Lrrc45

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000045926 0.44 0.13 0.0e+00 0.36 0.38 0.38 0.38 3.0e-42 9.2e-44 4.8e-44 4.5e-44
2 Liver gene expression ENSRNOG00000045926 0.27 0.12 0.0e+00 0.16 0.16 0.16 0.16 6.7e-18 1.2e-17 1.6e-17 3.1e-17
3 NAcc gene expression ENSRNOG00000045926 0.06 0.04 6.8e-04 0.05 0.03 0.04 0.04 7.6e-05 2.1e-03 6.7e-04 3.5e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.10.20.30.30.30.6
BMI without tail0.10.10.20.30.30.4
Body weight1.77.18.52.92.92.1
Epididymis fat weight0.10.20.40.60.6-0.0
Glucose0.71.11.80.90.91.3
Heart weight0.81.23.30.40.41.8
Left kidney weight0.41.01.21.01.01.1
Right kidney weight0.00.00.10.20.20.3
Tail length0.82.53.31.81.81.0
Length with tail1.86.58.72.93.01.5
Length without tail1.32.93.81.92.01.1
Liver weight, left0.50.91.20.80.81.1
Liver weight, right1.52.43.01.71.71.2
Parametrial fat weight0.91.72.01.41.41.1
Retroperitoneal fat weight1.55.05.72.42.41.9
Intraocular pressure0.00.10.10.30.3-0.1
Extensor digitorum longus weight0.41.41.6-1.2-1.3-1.1
Soleus weight0.41.21.21.11.11.0
Tibialis anterior weight0.10.40.5-0.6-0.7-0.5
Tibia length9.125.626.25.15.15.0
Number of licking bursts0.10.20.2-0.3-0.3-0.5
Food consumed during 24 hour testing period0.20.20.30.50.50.1
Times rat made contact with spout3.54.04.02.02.02.0
Mean time between licks in bursts1.52.12.2-1.5-1.5-1.4
Mean num. licks in bursts1.51.92.11.31.31.4
Std. dev. time between licks in bursts2.12.53.0-1.5-1.5-1.7
Water consumed over 24 hours0.60.70.90.90.90.6
Indifference point 0 sec0.00.00.00.20.1-0.1
Indifference point AUC0.10.20.3-0.5-0.5-0.0
Indifference point function ln k0.71.01.7-0.8-0.8-1.3
Indifference point function log k0.71.01.7-0.8-0.8-1.3
Delay discounting total patch changes 0 sec0.00.00.10.10.0-0.3
Delay discounting total patch changes 12 sec0.00.10.20.1-0.00.4
Delay discounting total patch changes 18 sec1.21.52.2-1.4-1.5-0.8
Delay discounting total patch changes 24 sec0.10.10.20.40.30.4
Delay discounting total patch changes 6 sec0.40.70.80.90.90.6
Delay discounting time to switch 0 sec0.00.10.1-0.3-0.2-0.3
Delay discounting water rate 0 sec0.10.20.30.60.60.1
Delay discounting water rate 12 sec0.20.30.4-0.7-0.7-0.4
Delay discounting water rate 18 sec0.10.20.4-0.2-0.2-0.6
Delay discounting water rate 24 sec0.10.10.2-0.4-0.4-0.1
Delay discounting water rate 6 sec0.20.30.4-0.5-0.4-0.7
Locomotor activity0.10.20.3-0.4-0.4-0.5
Locomotor testing distance0.61.02.1-0.8-0.7-1.4
Locomotor testing rearing0.50.81.2-0.8-0.8-1.1
Light reinforcement 10.00.10.1-0.3-0.3-0.0
Light reinforcement 20.30.40.60.70.70.4
Reaction time number correct4.46.37.1-2.7-2.7-2.2
Reaction time mean minus median0.20.20.40.40.40.6
Reaction time mean minus median AUC0.00.00.10.10.10.3
Reaction time num false alarms0.10.10.1-0.3-0.30.0
Reaction time num false alarms AUC0.30.40.5-0.7-0.7-0.4
Reaction time trials correct on left4.46.37.1-2.7-2.7-2.2
Reaction time trials on left4.66.57.3-2.7-2.7-2.2
Reaction time mean0.10.10.4-0.1-0.10.7
