Bahcc1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability ENSRNOG00000043102 0.03 0.03 5.5e-04 0.03 0.03 0.02 0.03 4.2e-04 9.4e-05 1.6e-03 1.3e-04
2 Liver gene expression ENSRNOG00000043102 0.04 0.03 2.6e-04 0.02 0.03 0.01 0.03 9.2e-04 2.6e-04 3.2e-02 4.8e-04
3 Liver mRNA stability ENSRNOG00000043102 0.77 0.2 0.0e+00 0.55 0.55 0.55 0.55 3.8e-73 3.1e-72 1.4e-73 3.5e-73

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail0.00.00.00.10.0-0.1
BMI without tail0.10.10.20.4-0.10.4
Body weight2.39.510.13.2-2.93.2
Epididymis fat weight0.10.30.40.6-0.50.6
Glucose0.00.00.1-0.0-0.2-0.3
Heart weight0.10.20.20.5-0.40.2
Left kidney weight0.61.71.81.3-1.31.3
Right kidney weight0.10.30.40.6-0.70.4
Tail length2.16.37.22.6-2.32.7
Length with tail3.211.812.13.5-3.43.5
Length without tail1.63.64.11.9-2.01.8
Liver weight, left0.30.40.60.7-0.80.4
Liver weight, right3.35.46.92.2-2.12.6
Parametrial fat weight1.12.12.61.6-1.51.1
Retroperitoneal fat weight2.06.67.82.8-2.52.4
Intraocular pressure0.00.00.00.1-0.10.0
Extensor digitorum longus weight0.52.02.2-1.31.5-1.4
Soleus weight0.82.42.51.6-1.51.6
Tibialis anterior weight0.00.20.2-0.40.5-0.2
Tibia length10.529.732.95.7-5.65.0
Number of licking bursts0.00.00.00.1-0.00.0
Food consumed during 24 hour testing period0.20.30.60.4-0.30.7
Times rat made contact with spout3.03.43.61.8-1.81.9
Mean time between licks in bursts1.21.71.8-1.41.3-1.3
Mean num. licks in bursts0.60.80.80.8-0.90.9
Std. dev. time between licks in bursts1.11.31.6-1.11.3-1.1
Water consumed over 24 hours0.60.70.90.7-0.81.0
Indifference point 0 sec0.00.00.00.2-0.20.1
Indifference point AUC0.10.20.3-0.30.3-0.6
Indifference point function ln k0.71.01.2-1.11.1-0.8
Indifference point function log k0.71.01.2-1.11.1-0.8
Delay discounting total patch changes 0 sec0.00.00.0-0.00.1-0.1
Delay discounting total patch changes 12 sec0.00.00.10.2-0.30.0
Delay discounting total patch changes 18 sec1.21.52.1-1.11.2-1.4
Delay discounting total patch changes 24 sec0.10.10.20.4-0.40.2
Delay discounting total patch changes 6 sec0.61.01.11.0-1.00.9
Delay discounting time to switch 0 sec0.10.20.2-0.40.4-0.4
Delay discounting water rate 0 sec0.30.50.60.7-0.50.8
Delay discounting water rate 12 sec0.40.70.8-0.80.9-0.7
Delay discounting water rate 18 sec0.10.10.2-0.30.40.2
Delay discounting water rate 24 sec0.20.30.5-0.50.7-0.5
Delay discounting water rate 6 sec0.10.10.2-0.40.50.2
Locomotor activity0.30.40.6-0.70.7-0.4
Locomotor testing distance0.81.31.5-1.21.2-0.9
Locomotor testing rearing0.60.91.1-1.01.1-0.8
Light reinforcement 10.00.00.00.10.1-0.1
Light reinforcement 21.01.31.91.0-0.91.4
Reaction time number correct4.26.06.4-2.32.5-2.5
Reaction time mean minus median0.30.40.40.6-0.70.6
Reaction time mean minus median AUC0.30.30.40.6-0.60.5
Reaction time num false alarms0.20.30.4-0.50.5-0.6
Reaction time num false alarms AUC0.60.90.9-0.90.9-1.0
Reaction time trials correct on left4.26.06.4-2.32.5-2.5
Reaction time trials on left4.36.16.6-2.42.6-2.5
Reaction time mean0.00.00.00.1-0.1-0.2
