ENSRNOG00000045615

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000045615 0.06 0.04 1.2e-09 0.07 0.07 0.07 0.07 2.9e-08 9.6e-09 1.0e-08 1.4e-08
2 Brain intron excision ratio chr10:103098301:103099841 0.03 0.03 6.5e-04 0.02 0.02 0.03 0.02 5.9e-03 2.6e-03 1.6e-03 4.9e-03
3 Liver gene expression ENSRNOG00000045615 0.04 0.03 1.2e-07 0.06 0.06 0.06 0.05 1.0e-06 6.6e-07 5.7e-07 1.2e-06
4 Liver mRNA stability ENSRNOG00000045615 0.02 0.02 4.9e-03 0.01 0.01 0.01 0.01 1.3e-02 3.9e-02 2.4e-02 3.8e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail0.10.30.60.20.1-0.80.8
BMI without tail1.22.43.5-1.51.7-1.9-1.0
Body weight0.62.54.11.7-1.31.12.0
Epididymis fat weight0.10.30.80.3-0.3-0.20.9
Glucose0.00.00.10.2-0.1-0.10.2
Heart weight0.30.40.70.6-0.70.10.8
Left kidney weight3.49.710.73.2-3.12.93.3
Right kidney weight1.33.64.02.0-1.91.91.8
Tail length0.20.71.1-0.81.0-0.5-0.9
Length with tail1.24.45.12.1-1.92.32.1
Length without tail4.810.511.33.3-3.33.13.4
Liver weight, left3.25.15.62.4-2.22.12.3
Liver weight, right1.01.72.11.5-1.11.21.4
Parametrial fat weight0.00.10.20.00.0-0.10.5
Retroperitoneal fat weight0.41.32.91.1-0.90.81.7
Intraocular pressure0.71.01.5-1.21.0-1.2-0.2
Extensor digitorum longus weight1.45.86.5-2.42.5-2.5-2.2
Soleus weight0.82.23.2-1.21.8-1.5-1.4
Tibialis anterior weight0.20.50.7-0.60.7-0.8-0.8
Tibia length13.437.941.36.4-5.86.46.0
Number of licking bursts0.00.00.00.20.20.20.2
Food consumed during 24 hour testing period0.10.10.2-0.10.40.3-0.3
Times rat made contact with spout0.30.30.5-0.60.7-0.4-0.5
Mean time between licks in bursts0.00.00.00.1-0.20.1-0.2
Mean num. licks in bursts0.50.60.8-0.90.6-0.8-0.8
Std. dev. time between licks in bursts2.02.42.7-1.61.6-1.3-1.6
Water consumed over 24 hours0.30.40.9-0.51.0-0.3-0.6
Indifference point 0 sec1.01.72.4-1.51.2-1.4-0.9
Indifference point AUC2.52.93.8-1.62.0-1.3-1.9
Indifference point function ln k0.30.40.70.4-0.90.00.8
Indifference point function log k0.30.40.70.4-0.90.00.8
Delay discounting total patch changes 0 sec1.42.33.2-1.81.4-1.7-1.2
Delay discounting total patch changes 12 sec4.76.37.4-2.52.7-2.4-2.3
Delay discounting total patch changes 18 sec2.93.84.6-2.12.2-1.8-1.6
Delay discounting total patch changes 24 sec0.00.00.1-0.10.00.30.1
Delay discounting total patch changes 6 sec2.43.74.4-1.92.1-1.9-1.8
Delay discounting time to switch 0 sec0.30.40.60.8-0.60.60.7
Delay discounting water rate 0 sec0.81.21.6-1.31.2-1.0-0.9
Delay discounting water rate 12 sec0.20.30.8-0.40.4-0.90.2
Delay discounting water rate 18 sec0.30.40.6-0.70.4-0.8-0.4
Delay discounting water rate 24 sec2.12.93.6-1.81.8-1.9-1.2
Delay discounting water rate 6 sec0.00.10.1-0.20.2-0.4-0.1