Reaction time mean AUC0.10.10.2-0.4-0.40.2
Median of all reaction times0.10.10.2-0.3-0.30.4
Reaction time omissions0.10.10.1-0.3-0.3-0.4
Reaction time false alarm rate0.40.50.60.70.70.8
Reaction time premature initiation rate0.20.30.3-0.6-0.5-0.5
Reaction time premature initiations2.43.43.9-2.0-2.0-1.6
Std. dev. reaction times0.30.50.7-0.8-0.9-0.0
Reaction time trials completed4.66.57.3-2.7-2.7-2.2
Reaction time trials AUC4.46.27.2-2.7-2.7-2.1
Social response proportion1.01.11.5-0.9-0.9-1.2
Social responses0.60.81.8-0.5-0.5-1.4
Social time0.30.40.5-0.5-0.5-0.7
Conditioned locomotion0.30.40.50.70.70.4
Cocaine response after cond. corrected0.20.30.40.60.6-0.0
Cocaine response after cond. not corrected0.10.10.40.10.1-0.6
Cocaine response before conditioning1.51.82.2-1.3-1.3-1.5
Saline control response1.31.72.41.51.60.7
Condit. Reinf. active minus inactive responses0.20.30.60.40.40.8
Condit. Reinf. active-inactive response ratio2.52.73.21.51.61.8
Condit. Reinf. active responses0.00.10.1-0.3-0.30.2
Condit. Reinf. inactive responses1.11.41.7-1.3-1.3-0.9
Condit. Reinf. lever presses0.20.20.3-0.5-0.5-0.4
Condit. Reinf. lever reinforcers received0.10.20.2-0.5-0.50.0
Pavlov. Cond. lever latency0.30.40.60.70.70.2
Pavlov. Cond. magazine entry latency3.84.45.0-2.2-2.2-1.8
Pavlov. Cond. change in total contacts1.11.51.8-1.3-1.4-0.9
Pavlov. Cond. index score1.11.51.8-1.3-1.3-1.0
Pavlov. Cond. latency score1.31.62.0-1.4-1.4-1.0
Pavlov. Cond. lever contacts0.30.50.7-0.8-0.9-0.2
Pavlov. Cond. magazine entry number3.44.24.32.02.12.0
Pavlov. Cond. intertrial magazine entries0.81.11.11.01.11.0
Pavlov. Cond. lever-magazine prob. diff.1.31.72.0-1.4-1.4-1.1
Pavlov. Cond. response bias0.81.21.5-1.2-1.2-0.7
Conditioned reinforcement - actives0.30.30.5-0.4-0.3-0.7
Conditioned reinforcement - inactives1.21.41.91.31.40.7
Conditioned locomotion0.10.20.30.40.5-0.2
Intermittent access intake day 1-15 change0.50.50.70.80.80.4
Intermittent access intake escalation0.30.30.40.70.6-0.0
Intermittent access intake escalation 24.34.24.82.22.21.8
Intermitt. access day 1 inactive lever presses1.41.52.01.41.40.6
Intermitt. access day 15 inactive lever presses0.10.10.10.30.30.1
Intermitt. access escalation Index0.40.40.8-0.4-0.4-0.9
Intermittent access day 1 total infusions0.00.00.00.10.1-0.1
Intermittent access day 15 total infusions0.10.10.10.40.4-0.2
Intermittent access terminal intake (last 3 days)0.40.50.70.90.90.1
Intermittent access total infusions0.10.10.20.30.2-0.5
Intermittent access day 1 locomotion0.30.30.80.20.3-0.9
Intermittent access day 15 total locomotion0.60.71.01.01.00.1
Intermittent access total locomotion0.40.40.60.70.8-0.5
Intermittent access standard deviation1.11.11.61.21.30.6
Cocaine induced anxiety9.110.412.43.13.03.5
Post-drug Anxiety2.02.23.11.41.31.8
Baseline Anxiety7.57.98.6-2.8-2.7-2.9
Lifetime Intake0.10.10.30.00.0-0.6
Incentive Sensitization - Responses0.30.30.40.40.50.6
Incentive Sensitization - Breakpoint0.40.40.50.50.50.7
Progressive ratio test 1 active lever presses0.10.10.20.40.4-0.3