Reaction time mean AUC0.10.10.3-0.10.2-0.5
Median of all reaction times0.10.10.3-0.10.2-0.5
Reaction time omissions0.00.00.0-0.10.10.1
Reaction time false alarm rate0.10.20.20.3-0.50.4
Reaction time premature initiation rate0.81.11.3-1.21.1-0.8
Reaction time premature initiations3.55.05.3-2.32.3-2.1
Std. dev. reaction times0.30.40.5-0.60.6-0.7
Reaction time trials completed4.36.16.6-2.42.6-2.5
Reaction time trials AUC4.15.96.3-2.32.5-2.5
Social response proportion0.70.80.9-0.91.0-0.7
Social responses0.10.10.2-0.50.5-0.0
Social time0.30.40.4-0.60.7-0.7
Conditioned locomotion0.60.71.01.0-0.80.6
Cocaine response after cond. corrected0.00.10.20.0-0.1-0.4
Cocaine response after cond. not corrected0.20.20.3-0.40.3-0.6
Cocaine response before conditioning0.50.60.8-0.90.9-0.3
Saline control response2.02.62.81.7-1.61.6
Condit. Reinf. active minus inactive responses0.40.50.60.7-0.60.8
Condit. Reinf. active-inactive response ratio2.42.62.71.6-1.61.6
Condit. Reinf. active responses0.00.00.1-0.20.3-0.1
Condit. Reinf. inactive responses1.41.71.7-1.31.3-1.3
Condit. Reinf. lever presses0.40.60.8-0.60.7-0.9
Condit. Reinf. lever reinforcers received0.20.30.4-0.50.6-0.6
Pavlov. Cond. lever latency0.30.40.50.5-0.60.7
Pavlov. Cond. magazine entry latency4.35.05.1-2.22.3-2.2
Pavlov. Cond. change in total contacts1.92.63.1-1.51.6-1.8
Pavlov. Cond. index score1.82.32.7-1.41.5-1.7
Pavlov. Cond. latency score1.72.22.4-1.41.5-1.5
Pavlov. Cond. lever contacts0.30.40.6-0.50.6-0.7
Pavlov. Cond. magazine entry number3.84.74.82.1-2.22.2
Pavlov. Cond. intertrial magazine entries0.91.11.31.1-1.10.9
Pavlov. Cond. lever-magazine prob. diff.2.22.83.2-1.61.7-1.8
Pavlov. Cond. response bias1.01.41.7-1.11.2-1.3
Conditioned reinforcement - actives0.00.00.0-0.20.2-0.2
Conditioned reinforcement - inactives1.51.72.21.2-1.21.5
Conditioned locomotion0.20.20.40.4-0.40.6
Intermittent access intake day 1-15 change0.50.50.60.8-0.70.5
Intermittent access intake escalation0.30.30.40.6-0.50.4
Intermittent access intake escalation 23.33.34.11.7-1.72.0
Intermitt. access day 1 inactive lever presses1.31.41.61.2-1.11.2
Intermitt. access day 15 inactive lever presses0.40.40.90.5-0.30.9
Intermitt. access escalation Index0.00.00.00.1-0.00.2
Intermittent access day 1 total infusions0.10.10.10.3-0.3-0.0
Intermittent access day 15 total infusions0.20.20.30.5-0.50.1
Intermittent access terminal intake (last 3 days)0.80.81.11.0-1.00.7
Intermittent access total infusions0.10.20.20.5-0.40.2
Intermittent access day 1 locomotion0.10.10.10.3-0.20.3
Intermittent access day 15 total locomotion0.70.70.80.9-0.90.7
Intermittent access total locomotion0.40.40.50.7-0.60.7
Intermittent access standard deviation0.30.40.50.5-0.60.7
Cocaine induced anxiety6.87.88.82.7-2.73.0
Post-drug Anxiety1.21.32.11.0-1.01.5
Baseline Anxiety6.87.27.7-2.82.7-2.6
Lifetime Intake0.00.10.10.3-0.30.1
Incentive Sensitization - Responses0.10.10.20.4-0.4-0.2
Incentive Sensitization - Breakpoint0.10.10.20.4-0.4-0.2
