e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail11.737.952.4-7.2-4.0-6.7
BMI without tail0.51.01.8-1.10.0-1.3
Body weight0.93.95.0-1.8-1.8-2.2
Epididymis fat weight0.00.10.1-0.4-0.1-0.1
Glucose1.21.82.4-1.2-1.6-1.2
Heart weight0.81.21.2-1.1-1.0-1.1
Left kidney weight0.10.20.5-0.0-0.70.1
Right kidney weight0.82.13.5-1.2-1.9-1.2
Tail length11.534.749.27.04.06.2
Length with tail4.416.328.05.31.64.3
Length without tail0.30.72.1-0.1-1.4-0.2
Liver weight, left0.50.71.41.20.50.7
Liver weight, right0.20.40.80.9-0.50.3
Parametrial fat weight0.30.51.20.51.10.3
Retroperitoneal fat weight0.10.40.6-0.7-0.6-0.5
Intraocular pressure1.21.72.21.31.11.5
Extensor digitorum longus weight1.14.55.5-1.8-2.2-2.4
Soleus weight1.74.95.4-2.2-2.1-2.3
Tibialis anterior weight0.10.30.60.30.8-0.2
Tibia length0.82.23.4-1.3-1.9-1.3
Number of licking bursts1.92.22.81.11.61.7
Food consumed during 24 hour testing period1.72.02.61.61.21.5
Times rat made contact with spout1.01.11.80.90.81.3
Mean time between licks in bursts0.91.32.4-1.1-1.6-0.4
Mean num. licks in bursts0.30.41.0-0.3-1.0-0.5
Std. dev. time between licks in bursts0.60.70.9-0.9-0.9-0.7
Water consumed over 24 hours0.10.10.20.20.20.4
Indifference point 0 sec1.62.63.7-1.6-1.3-1.9
Indifference point AUC0.10.10.10.3-0.30.3
Indifference point function ln k0.00.00.10.10.3-0.1
Indifference point function log k0.00.00.10.10.3-0.1
Delay discounting total patch changes 0 sec1.82.93.6-1.7-1.5-1.9
Delay discounting total patch changes 12 sec0.00.00.1-0.1-0.10.3
Delay discounting total patch changes 18 sec2.12.73.2-1.8-1.7-1.5
Delay discounting total patch changes 24 sec1.11.31.5-1.2-1.1-1.2
Delay discounting total patch changes 6 sec1.01.51.6-1.2-1.2-1.2
Delay discounting time to switch 0 sec0.20.20.30.40.60.5
Delay discounting water rate 0 sec2.03.13.8-1.8-1.6-2.0
Delay discounting water rate 12 sec0.81.11.3-1.0-1.1-1.0
Delay discounting water rate 18 sec0.00.00.1-0.10.00.2
Delay discounting water rate 24 sec1.01.42.1-1.4-1.0-1.1
Delay discounting water rate 6 sec0.10.20.2-0.30.4-0.5
Locomotor activity0.20.30.6-0.50.8-0.4
Locomotor testing distance0.30.50.8-0.70.9-0.4
Locomotor testing rearing0.30.51.2-0.31.1-0.4
Light reinforcement 10.10.20.6-0.20.8-0.3
Light reinforcement 20.60.81.40.81.20.5
Reaction time number correct1.42.02.3-1.5-1.5-1.2
Reaction time mean minus median1.41.83.41.80.81.2
Reaction time mean minus median AUC2.32.94.82.21.31.6
Reaction time num false alarms1.01.41.71.01.21.3
Reaction time num false alarms AUC1.01.51.91.01.21.4
Reaction time trials correct on left1.42.02.3-1.5-1.5-1.2
Reaction time trials on left1.31.92.2-1.5-1.4-1.2
Reaction time mean0.71.02.21.50.40.7
Reaction time mean AUC0.91.22.71.60.60.8
Median of all reaction times0.30.30.91.00.20.3
Reaction time omissions1.11.51.71.31.21.2
Reaction time false alarm rate2.02.83.01.51.71.7
Reaction time premature initiation rate0.20.30.40.50.60.6