Progressive ratio test 1 breakpoint0.10.10.10.40.30.0
Progressive ratio test 1 inactive lever presses0.30.30.40.70.60.2
Progressive ratio test 2 active lever presses0.40.40.60.70.80.2
Progressive ratio test 2 breakpoint0.20.20.30.50.5-0.1
Progressive ratio test 2 inactive lever presses0.60.71.11.01.10.4
Total sessions with >9 infusions0.60.71.1-0.7-0.7-1.0
Short access day 1 total inactive lever presses0.50.61.4-0.5-0.4-1.2
Short access day 10 total inactive lever presses2.32.52.81.71.61.4
Short access day 1 total infusions0.91.01.3-0.9-0.9-1.1
Short access day 10 total infusions0.30.30.50.70.70.3
Short access total infusions0.10.10.1-0.3-0.3-0.3
Short access day 1 locomotion0.00.00.1-0.0-0.00.3
Short access day 10 total locomotion0.60.71.01.01.00.3
Short access total locomotion0.00.00.10.20.2-0.2
Compulsive drug intake0.10.10.20.20.20.4
One hour access (0.3 mA shock)0.20.30.40.40.40.6
One hour access (shock baseline)0.10.10.3-0.2-0.1-0.5
Number of responses in last shaping day0.20.20.30.50.60.1
Context. condit. distance diff. score0.81.01.2-1.1-1.1-0.8
Locomotion velocity, session 10.10.10.2-0.0-0.00.4
Locomotion distance, session 13.44.44.7-2.2-2.2-2.0
Locomotion velocity, session 21.72.02.6-1.3-1.3-1.6
Locomotion distance, session 21.42.12.1-1.4-1.5-1.4
Locomotion velocity, session 30.20.20.4-0.4-0.4-0.6
Locomotion distance, session 31.51.62.1-1.2-1.2-1.4
Stereotopy head waving bouts, day 30.00.00.1-0.0-0.00.3
Stereotopy head waving duration, day 30.00.10.1-0.3-0.30.1
Locomotion velocity, session 70.60.60.9-0.7-0.7-1.0
Locomotion distance, session 74.86.16.6-2.5-2.6-2.3
Stereotopy head waving bouts, day 70.10.10.10.20.20.3
Stereotopy head waving duration, day 70.20.30.30.60.60.5
Locomotion velocity, session 82.12.62.7-1.7-1.7-1.5
Locomotion distance, session 82.94.34.7-2.2-2.2-1.9
Degree of sensitization distance0.10.10.2-0.5-0.5-0.0
Degree of sensitization stereotypy0.10.10.10.30.30.3
Condit. Reinf. active minus inactive responses0.91.01.11.01.10.9
Condit. Reinf. active-inactive response ratio0.40.40.60.70.80.5
Condit. Reinf. active responses1.31.51.81.31.31.0
Condit. Reinf. inactive responses0.30.30.40.60.60.5
Incentive salience index mean0.40.50.70.80.80.4
Condit. Reinf. lever presses0.40.51.0-0.6-0.6-1.0
Time in familiar zone, hab. session 10.20.20.40.40.40.6
Time in novel zone, hab. session 10.10.10.2-0.3-0.4-0.4
Total zone transitions, hab. session 10.50.70.9-0.9-0.9-0.5
Total locomotion distance, hab. session 10.10.20.2-0.5-0.5-0.4
Locomotion velocity, hab. session 10.10.20.2-0.5-0.5-0.4
Time in familiar zone, hab. session 20.30.30.3-0.6-0.5-0.6
Time in novel zone, hab. session 20.00.00.0-0.2-0.2-0.1
Total zone transitions, hab. session 22.02.63.2-1.8-1.8-1.3
Total locomotion distance, hab. session 21.01.31.4-1.2-1.2-1.0
Locomotion velocity, hab. session 20.60.80.9-1.0-1.0-0.8
Novel to familiar place preference ratio4.34.55.02.22.21.9
Novelty place preference4.44.55.02.22.21.9
Time in novel zone, NPP test3.23.43.81.91.91.6