Locomotor activity0.00.00.1-0.2-0.2-0.0-0.2
Locomotor testing distance0.10.10.3-0.1-0.6-0.0-0.0
Locomotor testing rearing1.01.52.2-1.40.9-1.0-1.5
Light reinforcement 12.34.35.4-2.02.3-2.0-1.9
Light reinforcement 20.20.30.9-0.30.9-0.3-0.4
Reaction time number correct4.26.07.6-2.52.8-2.3-2.2
Reaction time mean minus median0.70.91.11.1-0.90.90.9
Reaction time mean minus median AUC1.01.31.71.3-1.01.31.0
Reaction time num false alarms0.10.10.2-0.50.2-0.4-0.1
Reaction time num false alarms AUC0.30.40.7-0.80.4-0.7-0.4
Reaction time trials correct on left4.26.07.6-2.52.8-2.3-2.2
Reaction time trials on left4.15.97.5-2.52.7-2.3-2.2
Reaction time mean0.10.10.20.3-0.50.30.2
Reaction time mean AUC0.00.00.10.1-0.30.00.0
Median of all reaction times0.00.10.20.1-0.40.2-0.1
Reaction time omissions0.70.91.11.0-0.81.11.0
Reaction time false alarm rate0.40.51.00.5-1.00.60.7
Reaction time premature initiation rate2.73.64.5-1.91.7-2.1-1.8
Reaction time premature initiations6.28.910.1-3.13.0-3.2-2.7
Std. dev. reaction times0.10.10.20.4-0.40.30.3
Reaction time trials completed4.15.97.5-2.52.7-2.3-2.2
Reaction time trials AUC4.97.08.8-2.73.0-2.5-2.4
Social response proportion0.50.50.6-0.70.8-0.8-0.5
Social responses0.20.20.5-0.30.7-0.2-0.5
Social time0.50.70.8-0.80.9-0.9-0.8
Conditioned locomotion0.20.20.4-0.60.6-0.4-0.3
Cocaine response after cond. corrected0.30.30.80.5-0.50.30.9
Cocaine response after cond. not corrected0.10.10.20.3-0.30.30.4
Cocaine response before conditioning0.30.31.0-0.40.30.0-1.0
Saline control response0.30.40.8-0.10.90.5-0.7
Condit. Reinf. active minus inactive responses0.30.40.60.5-0.70.80.4
Condit. Reinf. active-inactive response ratio0.10.10.30.4-0.30.50.2
Condit. Reinf. active responses0.00.00.1-0.4-0.0-0.1-0.2
Condit. Reinf. inactive responses0.60.71.0-1.00.7-0.8-0.8
Condit. Reinf. lever presses1.11.52.0-1.41.0-1.1-1.4
Condit. Reinf. lever reinforcers received0.10.20.4-0.60.1-0.5-0.3
Pavlov. Cond. lever latency1.11.52.41.5-0.91.21.2
Pavlov. Cond. magazine entry latency0.30.40.9-0.70.3-0.9-0.2
Pavlov. Cond. change in total contacts0.91.21.7-1.30.8-1.3-1.0
Pavlov. Cond. index score0.70.91.4-1.20.6-1.0-0.8
Pavlov. Cond. latency score0.40.50.9-0.90.4-0.8-0.6
Pavlov. Cond. lever contacts1.21.72.5-1.61.0-1.1-1.4
Pavlov. Cond. magazine entry number0.70.91.41.1-0.71.20.6
Pavlov. Cond. intertrial magazine entries0.10.20.3-0.50.40.1-0.4
Pavlov. Cond. lever-magazine prob. diff.0.81.01.6-1.30.7-1.1-0.9
Pavlov. Cond. response bias0.91.21.8-1.30.8-1.1-1.0
Conditioned reinforcement - actives0.90.91.2-1.00.8-1.1-0.8
Conditioned reinforcement - inactives0.30.30.40.6-0.60.60.3
Conditioned locomotion1.11.32.1-1.30.9-1.4-0.9
Intermittent access intake day 1-15 change0.20.20.50.5-0.00.7-0.2