Reaction time premature initiations0.00.00.1-0.2-0.3-0.0
Std. dev. reaction times1.31.83.51.90.61.2
Reaction time trials completed1.31.92.2-1.5-1.4-1.2
Reaction time trials AUC1.42.02.3-1.5-1.4-1.3
Social response proportion1.51.62.21.51.40.9
Social responses0.20.30.7-0.10.8-0.2
Social time0.70.92.2-0.31.50.8
Conditioned locomotion1.11.32.2-1.5-1.1-0.8
Cocaine response after cond. corrected4.34.86.8-2.6-1.3-2.4
Cocaine response after cond. not corrected2.32.64.0-2.0-0.9-1.7
Cocaine response before conditioning2.42.94.01.71.32.0
Saline control response0.40.50.8-0.10.90.9
Condit. Reinf. active minus inactive responses0.50.61.10.51.10.7
Condit. Reinf. active-inactive response ratio1.61.73.70.51.91.0
Condit. Reinf. active responses0.10.20.20.40.50.3
Condit. Reinf. inactive responses0.20.30.7-0.0-0.8-0.3
Condit. Reinf. lever presses0.20.20.50.7-0.10.3
Condit. Reinf. lever reinforcers received0.10.20.20.50.50.3
Pavlov. Cond. lever latency2.43.34.11.62.01.8
Pavlov. Cond. magazine entry latency0.30.40.40.6-0.70.4
Pavlov. Cond. change in total contacts0.91.32.1-0.8-1.4-1.1
Pavlov. Cond. index score1.01.32.5-0.7-1.6-0.9
Pavlov. Cond. latency score0.70.81.9-0.5-1.4-0.6
Pavlov. Cond. lever contacts1.62.32.7-1.3-1.6-1.5
Pavlov. Cond. magazine entry number0.70.92.50.21.60.4
Pavlov. Cond. intertrial magazine entries2.33.04.41.52.11.6
Pavlov. Cond. lever-magazine prob. diff.1.21.52.9-0.8-1.7-1.1
Pavlov. Cond. response bias1.31.92.8-1.1-1.7-1.3
Conditioned reinforcement - actives0.50.50.70.50.80.8
Conditioned reinforcement - inactives0.20.30.40.30.50.6
Conditioned locomotion0.10.10.2-0.30.50.3
Intermittent access intake day 1-15 change0.60.60.8-0.9-0.4-0.8
Intermittent access intake escalation0.30.30.4-0.6-0.3-0.7
Intermittent access intake escalation 20.50.50.8-0.80.0-0.9
Intermitt. access day 1 inactive lever presses0.20.20.6-0.00.80.1
Intermitt. access day 15 inactive lever presses1.92.12.3-1.4-1.5-1.4
Intermitt. access escalation Index0.20.20.40.40.70.3
Intermittent access day 1 total infusions1.01.11.91.10.41.4
Intermittent access day 15 total infusions0.50.60.80.80.60.9
Intermittent access terminal intake (last 3 days)0.30.30.40.50.40.7
Intermittent access total infusions0.30.30.60.60.20.8
Intermittent access day 1 locomotion2.42.53.61.61.11.9
Intermittent access day 15 total locomotion0.80.91.70.80.41.3
Intermittent access total locomotion1.11.22.31.00.61.5
Intermittent access standard deviation0.50.50.7-0.9-0.7-0.6
Cocaine induced anxiety0.10.20.50.10.70.0
Post-drug Anxiety1.61.82.41.31.61.2
Baseline Anxiety0.10.10.2-0.1-0.40.1
Lifetime Intake0.40.40.80.60.20.9
Incentive Sensitization - Responses0.60.50.70.60.80.8
Incentive Sensitization - Breakpoint0.30.30.60.30.70.5
Progressive ratio test 1 active lever presses1.51.62.11.11.21.5
Progressive ratio test 1 breakpoint1.61.62.31.11.21.5
Progressive ratio test 1 inactive lever presses0.20.20.4-0.60.2-0.3
Progressive ratio test 2 active lever presses1.81.92.21.31.41.5