Progressive ratio test 1 active lever presses0.40.50.50.7-0.60.7
Progressive ratio test 1 breakpoint0.50.50.60.8-0.70.7
Progressive ratio test 1 inactive lever presses0.70.81.01.0-0.90.8
Progressive ratio test 2 active lever presses0.30.40.50.7-0.70.4
Progressive ratio test 2 breakpoint0.20.20.30.5-0.50.3
Progressive ratio test 2 inactive lever presses0.60.60.70.8-0.80.8
Total sessions with >9 infusions0.10.10.1-0.30.3-0.4
Short access day 1 total inactive lever presses0.10.10.1-0.40.4-0.2
Short access day 10 total inactive lever presses2.52.73.01.7-1.61.6
Short access day 1 total infusions0.60.70.8-0.90.8-0.7
Short access day 10 total infusions0.60.70.70.8-0.80.9
Short access total infusions0.00.00.00.0-0.0-0.1
Short access day 1 locomotion0.10.10.10.2-0.30.3
Short access day 10 total locomotion0.50.60.80.6-0.70.9
Short access total locomotion0.10.10.10.3-0.40.3
Compulsive drug intake0.00.00.00.1-0.00.0
One hour access (0.3 mA shock)0.30.30.40.6-0.60.4
One hour access (shock baseline)0.10.10.10.3-0.30.2
Number of responses in last shaping day0.80.81.00.9-0.81.0
Context. condit. distance diff. score0.60.81.2-0.91.1-0.6
Locomotion velocity, session 10.10.10.1-0.30.2-0.2
Locomotion distance, session 13.54.64.8-2.22.2-2.0
Locomotion velocity, session 21.41.62.2-1.51.3-1.0
Locomotion distance, session 21.11.51.8-1.31.3-1.0
Locomotion velocity, session 30.30.40.4-0.60.5-0.7
Locomotion distance, session 31.81.92.3-1.51.4-1.2
Stereotopy head waving bouts, day 30.00.00.0-0.10.0-0.1
Stereotopy head waving duration, day 30.00.00.1-0.20.2-0.2
Locomotion velocity, session 70.60.70.9-0.90.9-0.6
Locomotion distance, session 75.67.27.5-2.72.7-2.6
Stereotopy head waving bouts, day 70.10.10.30.2-0.20.6
Stereotopy head waving duration, day 70.81.01.70.8-0.81.3
Locomotion velocity, session 81.72.02.5-1.61.6-1.1
Locomotion distance, session 82.43.54.5-1.92.1-1.5
Degree of sensitization distance0.10.10.2-0.30.4-0.4
Degree of sensitization stereotypy0.20.20.50.3-0.20.7
Condit. Reinf. active minus inactive responses1.01.11.51.0-0.91.2
Condit. Reinf. active-inactive response ratio0.30.30.40.6-0.50.6
Condit. Reinf. active responses1.82.22.71.5-1.31.6
Condit. Reinf. inactive responses0.50.60.90.7-0.60.9
Incentive salience index mean1.01.21.81.0-0.91.4
Condit. Reinf. lever presses0.10.10.1-0.30.40.2
Time in familiar zone, hab. session 10.00.00.1-0.0-0.0-0.3
Time in novel zone, hab. session 10.00.00.0-0.10.10.1
Total zone transitions, hab. session 10.91.21.3-1.11.1-1.1
Total locomotion distance, hab. session 10.30.40.5-0.60.7-0.5
Locomotion velocity, hab. session 10.20.30.4-0.60.7-0.4
Time in familiar zone, hab. session 20.70.80.8-0.90.9-0.9
Time in novel zone, hab. session 20.00.00.00.0-0.10.0
Total zone transitions, hab. session 22.12.83.2-1.71.8-1.5
Total locomotion distance, hab. session 20.60.81.2-1.01.1-0.5
Locomotion velocity, hab. session 20.30.40.7-0.70.8-0.3
Novel to familiar place preference ratio3.43.53.71.9-1.81.9
Novelty place preference3.43.63.71.9-1.81.9
Time in novel zone, NPP test2.42.52.61.6-1.61.6