Total zone transitions, NPP test3.44.95.2-2.3-2.3-2.1
Total locomotion distance, NPP test2.43.33.4-1.8-1.8-1.8
Locomotion velocity, NPP test1.31.92.0-1.3-1.3-1.4
Pavlov. Cond. lever latency2.63.43.9-2.0-2.0-1.5
Pavlov. Cond. magazine entry latency4.35.56.12.52.52.1
Pavlov. Cond. change in total contacts2.12.32.71.71.71.1
Pavlov. Cond. index score3.94.95.52.32.32.0
Pavlov. Cond. latency score3.94.95.42.32.32.0
Pavlov. Cond. lever contacts1.21.41.71.31.30.9
Pavlov. Cond. magazine entry number5.67.07.3-2.7-2.7-2.5
Pavlov. Cond. intertrial magazine entries0.20.20.3-0.4-0.4-0.5
Pavlov. Cond. lever-magazine prob. diff.4.15.25.82.42.42.0
Pavlov. Cond. response bias4.25.15.92.42.41.9
Bone: apparent density0.00.00.0-0.2-0.2-0.1
Bone surface0.10.20.30.50.50.4
Bone volume0.00.10.10.30.20.3
Bone: connectivity density0.40.60.7-0.8-0.8-0.8
Bone: cortical apparent density0.50.70.7-0.9-0.9-0.8
Bone: cortical area5.17.78.52.92.92.5
Bone: cortical porosity5.76.26.82.62.62.2
Bone: cortical porosity4.95.35.62.42.42.2
Bone: cortical thickness6.210.311.03.33.33.0
Bone: cortical thickness2.22.62.71.61.61.6
Bone: cortical tissue density0.70.80.9-0.9-0.9-0.9
Bone: elastic displacement1.71.92.21.41.31.5
Bone: elastic work10.313.413.93.73.63.7
Bone: endosteal estimation0.40.80.9-0.9-0.9-0.8
Bone: endosteal perimeter0.40.80.91.01.00.8
Bone: final force3.86.26.72.62.62.3
Bone: final moment4.98.28.83.03.02.6
Bone: marrow area0.40.80.9-0.9-1.0-0.8
Bone: maximum diameter0.81.51.71.31.31.0
Bone: maximum force3.25.55.82.42.42.2
Bone: maximum moment4.27.47.72.82.82.6
Bone: minimum diameter2.74.95.72.42.41.9
Bone: periosteal estimation0.81.71.91.41.41.1
Bone: periosteal perimeter4.37.27.72.82.82.5
Bone: post-yield work0.50.70.9-0.9-0.9-0.7
Bone: stiffness0.30.40.50.70.70.5
Bone: tissue strength0.00.00.00.20.20.0
Bone: trabecular number0.00.00.0-0.1-0.1-0.0
Bone: trabecular spacing1.72.12.4-1.4-1.4-1.5
Bone: trabecular thickness2.63.13.71.71.71.9
Bone: trabecular tissue density0.50.80.8-0.9-0.9-0.8
Breakpoint value in progressive ratio session1.71.92.61.61.60.7
Distance traveled before self-admin2.72.83.11.71.71.6
Distance traveled after self-admin0.00.00.0-0.2-0.2-0.1
Delta time in closed arm before/after self-admin0.50.51.2-0.4-0.3-1.1
Delta time in open arm before/after self-admin0.10.10.2-0.2-0.20.4
Diff in mean of infusions in LGA sessions0.20.20.6-0.0-0.0-0.8
Extinction: sum of active levers before priming0.30.30.5-0.4-0.40.7
Active lever presses in extinction session 61.11.11.51.21.20.6
Delta distance traveled before/after self-admin2.32.42.7-1.6-1.6-1.4
Delta ambulatory time before/after self-admin3.43.73.7-1.9-1.9-1.9
Time in closed arm before self-admin0.20.20.40.40.40.6
Time in closed arm after self-admin0.20.20.30.50.5-0.1
Time in open arm before self-admin0.20.20.4-0.3-0.2-0.6
Time in open arm after self-admin0.20.20.4-0.6-0.6-0.1
Sum of active levers in priming session hrs 5-62.32.22.51.61.61.4
Time to tail flick, vehicle, before self-admin0.10.10.3-0.00.00.5