Progressive ratio test 2 breakpoint1.11.21.51.01.21.2
Progressive ratio test 2 inactive lever presses0.10.10.20.20.40.4
Total sessions with >9 infusions0.91.02.20.90.31.5
Short access day 1 total inactive lever presses0.00.10.10.30.20.0
Short access day 10 total inactive lever presses0.20.20.3-0.6-0.1-0.5
Short access day 1 total infusions0.10.10.10.1-0.30.3
Short access day 10 total infusions0.20.20.50.3-0.20.7
Short access total infusions0.20.20.3-0.0-0.60.4
Short access day 1 locomotion0.10.10.2-0.0-0.30.4
Short access day 10 total locomotion1.31.42.41.10.81.6
Short access total locomotion0.40.41.00.4-0.11.0
Compulsive drug intake5.45.46.52.62.12.3
One hour access (0.3 mA shock)1.01.21.61.01.01.3
One hour access (shock baseline)0.40.50.9-1.0-0.3-0.6
Number of responses in last shaping day2.22.32.6-1.5-1.6-1.4
Context. condit. distance diff. score0.91.11.5-1.1-0.7-1.2
Locomotion velocity, session 10.20.20.30.30.60.4
Locomotion distance, session 14.55.86.62.62.02.6
Locomotion velocity, session 20.70.91.31.20.01.1
Locomotion distance, session 26.59.411.23.12.73.4
Locomotion velocity, session 31.01.12.0-0.8-1.4-0.9
Locomotion distance, session 31.01.11.41.10.81.2
Stereotopy head waving bouts, day 34.35.15.9-2.3-2.1-2.4
Stereotopy head waving duration, day 33.54.24.8-2.0-2.0-2.2
Locomotion velocity, session 70.80.91.41.20.21.1
Locomotion distance, session 75.77.29.32.92.03.1
Stereotopy head waving bouts, day 70.60.71.0-0.7-0.7-1.0
Stereotopy head waving duration, day 70.60.70.9-0.6-0.9-1.0
Locomotion velocity, session 80.81.01.7-0.9-0.8-1.3
Locomotion distance, session 80.60.91.00.91.00.9
Degree of sensitization distance0.30.30.50.50.20.7
Degree of sensitization stereotypy0.20.20.40.50.60.3
Condit. Reinf. active minus inactive responses1.11.31.31.11.11.1
Condit. Reinf. active-inactive response ratio0.00.00.1-0.20.2-0.1
Condit. Reinf. active responses1.31.61.61.31.31.3
Condit. Reinf. inactive responses1.51.72.01.21.31.4
Incentive salience index mean2.42.83.11.61.81.7
Condit. Reinf. lever presses3.54.75.21.92.22.3
Time in familiar zone, hab. session 10.50.51.00.31.00.6
Time in novel zone, hab. session 13.93.84.8-1.6-2.0-2.2
Total zone transitions, hab. session 16.59.19.93.12.93.0
Total locomotion distance, hab. session 13.95.66.42.52.32.3
Locomotion velocity, hab. session 15.37.78.32.92.62.8
Time in familiar zone, hab. session 21.11.21.6-1.3-0.6-1.3
Time in novel zone, hab. session 20.20.20.20.50.30.5
Total zone transitions, hab. session 24.96.36.62.52.42.6
Total locomotion distance, hab. session 21.21.61.81.31.11.3
Locomotion velocity, hab. session 21.31.72.11.41.11.4
Novel to familiar place preference ratio0.40.40.80.50.9-0.1
Novelty place preference0.30.30.70.40.8-0.2
Time in novel zone, NPP test0.30.30.60.20.8-0.4
Total zone transitions, NPP test6.69.411.03.02.93.3
Total locomotion distance, NPP test2.53.54.11.81.72.0
Locomotion velocity, NPP test2.83.94.82.11.62.2
