Uqcc3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression ENSRNOG00000045561 0.05 0.03 3.2e-05 0.05 0.05 0.05 0.05 2.4e-05 2.7e-05 1.3e-05 2.2e-05
2 NAcc gene expression ENSRNOG00000045561 0.05 0.04 5.5e-05 0.05 0.04 0.04 0.04 1.2e-04 6.9e-04 7.9e-04 7.0e-04
3 OFC gene expression ENSRNOG00000045561 0.14 0.09 2.8e-03 0.06 0.04 0.02 0.04 1.4e-02 4.5e-02 1.0e-01 5.1e-02
4 PL gene expression ENSRNOG00000045561 0.06 0.04 3.6e-06 0.07 0.08 0.07 0.08 6.3e-06 1.4e-06 3.6e-06 1.4e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
BMI with tail2.27.18.32.62.72.52.9
BMI without tail1.02.22.71.71.51.31.4
Body weight3.615.417.14.13.93.83.9
Epididymis fat weight0.30.81.1-0.8-0.9-1.0-0.8
Glucose2.94.55.0-2.2-2.1-2.2-2.0
Heart weight0.71.11.5-0.9-0.7-1.2-1.2
Left kidney weight0.00.00.1-0.0-0.10.10.4
Right kidney weight0.10.20.60.1-0.00.60.8
Tail length0.92.94.12.01.71.71.4
Length with tail2.38.69.93.12.82.92.8
Length without tail1.94.24.52.12.02.02.1
Liver weight, left0.30.50.7-0.6-0.5-0.7-0.8
Liver weight, right0.00.00.00.20.1-0.0-0.0
Parametrial fat weight1.52.93.5-1.8-1.9-1.7-1.4
Retroperitoneal fat weight2.47.88.8-2.7-2.7-3.0-2.8
Intraocular pressure0.20.20.5-0.5-0.7-0.3-0.3
Extensor digitorum longus weight6.827.128.05.35.15.25.2
Soleus weight2.88.09.3-2.6-2.7-3.0-2.9
Tibialis anterior weight10.034.636.95.95.66.06.1
Tibia length1.23.36.31.31.02.12.5
Number of licking bursts0.00.00.00.1-0.1-0.2-0.1
Food consumed during 24 hour testing period0.20.20.5-0.5-0.7-0.2-0.2
Times rat made contact with spout0.20.20.50.70.60.30.1
Mean time between licks in bursts1.01.42.51.41.60.90.5
Mean num. licks in bursts0.00.00.10.00.1-0.0-0.3
Std. dev. time between licks in bursts0.10.20.40.00.3-0.3-0.6
Water consumed over 24 hours0.40.50.70.90.70.70.5
Indifference point 0 sec0.50.91.11.10.90.80.9
Indifference point AUC1.82.13.71.11.01.71.9
Indifference point function ln k2.73.86.7-1.3-1.1-2.4-2.6
Indifference point function log k2.73.86.7-1.3-1.1-2.4-2.6
Delay discounting total patch changes 0 sec0.61.01.41.21.10.80.8
Delay discounting total patch changes 12 sec6.08.09.72.72.52.93.1
Delay discounting total patch changes 18 sec0.40.50.80.60.60.70.9
Delay discounting total patch changes 24 sec7.79.610.13.13.03.13.2
Delay discounting total patch changes 6 sec1.21.81.91.41.41.21.4
Delay discounting time to switch 0 sec0.30.51.10.40.40.81.0
Delay discounting water rate 0 sec0.30.51.0-0.5-0.4-0.7-1.0
Delay discounting water rate 12 sec1.42.14.2-0.8-0.7-1.8-2.0
Delay discounting water rate 18 sec0.50.61.6-0.10.1-0.9-1.3
Delay discounting water rate 24 sec1.01.42.6-0.9-0.5-1.4-1.6
Delay discounting water rate 6 sec1.01.42.9-0.6-0.5-1.5-1.7
Locomotor activity0.60.92.2-0.3-0.3-1.2-1.5
Locomotor testing distance0.61.02.6-0.3-0.1-1.2-1.6
Locomotor testing rearing0.81.32.4-0.8-0.6-1.3-1.5
Light reinforcement 10.10.20.3-0.3-0.2-0.5-0.5
Light reinforcement 20.50.61.2-1.1-1.0-0.4-0.0
Reaction time number correct0.60.91.31.11.10.80.6
Reaction time mean minus median0.30.40.8-0.2-0.30.80.9
Reaction time mean minus median AUC0.10.10.2-0.2-0.20.50.4
Reaction time num false alarms0.20.30.8-0.00.2-0.6-0.9
Reaction time num false alarms AUC0.20.30.50.60.7-0.1-0.4
Reaction time trials correct on left0.60.91.31.11.10.80.6