Intermittent access intake escalation0.10.10.20.20.20.5-0.4
Intermittent access intake escalation 20.30.30.6-0.30.8-0.1-0.7
Intermitt. access day 1 inactive lever presses2.42.63.01.6-1.71.71.4
Intermitt. access day 15 inactive lever presses0.40.40.6-0.60.8-0.5-0.8
Intermitt. access escalation Index0.70.71.10.8-0.71.00.7
Intermittent access day 1 total infusions0.20.30.50.2-0.7-0.10.7
Intermittent access day 15 total infusions0.00.00.00.1-0.20.10.1
Intermittent access terminal intake (last 3 days)0.20.20.30.4-0.50.40.5
Intermittent access total infusions0.20.20.40.3-0.60.10.6
Intermittent access day 1 locomotion0.50.51.1-0.80.4-1.1-0.4
Intermittent access day 15 total locomotion0.10.10.20.2-0.50.00.4
Intermittent access total locomotion0.20.30.6-0.60.3-0.8-0.3
Intermittent access standard deviation4.75.05.62.4-2.22.12.2
Cocaine induced anxiety0.40.51.00.8-0.51.00.3
Post-drug Anxiety0.10.10.2-0.10.50.0-0.3
Baseline Anxiety0.00.00.1-0.20.1-0.30.1
Lifetime Intake0.30.40.60.5-0.70.30.8
Incentive Sensitization - Responses0.70.71.00.8-0.90.61.0
Incentive Sensitization - Breakpoint1.01.01.21.0-1.10.81.1
Progressive ratio test 1 active lever presses0.10.10.1-0.40.1-0.4-0.1
Progressive ratio test 1 breakpoint0.00.00.1-0.30.0-0.30.0
Progressive ratio test 1 inactive lever presses0.30.30.40.5-0.70.70.3
Progressive ratio test 2 active lever presses0.10.10.3-0.50.1-0.6-0.0
Progressive ratio test 2 breakpoint0.20.20.4-0.50.2-0.6-0.2
Progressive ratio test 2 inactive lever presses0.00.00.00.1-0.10.00.0
Total sessions with >9 infusions1.21.31.81.1-1.30.71.3
Short access day 1 total inactive lever presses0.40.50.60.6-0.80.50.7
Short access day 10 total inactive lever presses1.01.11.81.2-0.91.30.7
Short access day 1 total infusions1.41.52.31.2-1.21.01.5
Short access day 10 total infusions1.71.92.91.2-1.50.91.7
Short access total infusions0.40.40.80.5-0.60.20.9
Short access day 1 locomotion0.40.50.60.7-0.70.50.8
Short access day 10 total locomotion0.50.50.70.7-0.80.50.8
Short access total locomotion1.21.21.61.1-1.20.71.3
Compulsive drug intake0.60.60.9-0.70.8-0.9-0.5
One hour access (0.3 mA shock)0.20.20.4-0.50.3-0.6-0.1
One hour access (shock baseline)0.00.00.0-0.0-0.20.20.1
Number of responses in last shaping day2.62.63.01.7-1.71.61.5
Context. condit. distance diff. score0.20.20.30.4-0.60.30.6
Locomotion velocity, session 10.70.71.40.9-0.61.20.5
Locomotion distance, session 12.53.33.6-1.81.9-1.8-1.7
Locomotion velocity, session 20.60.70.9-0.80.7-0.7-0.9
Locomotion distance, session 25.78.18.4-2.92.8-2.8-2.9
Locomotion velocity, session 30.10.10.30.30.10.5-0.1
Locomotion distance, session 30.20.20.4-0.30.6-0.6-0.4
Stereotopy head waving bouts, day 32.22.73.31.6-1.81.41.8