Time to tail flick, vehicle, after self-admin1.51.61.7-1.3-1.2-1.3
Time to tail flick, test, before self-admin0.30.30.40.50.4-0.6
Time to tail flick, test, after self-admin0.30.30.70.20.3-0.8
Delta time to tail flick, vehicle, before/after SA1.31.31.9-1.0-1.0-1.4
Delta time to tail flick, test, before/after SA0.10.10.20.10.20.5
Ambulatory time before self-admin3.63.83.91.91.92.0
Ambulatory time after self-admin0.00.00.10.10.10.3
Total heroin consumption2.02.43.01.61.71.2
Area under the delay curve0.80.91.7-0.7-0.6-1.3
Delay disc. indifference point, 0s delay0.00.00.1-0.00.0-0.4
Delay disc. indifference point, 16s delay3.83.94.7-1.9-1.8-2.2
Delay disc. indifference point, 2s delay0.10.10.20.30.4-0.2
Delay disc. indifference point, 24s delay0.50.50.6-0.7-0.6-0.8
Delay disc. indifference point, 4s delay0.20.20.6-0.1-0.0-0.8
Delay disc. indifference point, 8s delay0.10.10.30.10.2-0.6
Delay discount exponential model param0.70.71.50.60.61.2
Delay discount hyperbolic model param0.70.71.50.60.51.2
Fecal boli incidents, locomotor time 10.30.30.4-0.6-0.5-0.5
Change in fecal boli incidents, locomotor task0.00.00.10.20.2-0.1
Time >=10cm from walls, locomotor time 11.01.01.2-1.1-1.1-0.8
Bouts of movement, locomotor time 10.60.71.0-1.0-1.0-0.4
Total resting periods, locomotor time 10.40.50.6-0.8-0.8-0.4
Rest time, locomotor task time 10.40.40.40.60.60.6
Distance moved, locomotor task time 10.30.30.8-0.2-0.3-0.9
Vertical activity count, locomotor time 10.20.20.4-0.4-0.4-0.6
Time >=10cm from walls, locomotor time 20.00.00.0-0.2-0.20.1
Bouts of movement, locomotor time 21.92.13.3-1.2-1.2-1.8
Total resting periods, locomotor time 22.32.54.0-1.3-1.3-2.0
Rest time, locomotor task time 20.10.10.3-0.1-0.1-0.6
Distance moved, locomotor task time 20.00.00.1-0.1-0.2-0.3
Vertical activity count, locomotor time 20.40.50.6-0.8-0.8-0.4
Weight adjusted by age3.33.74.91.81.82.2
Seeking ratio, delayed vs. immediate footshock0.50.50.70.80.80.5
Locomotion in novel chamber0.70.80.9-1.0-1.0-0.8
Locomotion in novel chamber post-restriction0.60.81.00.90.81.0
Progressive ratio0.10.10.2-0.2-0.2-0.4
Food seeking constrained by brief footshock0.10.20.20.40.50.3
Seeking ratio, punishment vs. effort0.00.00.00.0-0.00.1
Run reversals in cocaine runway, females1.91.82.7-1.6-1.7-0.5
Run reversals in cocaine runway, males4.24.04.32.02.02.1
Latency to leave start box in cocaine runway0.70.81.0-1.0-1.0-0.7
Latency to leave start box in cocaine runway, F1.31.41.7-1.3-1.3-0.9
Latency to leave start box in cocaine runway, M0.00.00.00.0-0.1-0.1
Cd content in liver1.21.41.6-1.3-1.3-0.9
Co content in liver0.10.10.3-0.2-0.2-0.5
Cu content in liver1.82.22.71.61.61.2
Fe content in liver0.70.80.9-1.0-1.0-0.8
K content in liver0.10.10.20.30.4-0.4
Mg content in liver1.61.72.6-1.1-1.1-1.6
Mn content in liver0.10.10.20.40.40.2
Na content in liver0.10.10.30.10.1-0.5
Rb content in liver0.00.00.1-0.2-0.10.2
Se content in liver0.00.00.10.20.20.0
Sr content in liver1.51.41.41.21.21.2
Zn content in liver0.00.00.10.10.2-0.3