Reaction time trials on left0.70.91.41.11.20.80.7
Reaction time mean0.20.20.5-0.7-0.60.10.1
Reaction time mean AUC0.30.30.8-0.9-0.8-0.1-0.1
Median of all reaction times0.10.10.1-0.4-0.20.20.3
Reaction time omissions0.00.00.10.10.20.30.2
Reaction time false alarm rate0.20.20.5-0.2-0.0-0.5-0.7
Reaction time premature initiation rate4.76.37.92.82.72.32.2
Reaction time premature initiations5.98.410.73.33.22.62.4
Std. dev. reaction times0.30.30.7-0.8-0.8-0.1-0.1
Reaction time trials completed0.70.91.41.11.20.80.7
Reaction time trials AUC0.50.81.21.01.10.70.5
Social response proportion0.10.10.10.30.40.40.3
Social responses0.10.10.20.40.50.20.0
Social time0.00.10.10.30.1-0.2-0.3
Conditioned locomotion0.60.70.70.90.80.80.8
Cocaine response after cond. corrected0.50.61.0-0.3-0.4-1.0-1.0
Cocaine response after cond. not corrected0.40.40.7-0.4-0.4-0.8-0.8
Cocaine response before conditioning0.20.30.5-0.10.20.70.7
Saline control response2.53.44.22.01.91.71.6
Condit. Reinf. active minus inactive responses0.50.71.2-0.9-1.1-0.6-0.4
Condit. Reinf. active-inactive response ratio1.31.32.6-1.4-1.6-0.8-0.4
Condit. Reinf. active responses0.00.00.0-0.0-0.20.00.0
Condit. Reinf. inactive responses0.30.40.80.80.90.30.0
Condit. Reinf. lever presses0.70.91.50.70.71.11.2
Condit. Reinf. lever reinforcers received0.00.10.10.20.00.30.4
Pavlov. Cond. lever latency0.30.50.8-0.5-0.5-0.8-0.9
Pavlov. Cond. magazine entry latency4.14.86.01.82.02.42.4
Pavlov. Cond. change in total contacts1.11.62.70.70.71.61.7
Pavlov. Cond. index score2.32.94.41.21.42.02.1
Pavlov. Cond. latency score2.02.53.91.11.21.92.0
Pavlov. Cond. lever contacts0.30.40.60.30.40.80.8
Pavlov. Cond. magazine entry number6.78.210.5-2.4-2.5-3.2-3.2
Pavlov. Cond. intertrial magazine entries1.82.32.7-1.4-1.6-1.6-1.5
Pavlov. Cond. lever-magazine prob. diff.2.63.44.81.31.52.22.2
Pavlov. Cond. response bias1.41.92.71.01.21.61.6
Conditioned reinforcement - actives2.52.53.4-1.8-1.8-1.4-1.2
Conditioned reinforcement - inactives0.91.11.6-1.3-1.3-0.8-0.6
Conditioned locomotion2.02.42.9-1.7-1.6-1.5-1.3
Intermittent access intake day 1-15 change1.81.82.5-1.5-1.6-1.2-1.0
Intermittent access intake escalation1.11.11.6-1.2-1.3-0.9-0.7
Intermittent access intake escalation 20.10.10.2-0.5-0.5-0.10.1
Intermitt. access day 1 inactive lever presses1.92.02.2-1.5-1.5-1.5-1.3
Intermitt. access day 15 inactive lever presses0.10.10.3-0.1-0.20.20.5
Intermitt. access escalation Index0.10.10.3-0.1-0.1-0.4-0.6
Intermittent access day 1 total infusions0.70.81.1-1.0-1.0-1.0-0.6
Intermittent access day 15 total infusions3.84.35.4-2.3-2.3-2.0-1.5
Intermittent access terminal intake (last 3 days)0.80.91.5-1.2-1.2-0.8-0.2
Intermittent access total infusions1.11.21.7-1.3-1.3-1.0-0.5
Intermittent access day 1 locomotion0.10.10.1-0.2-0.2-0.4-0.0
Intermittent access day 15 total locomotion0.20.20.4-0.6-0.7-0.30.0
Intermittent access total locomotion0.20.20.3-0.6-0.5-0.20.4
Intermittent access standard deviation1.81.92.4-1.5-1.5-1.3-1.1
Cocaine induced anxiety0.20.20.50.30.30.50.7
Post-drug Anxiety0.50.61.00.60.60.91.0
Baseline Anxiety1.21.21.41.21.21.11.0
Lifetime Intake1.01.11.4-1.1-1.2-1.1-0.7
Incentive Sensitization - Responses0.10.10.3-0.1-0.10.30.5