Stereotopy head waving duration, day 32.32.83.81.5-1.91.51.8
Locomotion velocity, session 70.10.10.2-0.30.4-0.2-0.2
Locomotion distance, session 73.34.24.7-2.22.0-2.2-1.9
Stereotopy head waving bouts, day 74.24.85.42.2-2.22.12.3
Stereotopy head waving duration, day 76.58.08.72.8-3.02.92.6
Locomotion velocity, session 80.40.50.80.7-0.80.90.4
Locomotion distance, session 82.74.04.9-2.21.9-2.2-1.7
Degree of sensitization distance3.53.54.6-2.11.7-1.8-1.9
Degree of sensitization stereotypy1.82.02.11.4-1.41.41.5
Condit. Reinf. active minus inactive responses0.10.10.2-0.40.3-0.3-0.4
Condit. Reinf. active-inactive response ratio0.20.20.4-0.5-0.0-0.3-0.6
Condit. Reinf. active responses0.70.81.1-0.91.1-0.7-0.9
Condit. Reinf. inactive responses1.01.22.3-1.01.5-0.9-0.8
Incentive salience index mean0.00.00.1-0.20.20.0-0.3
Condit. Reinf. lever presses0.10.10.2-0.30.4-0.2-0.3
Time in familiar zone, hab. session 10.10.10.1-0.20.2-0.2-0.3
Time in novel zone, hab. session 10.30.30.40.7-0.50.70.5
Total zone transitions, hab. session 12.23.13.9-1.81.7-1.6-2.0
Total locomotion distance, hab. session 11.82.52.8-1.71.6-1.6-1.5
Locomotion velocity, hab. session 12.43.43.7-1.91.9-1.9-1.7
Time in familiar zone, hab. session 20.10.10.2-0.30.3-0.40.1
Time in novel zone, hab. session 20.40.40.60.7-0.80.70.4
Total zone transitions, hab. session 26.68.59.3-3.12.8-3.0-2.9
Total locomotion distance, hab. session 26.38.39.5-3.03.0-3.1-2.5
Locomotion velocity, hab. session 26.38.59.3-3.03.1-3.0-2.5
Novel to familiar place preference ratio2.12.22.9-1.71.2-1.7-1.4
Novelty place preference1.61.72.2-1.51.0-1.4-1.2
Time in novel zone, NPP test2.02.12.6-1.61.2-1.6-1.4
Total zone transitions, NPP test4.76.87.4-2.72.7-2.5-2.5
Total locomotion distance, NPP test8.011.112.5-3.43.5-3.5-2.9
Locomotion velocity, NPP test6.89.710.8-3.23.3-3.3-2.7
Pavlov. Cond. lever latency0.50.71.0-0.90.7-1.0-0.6
Pavlov. Cond. magazine entry latency2.33.04.11.8-1.72.01.4
Pavlov. Cond. change in total contacts0.20.20.4-0.30.1-0.4-0.6
Pavlov. Cond. index score1.51.92.41.4-1.31.61.2
Pavlov. Cond. latency score2.02.53.21.7-1.51.81.4
Pavlov. Cond. lever contacts0.10.10.20.4-0.20.40.2
Pavlov. Cond. magazine entry number3.34.24.7-2.12.1-2.2-1.8
Pavlov. Cond. intertrial magazine entries2.42.83.0-1.71.6-1.7-1.7
Pavlov. Cond. lever-magazine prob. diff.1.01.31.81.2-1.11.30.9
Pavlov. Cond. response bias1.51.92.21.4-1.41.51.1
Bone: apparent density1.01.62.5-1.40.8-1.2-1.6
Bone surface0.40.61.20.5-1.11.00.4
Bone volume0.10.10.1-0.3-0.40.1-0.3
Bone: connectivity density1.52.34.0-1.51.2-1.2-2.0
Bone: cortical apparent density1.31.72.4-1.11.1-1.5-1.4
Bone: cortical area3.35.06.12.3-2.52.12.1