Pavlov. Cond. lever latency2.43.14.7-1.3-2.2-1.6
Pavlov. Cond. magazine entry latency0.40.51.40.41.20.2
Pavlov. Cond. change in total contacts4.74.96.62.02.62.0
Pavlov. Cond. index score1.72.14.21.12.01.0
Pavlov. Cond. latency score1.62.13.91.12.01.1
Pavlov. Cond. lever contacts3.84.56.11.72.52.1
Pavlov. Cond. magazine entry number0.91.22.3-0.9-1.5-0.7
Pavlov. Cond. intertrial magazine entries1.51.73.11.30.71.8
Pavlov. Cond. lever-magazine prob. diff.1.51.83.81.01.90.9
Pavlov. Cond. response bias1.41.73.20.91.81.0
Bone: apparent density1.11.83.0-1.3-0.8-1.7
Bone surface0.30.60.8-0.6-0.8-0.9
Bone volume1.11.82.2-1.1-1.4-1.5
Bone: connectivity density0.30.51.2-0.6-0.2-1.1
Bone: cortical apparent density3.14.16.22.51.42.0
Bone: cortical area0.40.60.9-0.7-0.9-0.6
Bone: cortical porosity0.20.20.3-0.6-0.5-0.4
Bone: cortical porosity0.10.10.2-0.4-0.3-0.2
Bone: cortical thickness0.40.61.0-0.5-1.0-0.7
Bone: cortical thickness0.20.20.30.50.4-0.3
Bone: cortical tissue density3.54.66.92.61.52.1
Bone: elastic displacement0.00.00.1-0.10.1-0.3
Bone: elastic work0.00.00.10.0-0.0-0.3
Bone: endosteal estimation0.00.00.0-0.0-0.1-0.0
Bone: endosteal perimeter0.00.10.2-0.4-0.3-0.1
Bone: final force0.00.00.1-0.3-0.0-0.2
Bone: final moment0.10.10.2-0.4-0.1-0.4
Bone: marrow area0.00.00.00.10.00.0
Bone: maximum diameter0.10.20.3-0.5-0.4-0.2
Bone: maximum force0.50.80.8-0.9-0.9-0.9
Bone: maximum moment0.61.11.1-1.0-1.0-1.0
Bone: minimum diameter0.10.10.4-0.1-0.6-0.0
Bone: periosteal estimation0.10.30.3-0.6-0.5-0.5
Bone: periosteal perimeter0.61.01.3-1.2-0.9-0.9
Bone: post-yield work0.81.11.4-1.0-1.2-1.0
Bone: stiffness0.00.00.1-0.2-0.30.1
Bone: tissue strength1.11.02.0-1.0-1.4-0.4
Bone: trabecular number0.10.20.4-0.20.1-0.7
Bone: trabecular spacing0.20.20.5-0.20.70.3
Bone: trabecular thickness5.26.38.8-2.0-3.0-2.5
Bone: trabecular tissue density0.20.30.40.0-0.60.6
Breakpoint value in progressive ratio session2.02.32.91.71.31.5
Distance traveled before self-admin3.63.95.01.82.21.8
Distance traveled after self-admin0.50.50.7-0.40.8-0.8
Delta time in closed arm before/after self-admin0.40.40.6-0.2-0.8-0.7
Delta time in open arm before/after self-admin0.00.00.00.1-0.0-0.0
Diff in mean of infusions in LGA sessions1.61.82.31.51.51.0
Extinction: sum of active levers before priming0.80.91.51.20.11.0
Active lever presses in extinction session 60.20.20.6-0.3-0.1-0.7
Delta distance traveled before/after self-admin3.33.54.9-1.9-1.4-2.2
Delta ambulatory time before/after self-admin3.13.34.3-1.9-1.4-2.1
Time in closed arm before self-admin2.93.33.3-1.8-1.8-1.8
Time in closed arm after self-admin3.83.94.8-1.7-2.2-2.0
Time in open arm before self-admin0.70.80.90.71.01.0
Time in open arm after self-admin0.60.60.90.60.81.0
Sum of active levers in priming session hrs 5-64.03.95.32.31.62.0
Time to tail flick, vehicle, before self-admin0.90.91.21.11.00.9
Time to tail flick, vehicle, after self-admin0.90.91.1-0.8-1.0-1.0