Incentive Sensitization - Breakpoint0.10.10.2-0.2-0.20.20.5
Progressive ratio test 1 active lever presses2.32.42.8-1.7-1.6-1.5-1.3
Progressive ratio test 1 breakpoint2.62.73.2-1.8-1.7-1.6-1.4
Progressive ratio test 1 inactive lever presses0.00.10.10.30.20.20.2
Progressive ratio test 2 active lever presses2.02.22.9-1.7-1.7-1.4-1.0
Progressive ratio test 2 breakpoint3.23.64.5-2.1-2.1-1.8-1.5
Progressive ratio test 2 inactive lever presses0.81.01.6-1.2-1.3-0.8-0.4
Total sessions with >9 infusions1.71.92.3-1.3-1.4-1.5-1.3
Short access day 1 total inactive lever presses0.70.70.8-0.9-0.9-0.9-0.9
Short access day 10 total inactive lever presses2.22.43.4-1.3-1.3-1.6-1.8
Short access day 1 total infusions0.91.01.2-0.9-1.0-1.1-0.9
Short access day 10 total infusions0.20.30.4-0.6-0.6-0.5-0.2
Short access total infusions0.40.40.6-0.6-0.6-0.8-0.5
Short access day 1 locomotion0.00.10.10.20.20.10.3
Short access day 10 total locomotion0.00.00.10.10.20.10.3
Short access total locomotion0.20.20.30.40.40.30.6
Compulsive drug intake1.51.52.41.51.51.10.5
One hour access (0.3 mA shock)4.24.95.5-2.3-2.3-2.3-1.9
One hour access (shock baseline)5.86.88.6-2.9-2.8-2.6-2.0
Number of responses in last shaping day0.00.00.00.10.1-0.1-0.2
Context. condit. distance diff. score0.20.30.4-0.3-0.4-0.6-0.6
Locomotion velocity, session 10.10.10.20.50.4-0.0-0.1
Locomotion distance, session 10.60.81.51.20.90.60.7
Locomotion velocity, session 22.63.03.61.91.51.61.8
Locomotion distance, session 20.20.30.80.90.60.30.4
Locomotion velocity, session 30.30.40.70.80.70.20.5
Locomotion distance, session 30.10.10.30.50.3-0.10.0
Stereotopy head waving bouts, day 30.10.10.3-0.1-0.2-0.5-0.1
Stereotopy head waving duration, day 30.10.10.3-0.0-0.2-0.6-0.3
Locomotion velocity, session 70.00.00.1-0.1-0.1-0.3-0.0
Locomotion distance, session 70.10.10.20.00.1-0.4-0.4
Stereotopy head waving bouts, day 70.10.10.30.2-0.10.30.6
Stereotopy head waving duration, day 71.92.32.91.41.21.71.7
Locomotion velocity, session 80.10.10.10.30.2-0.3-0.4
Locomotion distance, session 80.20.20.4-0.2-0.6-0.6-0.4
Degree of sensitization distance0.00.00.0-0.2-0.0-0.1-0.0
Degree of sensitization stereotypy0.80.91.50.70.41.11.2
Condit. Reinf. active minus inactive responses1.11.21.41.11.01.11.2
Condit. Reinf. active-inactive response ratio0.50.50.60.70.80.70.6
Condit. Reinf. active responses0.81.01.70.80.71.11.3
Condit. Reinf. inactive responses0.10.20.4-0.4-0.60.00.3
Incentive salience index mean1.41.61.91.31.21.31.4
Condit. Reinf. lever presses0.70.91.21.00.80.91.1
Time in familiar zone, hab. session 10.10.10.20.10.40.40.3
Time in novel zone, hab. session 11.41.41.9-0.9-0.9-1.3-1.4
Total zone transitions, hab. session 10.30.40.70.80.40.60.6
Total locomotion distance, hab. session 10.10.10.3-0.2-0.6-0.3-0.0
Locomotion velocity, hab. session 10.10.10.30.3-0.10.30.5
Time in familiar zone, hab. session 20.20.20.7-0.3-0.1-0.5-0.8
Time in novel zone, hab. session 20.40.40.80.60.50.60.9
Total zone transitions, hab. session 21.62.03.01.71.31.31.3
Total locomotion distance, hab. session 20.10.10.40.60.20.20.4
Locomotion velocity, hab. session 20.00.10.10.4-0.1-0.00.3
Novel to familiar place preference ratio1.81.92.81.21.11.51.7