Bone: cortical porosity2.32.53.21.6-1.81.81.1
Bone: cortical porosity3.23.44.21.8-2.12.01.4
Bone: cortical thickness0.30.51.21.1-0.70.50.5
Bone: cortical thickness0.20.20.50.7-0.40.40.3
Bone: cortical tissue density1.41.82.5-1.21.1-1.6-1.4
Bone: elastic displacement0.91.01.3-0.90.9-1.1-1.2
Bone: elastic work0.30.40.60.8-0.80.40.5
Bone: endosteal estimation0.81.82.80.6-1.71.11.6
Bone: endosteal perimeter4.28.711.02.5-3.33.02.9
Bone: final force1.32.22.61.6-1.61.31.3
Bone: final moment1.42.42.91.7-1.71.41.3
Bone: marrow area0.91.82.90.7-1.71.21.6
Bone: maximum diameter7.614.017.33.5-4.23.73.6
Bone: maximum force1.32.33.11.6-1.81.21.5
Bone: maximum moment1.42.53.51.6-1.91.21.5
Bone: minimum diameter2.85.37.91.9-2.82.41.9
Bone: periosteal estimation2.75.67.72.0-2.82.22.5
Bone: periosteal perimeter6.610.912.73.2-3.63.33.2
Bone: post-yield work0.50.71.1-0.90.5-1.0-0.8
Bone: stiffness1.62.63.11.7-1.81.51.4
Bone: tissue strength0.70.61.3-0.80.4-1.1-0.7
Bone: trabecular number0.40.61.1-0.70.6-0.5-1.1
Bone: trabecular spacing0.40.51.20.5-0.50.41.1
Bone: trabecular thickness0.50.61.2-0.80.4-0.6-1.1
Bone: trabecular tissue density0.10.20.40.3-0.10.40.7
Breakpoint value in progressive ratio session0.20.20.6-0.1-0.3-0.40.8
Distance traveled before self-admin1.21.31.71.2-1.11.30.9
Distance traveled after self-admin1.51.62.2-1.51.1-1.4-1.1
Delta time in closed arm before/after self-admin0.30.30.40.5-0.40.50.7
Delta time in open arm before/after self-admin1.41.32.1-1.11.1-0.8-1.5
Diff in mean of infusions in LGA sessions0.60.71.50.5-0.90.31.2
Extinction: sum of active levers before priming0.00.00.00.1-0.10.00.1
Active lever presses in extinction session 60.30.20.5-0.40.5-0.70.2
Delta distance traveled before/after self-admin3.53.74.2-2.01.8-2.0-1.8
Delta ambulatory time before/after self-admin4.04.34.8-2.22.0-2.2-1.9
Time in closed arm before self-admin0.00.00.00.00.0-0.1-0.1
Time in closed arm after self-admin2.52.63.11.6-1.71.41.8
Time in open arm before self-admin0.40.40.50.7-0.50.60.7
Time in open arm after self-admin0.70.81.0-0.91.0-0.7-1.0
Sum of active levers in priming session hrs 5-60.20.20.50.3-0.70.30.5
Time to tail flick, vehicle, before self-admin0.60.71.2-0.70.9-0.4-1.1
Time to tail flick, vehicle, after self-admin1.41.51.91.4-1.20.81.4
Time to tail flick, test, before self-admin0.20.20.4-0.60.4-0.2-0.5
Time to tail flick, test, after self-admin0.90.91.30.9-0.80.91.2
Delta time to tail flick, vehicle, before/after SA0.20.20.50.3-0.5-0.10.7
Delta time to tail flick, test, before/after SA1.61.41.91.4-1.00.91.4
Ambulatory time before self-admin2.02.12.71.5-1.41.61.3
Ambulatory time after self-admin0.50.50.7-0.80.6-0.8-0.6
Total heroin consumption3.03.64.41.8-2.11.72.0