Time to tail flick, test, before self-admin1.81.82.5-0.9-1.4-1.6
Time to tail flick, test, after self-admin1.21.21.7-0.8-1.1-1.3
Delta time to tail flick, vehicle, before/after SA3.13.03.6-1.8-1.5-1.9
Delta time to tail flick, test, before/after SA0.40.40.50.50.70.6
Ambulatory time before self-admin2.62.73.91.52.01.4
Ambulatory time after self-admin0.40.40.9-0.60.3-0.9
Total heroin consumption0.30.40.60.60.80.4
Area under the delay curve0.10.10.20.0-0.10.4
Delay disc. indifference point, 0s delay0.00.00.0-0.1-0.10.2
Delay disc. indifference point, 16s delay1.21.21.4-1.2-1.2-1.0
Delay disc. indifference point, 2s delay0.20.20.50.3-0.10.7
Delay disc. indifference point, 24s delay0.80.81.10.90.71.1
Delay disc. indifference point, 4s delay0.70.71.31.00.01.1
Delay disc. indifference point, 8s delay0.10.10.20.20.20.4
Delay discount exponential model param0.10.10.3-0.20.0-0.5
Delay discount hyperbolic model param0.10.10.3-0.30.0-0.6
Fecal boli incidents, locomotor time 13.84.15.9-1.9-1.7-2.4
Change in fecal boli incidents, locomotor task2.32.22.91.51.21.7
Time >=10cm from walls, locomotor time 10.60.61.70.31.30.3
Bouts of movement, locomotor time 10.60.71.5-0.5-1.2-0.5
Total resting periods, locomotor time 11.11.22.1-0.9-1.5-0.9
Rest time, locomotor task time 10.20.20.3-0.4-0.5-0.3
Distance moved, locomotor task time 12.83.13.41.71.91.7
Vertical activity count, locomotor time 10.91.01.30.81.01.1
Time >=10cm from walls, locomotor time 20.70.71.20.61.10.8
Bouts of movement, locomotor time 20.00.00.0-0.00.10.1
Total resting periods, locomotor time 20.00.00.0-0.10.20.1
Rest time, locomotor task time 20.30.40.60.60.40.8
Distance moved, locomotor task time 20.10.10.20.4-0.10.2
Vertical activity count, locomotor time 20.10.10.10.40.00.2
Weight adjusted by age0.10.10.10.30.1-0.3
Seeking ratio, delayed vs. immediate footshock1.72.02.5-1.4-1.2-1.6
Locomotion in novel chamber0.40.51.00.51.00.3
Locomotion in novel chamber post-restriction0.40.41.0-1.0-0.5-0.3
Progressive ratio0.20.30.4-0.30.60.6
Food seeking constrained by brief footshock0.10.10.1-0.30.4-0.4
Seeking ratio, punishment vs. effort0.10.20.50.70.1-0.1
Run reversals in cocaine runway, females0.10.10.10.3-0.30.0
Run reversals in cocaine runway, males0.30.31.0-1.0-0.20.0
Latency to leave start box in cocaine runway6.57.19.2-2.2-2.7-3.0
Latency to leave start box in cocaine runway, F9.09.910.3-3.0-3.2-3.2
Latency to leave start box in cocaine runway, M0.30.30.80.1-0.1-0.9
Cd content in liver1.21.32.80.41.70.9
Co content in liver0.10.10.30.00.50.3
Cu content in liver10.412.514.23.83.23.6
Fe content in liver2.32.73.71.71.31.9
K content in liver0.80.81.31.1-0.21.1
Mg content in liver2.93.04.52.00.82.1
Mn content in liver3.13.64.52.11.61.9
Na content in liver0.40.40.70.90.10.7
Rb content in liver0.20.30.40.40.60.4
Se content in liver0.00.00.1-0.30.10.0
Sr content in liver0.40.40.60.8-0.20.7
Zn content in liver0.60.70.90.60.90.9