Novelty place preference1.01.01.70.80.81.11.3
Time in novel zone, NPP test1.11.21.80.90.91.21.3
Total zone transitions, NPP test1.21.82.61.61.21.21.2
Total locomotion distance, NPP test0.10.10.30.50.20.00.2
Locomotion velocity, NPP test0.00.00.20.40.0-0.10.1
Pavlov. Cond. lever latency1.21.52.0-1.1-1.0-1.3-1.4
Pavlov. Cond. magazine entry latency0.91.12.10.60.81.21.4
Pavlov. Cond. change in total contacts0.30.30.8-0.1-0.00.60.9
Pavlov. Cond. index score0.50.61.10.50.60.91.1
Pavlov. Cond. latency score0.40.60.90.50.60.81.0
Pavlov. Cond. lever contacts0.20.30.40.40.40.60.7
Pavlov. Cond. magazine entry number0.50.71.3-0.3-0.5-1.0-1.1
Pavlov. Cond. intertrial magazine entries0.10.10.2-0.2-0.40.20.2
Pavlov. Cond. lever-magazine prob. diff.0.60.81.50.60.61.01.2
Pavlov. Cond. response bias0.60.71.40.50.51.01.2
Bone: apparent density0.30.50.70.40.50.90.8
Bone surface1.73.04.51.31.32.02.1
Bone volume0.71.22.10.60.71.31.4
Bone: connectivity density1.72.63.21.41.51.71.8
Bone: cortical apparent density0.50.60.80.90.80.90.7
Bone: cortical area0.71.01.60.90.81.11.3
Bone: cortical porosity0.00.00.0-0.1-0.2-0.2-0.2
Bone: cortical porosity0.00.00.10.20.30.20.1
Bone: cortical thickness3.15.15.82.42.42.22.0
Bone: cortical thickness0.60.71.31.01.10.70.5
Bone: cortical tissue density0.60.80.91.00.81.00.8
Bone: elastic displacement0.40.41.0-0.5-0.4-0.7-1.0
Bone: elastic work1.01.32.11.31.50.90.7
Bone: endosteal estimation1.12.43.2-1.8-1.7-1.5-1.1
Bone: endosteal perimeter2.04.05.6-2.3-2.4-1.9-1.3
Bone: final force2.03.24.11.71.61.92.0
Bone: final moment1.93.13.91.71.51.82.0
Bone: marrow area1.32.73.5-1.9-1.8-1.6-1.2
Bone: maximum diameter0.10.20.50.0-0.10.30.7
Bone: maximum force2.44.26.11.71.72.12.5
Bone: maximum moment2.33.95.71.71.72.12.4
Bone: minimum diameter0.61.01.6-1.3-1.2-0.9-0.5
Bone: periosteal estimation0.10.20.3-0.5-0.5-0.20.3
Bone: periosteal perimeter0.10.10.3-0.5-0.5-0.10.2
Bone: post-yield work0.40.61.2-1.1-1.0-0.30.2
Bone: stiffness0.61.01.90.70.61.11.4
Bone: tissue strength0.20.20.3-0.4-0.5-0.4-0.6
Bone: trabecular number0.71.11.60.80.91.21.3
Bone: trabecular spacing0.30.40.8-0.3-0.4-0.8-0.9
Bone: trabecular thickness0.30.30.8-0.9-0.7-0.2-0.3
Bone: trabecular tissue density4.46.27.1-2.3-2.3-2.7-2.6
Breakpoint value in progressive ratio session1.71.92.61.21.11.61.6
Distance traveled before self-admin2.12.33.21.31.31.61.8
Distance traveled after self-admin0.30.30.40.40.40.60.6
Delta time in closed arm before/after self-admin2.12.13.31.81.81.00.9
Delta time in open arm before/after self-admin1.41.32.30.80.71.31.5
Diff in mean of infusions in LGA sessions1.71.92.11.41.41.51.3
Extinction: sum of active levers before priming4.24.24.72.01.92.22.1
Active lever presses in extinction session 62.52.43.41.21.31.81.8
Delta distance traveled before/after self-admin0.50.51.0-0.5-0.5-0.7-1.0
Delta ambulatory time before/after self-admin0.90.91.7-0.7-0.7-1.0-1.3
Time in closed arm before self-admin0.10.10.3-0.5-0.50.00.1
Time in closed arm after self-admin0.50.50.8-0.5-0.5-0.8-0.9
Time in open arm before self-admin0.80.82.0-0.2-0.1-1.1-1.4
Time in open arm after self-admin0.00.10.10.30.30.10.0
Sum of active levers in priming session hrs 5-60.80.81.70.40.31.21.3
Time to tail flick, vehicle, before self-admin0.40.40.90.50.40.70.9