Total zone transitions, NPP test2.94.24.7-2.12.2-1.9
Total locomotion distance, NPP test1.82.43.1-1.61.8-1.2
Locomotion velocity, NPP test0.91.31.8-1.21.3-0.9
Pavlov. Cond. lever latency5.26.68.1-2.42.4-2.8
Pavlov. Cond. magazine entry latency4.76.16.12.5-2.52.4
Pavlov. Cond. change in total contacts1.71.81.91.3-1.41.4
Pavlov. Cond. index score6.17.99.02.7-2.73.0
Pavlov. Cond. latency score6.58.39.72.7-2.83.1
Pavlov. Cond. lever contacts3.03.64.71.7-1.72.2
Pavlov. Cond. magazine entry number5.26.66.9-2.62.6-2.5
Pavlov. Cond. intertrial magazine entries0.30.40.6-0.50.6-0.8
Pavlov. Cond. lever-magazine prob. diff.6.07.58.22.7-2.72.9
Pavlov. Cond. response bias5.26.36.42.5-2.52.5
Bone: apparent density0.00.00.00.00.1-0.1
Bone surface0.40.60.70.8-0.80.8
Bone volume0.10.20.20.5-0.40.5
Bone: connectivity density0.20.30.4-0.60.6-0.3
Bone: cortical apparent density1.62.12.8-1.41.3-1.7
Bone: cortical area6.19.29.63.1-3.03.0
Bone: cortical porosity4.24.65.12.2-2.31.9
Bone: cortical porosity3.63.94.32.0-2.11.8
Bone: cortical thickness6.510.811.53.4-3.33.1
Bone: cortical thickness1.51.82.21.5-1.41.1
Bone: cortical tissue density1.82.43.1-1.51.4-1.8
Bone: elastic displacement1.51.72.11.4-1.41.0
Bone: elastic work9.412.213.93.7-3.73.1
Bone: endosteal estimation0.40.80.9-0.90.9-0.9
Bone: endosteal perimeter0.71.41.61.2-1.21.3
Bone: final force4.26.97.32.7-2.62.6
Bone: final moment5.18.59.13.0-2.92.8
Bone: marrow area0.40.80.9-0.90.9-0.9
Bone: maximum diameter1.93.44.11.8-1.72.0
Bone: maximum force3.76.46.92.6-2.52.5
Bone: maximum moment4.57.88.62.9-2.82.7
Bone: minimum diameter3.36.16.72.5-2.42.6
Bone: periosteal estimation1.12.22.41.6-1.41.5
Bone: periosteal perimeter5.59.19.33.1-3.03.0
Bone: post-yield work0.40.50.5-0.70.7-0.7
Bone: stiffness0.40.60.70.8-0.70.8
Bone: tissue strength0.20.10.20.4-0.30.4
Bone: trabecular number0.00.00.00.0-0.00.1
Bone: trabecular spacing1.52.02.4-1.41.5-1.3
Bone: trabecular thickness2.12.63.01.7-1.71.4
Bone: trabecular tissue density0.50.70.7-0.80.8-0.9
Breakpoint value in progressive ratio session0.70.81.30.8-0.81.1
Distance traveled before self-admin2.32.43.41.4-1.41.8
Distance traveled after self-admin0.00.00.1-0.10.20.1
Delta time in closed arm before/after self-admin0.10.00.10.2-0.20.3
Delta time in open arm before/after self-admin0.30.30.3-0.50.6-0.5
Diff in mean of infusions in LGA sessions0.10.10.2-0.10.10.5
Extinction: sum of active levers before priming0.40.40.5-0.70.6-0.5
Active lever presses in extinction session 60.30.30.60.3-0.30.8
Delta distance traveled before/after self-admin2.12.22.7-1.41.4-1.6
Delta ambulatory time before/after self-admin2.93.23.7-1.71.7-1.9
Time in closed arm before self-admin0.00.00.00.1-0.2-0.2
Time in closed arm after self-admin0.30.30.50.6-0.70.4
Time in open arm before self-admin0.10.10.2-0.00.00.5
Time in open arm after self-admin0.40.50.6-0.70.8-0.5
Sum of active levers in priming session hrs 5-60.50.51.00.5-0.51.0
Time to tail flick, vehicle, before self-admin0.00.00.00.1-0.10.1