Area under the delay curve1.21.32.01.1-1.11.40.9
Delay disc. indifference point, 0s delay1.51.72.61.3-1.31.60.8
Delay disc. indifference point, 16s delay0.30.30.4-0.60.6-0.6-0.5
Delay disc. indifference point, 2s delay0.50.60.90.6-0.81.00.6
Delay disc. indifference point, 24s delay0.00.00.1-0.10.2-0.1-0.3
Delay disc. indifference point, 4s delay1.41.42.31.2-1.11.50.8
Delay disc. indifference point, 8s delay4.14.35.92.1-1.92.41.8
Delay discount exponential model param1.61.72.5-1.21.2-1.6-1.1
Delay discount hyperbolic model param1.41.52.3-1.21.2-1.5-1.0
Fecal boli incidents, locomotor time 10.40.40.8-0.80.3-0.9-0.3
Change in fecal boli incidents, locomotor task0.10.10.2-0.30.1-0.4-0.1
Time >=10cm from walls, locomotor time 10.10.10.20.1-0.20.4-0.1
Bouts of movement, locomotor time 10.00.00.00.0-0.1-0.10.1
Total resting periods, locomotor time 10.00.00.0-0.10.0-0.2-0.1
Rest time, locomotor task time 10.30.30.70.5-0.60.10.8
Distance moved, locomotor task time 10.30.30.5-0.50.7-0.1-0.7
Vertical activity count, locomotor time 11.61.72.4-1.31.5-1.0-1.3
Time >=10cm from walls, locomotor time 20.30.30.6-0.40.6-0.4-0.8
Bouts of movement, locomotor time 20.20.20.40.4-0.60.20.6
Total resting periods, locomotor time 20.20.30.40.4-0.70.20.6
Rest time, locomotor task time 20.80.91.80.6-1.20.41.3
Distance moved, locomotor task time 20.20.20.5-0.20.6-0.1-0.7
Vertical activity count, locomotor time 20.20.20.3-0.40.6-0.4-0.2
Weight adjusted by age0.00.00.10.1-0.30.00.1
Seeking ratio, delayed vs. immediate footshock0.20.20.7-0.30.3-0.1-0.9
Locomotion in novel chamber0.60.81.1-0.90.9-0.5-1.0
Locomotion in novel chamber post-restriction0.10.10.20.2-0.40.30.3
Progressive ratio0.10.10.3-0.1-0.4-0.40.5
Food seeking constrained by brief footshock0.81.01.40.9-1.10.71.2
Seeking ratio, punishment vs. effort0.30.30.70.6-0.40.80.2
Run reversals in cocaine runway, females0.10.10.40.2-0.20.20.6
Run reversals in cocaine runway, males0.10.10.20.2-0.1-0.20.5
Latency to leave start box in cocaine runway0.30.30.7-0.60.3-0.8-0.3
Latency to leave start box in cocaine runway, F0.60.60.9-0.80.9-0.9-0.6
Latency to leave start box in cocaine runway, M0.60.61.0-0.90.5-1.0-0.6
Cd content in liver0.70.81.0-0.80.8-1.0-0.9
Co content in liver0.40.50.7-0.80.6-0.9-0.6
Cu content in liver0.00.10.10.1-0.10.20.4
Fe content in liver0.10.10.20.1-0.30.40.4
K content in liver0.00.00.1-0.10.00.2-0.4
Mg content in liver1.92.02.6-1.41.2-1.3-1.6
Mn content in liver0.70.81.11.1-0.61.10.8
Na content in liver0.40.40.90.6-0.70.90.1
Rb content in liver3.13.84.0-1.92.0-2.0-2.0
Se content in liver0.40.50.8-0.70.9-0.3-0.8
Sr content in liver0.10.10.10.4-0.20.20.3
Zn content in liver1.81.92.51.4-1.61.41.2