Time to tail flick, vehicle, after self-admin0.50.60.90.90.90.50.6
Time to tail flick, test, before self-admin0.40.40.70.90.80.40.5
Time to tail flick, test, after self-admin0.10.10.1-0.3-0.3-0.2-0.3
Delta time to tail flick, vehicle, before/after SA0.10.10.10.30.3-0.0-0.1
Delta time to tail flick, test, before/after SA0.10.10.2-0.5-0.5-0.1-0.2
Ambulatory time before self-admin1.71.83.01.00.91.61.7
Ambulatory time after self-admin0.20.20.40.20.10.60.6
Total heroin consumption3.54.24.82.11.92.22.0
Area under the delay curve0.00.00.10.30.20.00.1
Delay disc. indifference point, 0s delay0.10.20.3-0.00.1-0.6-0.5
Delay disc. indifference point, 16s delay0.10.10.20.10.10.30.4
Delay disc. indifference point, 2s delay0.20.20.2-0.5-0.4-0.5-0.3
Delay disc. indifference point, 24s delay0.20.20.40.60.60.20.1
Delay disc. indifference point, 4s delay0.40.50.90.90.80.40.4
Delay disc. indifference point, 8s delay0.30.30.6-0.1-0.2-0.7-0.7
Delay discount exponential model param0.00.00.1-0.3-0.1-0.0-0.0
Delay discount hyperbolic model param0.00.00.1-0.3-0.2-0.0-0.1
Fecal boli incidents, locomotor time 10.50.61.1-1.0-1.1-0.3-0.2
Change in fecal boli incidents, locomotor task0.50.51.1-0.1-0.2-0.9-1.0
Time >=10cm from walls, locomotor time 12.62.73.9-1.9-2.0-1.4-1.1
Bouts of movement, locomotor time 10.10.10.20.1-0.00.40.2
Total resting periods, locomotor time 10.10.10.20.0-0.10.50.4
Rest time, locomotor task time 11.61.82.1-1.3-1.4-1.3-1.3
Distance moved, locomotor task time 10.30.40.60.50.80.50.6
Vertical activity count, locomotor time 10.50.50.7-0.7-0.5-0.8-0.8
Time >=10cm from walls, locomotor time 20.20.30.6-0.8-0.6-0.2-0.1
Bouts of movement, locomotor time 21.41.51.61.11.31.21.2
Total resting periods, locomotor time 20.60.70.70.70.80.90.8
Rest time, locomotor task time 23.44.04.4-1.9-1.9-2.1-2.1
Distance moved, locomotor task time 20.50.50.70.60.70.80.7
Vertical activity count, locomotor time 20.10.10.20.30.4-0.1-0.4
Weight adjusted by age1.71.92.51.11.31.51.6
Seeking ratio, delayed vs. immediate footshock0.00.00.00.10.00.20.1
Locomotion in novel chamber2.53.14.4-2.0-2.1-1.5-1.3
Locomotion in novel chamber post-restriction2.83.33.9-1.8-1.7-2.0-1.8
Progressive ratio0.00.00.10.0-0.30.20.2
Food seeking constrained by brief footshock0.10.10.20.0-0.1-0.3-0.5
Seeking ratio, punishment vs. effort0.10.10.20.10.3-0.4-0.5
Run reversals in cocaine runway, females1.21.22.11.41.30.80.7
Run reversals in cocaine runway, males0.60.60.7-0.7-0.7-0.8-0.9
Latency to leave start box in cocaine runway0.30.30.4-0.5-0.6-0.6-0.4
Latency to leave start box in cocaine runway, F0.00.00.00.0-0.00.10.2
Latency to leave start box in cocaine runway, M3.13.03.5-1.6-1.7-1.9-1.8
Cd content in liver1.31.41.9-1.4-1.2-1.1-1.1
Co content in liver1.61.93.7-1.0-0.7-1.5-1.9
Cu content in liver0.30.40.60.80.80.50.3
Fe content in liver0.00.00.0-0.2-0.2-0.10.1
K content in liver1.01.01.40.90.71.01.2
Mg content in liver0.30.30.60.60.40.50.7
Mn content in liver2.02.32.91.41.21.71.7
Na content in liver0.50.51.00.60.50.71.0
Rb content in liver1.31.72.2-1.0-1.1-1.5-1.5
Se content in liver0.20.20.7-0.1-0.10.50.8
Sr content in liver5.75.25.82.22.22.32.4
Zn content in liver4.14.55.72.02.02.12.4