Time to tail flick, vehicle, after self-admin0.91.01.2-1.11.0-0.9
Time to tail flick, test, before self-admin0.30.30.40.5-0.50.6
Time to tail flick, test, after self-admin0.10.10.3-0.10.10.5
Delta time to tail flick, vehicle, before/after SA0.50.50.6-0.80.8-0.6
Delta time to tail flick, test, before/after SA0.10.10.1-0.30.2-0.2
Ambulatory time before self-admin3.23.44.71.7-1.62.2
Ambulatory time after self-admin0.00.00.10.00.10.4
Total heroin consumption0.70.91.70.7-0.71.3
Area under the delay curve1.61.72.2-1.21.1-1.5
Delay disc. indifference point, 0s delay0.00.00.1-0.10.1-0.4
Delay disc. indifference point, 16s delay4.44.54.9-2.12.1-2.2
Delay disc. indifference point, 2s delay0.00.10.1-0.30.2-0.1
Delay disc. indifference point, 24s delay1.81.71.9-1.41.2-1.4
Delay disc. indifference point, 4s delay0.20.20.4-0.40.3-0.7
Delay disc. indifference point, 8s delay0.20.20.3-0.30.2-0.5
Delay discount exponential model param1.61.72.31.2-1.11.5
Delay discount hyperbolic model param1.51.62.11.2-1.11.5
Fecal boli incidents, locomotor time 10.60.60.7-0.80.8-0.7
Change in fecal boli incidents, locomotor task0.00.00.1-0.30.1-0.2
Time >=10cm from walls, locomotor time 10.30.30.4-0.50.5-0.7
Bouts of movement, locomotor time 11.11.21.4-1.11.0-1.2
Total resting periods, locomotor time 10.80.91.1-1.00.9-1.1
Rest time, locomotor task time 10.10.10.10.3-0.40.2
Distance moved, locomotor task time 10.00.00.00.2-0.1-0.2
Vertical activity count, locomotor time 10.00.00.0-0.00.1-0.0
Time >=10cm from walls, locomotor time 20.00.00.10.2-0.2-0.1
Bouts of movement, locomotor time 21.51.61.8-1.31.2-1.4
Total resting periods, locomotor time 21.41.51.6-1.21.2-1.2
Rest time, locomotor task time 20.00.00.0-0.0-0.0-0.1
Distance moved, locomotor task time 20.00.00.10.1-0.1-0.3
Vertical activity count, locomotor time 20.20.30.3-0.50.5-0.6
Weight adjusted by age2.32.62.91.6-1.51.7
Seeking ratio, delayed vs. immediate footshock1.01.11.31.0-1.01.1
Locomotion in novel chamber0.50.70.7-0.80.8-0.8
Locomotion in novel chamber post-restriction1.41.62.01.4-1.31.1
Progressive ratio0.20.20.3-0.50.5-0.2
Food seeking constrained by brief footshock0.00.00.00.1-0.10.1
Seeking ratio, punishment vs. effort0.00.00.10.2-0.1-0.2
Run reversals in cocaine runway, females3.23.14.2-1.61.6-2.0
Run reversals in cocaine runway, males3.33.23.41.7-1.71.9
Latency to leave start box in cocaine runway0.60.70.9-0.70.7-1.0
Latency to leave start box in cocaine runway, F1.11.21.3-1.11.1-1.1
Latency to leave start box in cocaine runway, M0.10.10.10.3-0.30.0
Cd content in liver2.62.92.9-1.71.7-1.7
Co content in liver0.20.30.4-0.50.5-0.6
Cu content in liver1.92.32.41.5-1.51.5
Fe content in liver1.01.21.4-1.11.0-1.2
K content in liver0.70.70.90.8-0.71.0
Mg content in liver0.40.40.6-0.70.8-0.5
Mn content in liver0.70.81.30.7-0.71.1
Na content in liver0.20.20.30.3-0.30.5
Rb content in liver0.00.00.0-0.00.10.1
Se content in liver0.10.10.20.3-0.20.4
Sr content in liver0.80.80.90.9-1.00.8
Zn content in liver0.40.40.50.6-0.70.7