RGD1559600

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression ENSRNOG00000042232 0.28 0.11 0.0e+00 0.14 0.17 0.16 0.17 4.8e-15 1.2e-18 8.2e-18 3.7e-18
2 Liver intron excision ratio chr1:173974388:173985543 0.51 0.31 3.8e-04 0.01 0 0 0.01 1.3e-02 8.3e-02 2.4e-01 3.5e-02
3 Liver intron excision ratio chr1:173974388:173987413 0.53 0.25 2.8e-03 0.01 -0 0 0.01 3.5e-02 8.9e-01 1.3e-01 3.5e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strong Z-scores (below -2 or above 2): lower negative Z-scores are darker blue, higher positive Z-scores are darker red.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
BMI with tail2.47.88.42.72.9-2.8
BMI without tail7.816.319.03.44.3-4.4
Body weight2.29.111.52.33.3-3.4
Epididymis fat weight1.02.33.11.81.5-1.2
Glucose0.20.30.70.80.4-0.0
Heart weight0.30.41.11.10.10.4
Left kidney weight4.512.813.93.33.7-3.7
Right kidney weight4.412.414.43.13.7-3.8
Tail length2.67.910.32.13.0-3.2
Length with tail0.41.52.50.61.3-1.6
Length without tail0.81.72.5-1.6-1.21.0
Liver weight, left0.10.10.20.50.3-0.3
Liver weight, right0.10.10.3-0.00.3-0.5
Parametrial fat weight3.87.510.33.22.6-2.3
Retroperitoneal fat weight0.31.02.81.70.50.0
Intraocular pressure0.00.10.1-0.00.2-0.4
Extensor digitorum longus weight4.317.227.12.14.5-5.2
Soleus weight2.46.97.42.52.7-2.6
Tibialis anterior weight7.525.932.63.85.6-5.7
Tibia length0.00.10.20.4-0.20.4
Number of licking bursts6.17.38.4-2.3-2.92.9
Food consumed during 24 hour testing period2.32.73.01.51.7-1.7
Times rat made contact with spout1.71.93.00.71.5-1.7
Mean time between licks in bursts0.00.00.0-0.1-0.10.1
Mean num. licks in bursts8.910.713.22.63.5-3.6
Std. dev. time between licks in bursts0.10.10.30.50.10.1
Water consumed over 24 hours0.91.02.5-1.6-0.70.2
Indifference point 0 sec0.81.31.71.21.3-0.9
Indifference point AUC1.01.22.71.60.8-0.5
Indifference point function ln k0.71.01.50.41.2-1.2
Indifference point function log k0.71.01.50.41.2-1.2
Delay discounting total patch changes 0 sec1.11.82.21.51.5-1.0
Delay discounting total patch changes 12 sec0.30.30.40.70.6-0.4
Delay discounting total patch changes 18 sec0.10.10.20.40.10.2
Delay discounting total patch changes 24 sec0.70.91.51.20.9-0.7
Delay discounting total patch changes 6 sec0.50.71.61.30.00.8
Delay discounting time to switch 0 sec3.45.18.9-3.0-2.11.5
Delay discounting water rate 0 sec0.30.50.60.80.7-0.6
Delay discounting water rate 12 sec1.11.62.41.51.3-1.0
Delay discounting water rate 18 sec0.20.30.50.70.4-0.3
Delay discounting water rate 24 sec0.30.40.60.70.5-0.5
Delay discounting water rate 6 sec0.30.51.31.20.30.2
Locomotor activity0.00.00.1-0.2-0.20.2
Locomotor testing distance0.10.20.40.60.5-0.3
Locomotor testing rearing0.10.20.4-0.2-0.50.6
Light reinforcement 10.10.20.4-0.0-0.40.7
Light reinforcement 20.10.10.20.50.20.1
Reaction time number correct1.11.51.7-1.2-1.31.2
Reaction time mean minus median0.30.40.70.90.6-0.3
Reaction time mean minus median AUC0.20.30.60.80.4-0.0
Reaction time num false alarms1.11.52.1-0.6-1.31.5
Reaction time num false alarms AUC0.81.21.5-0.7-1.21.2
Reaction time trials correct on left1.11.51.7-1.2-1.31.2
Reaction time trials on left1.11.51.7-1.2-1.31.2
Reaction time mean0.30.30.80.90.4-0.3
Reaction time mean AUC0.10.10.20.50.1-0.1
Median of all reaction times0.10.20.50.70.2-0.2
Reaction time omissions0.40.50.8-0.9-0.70.5
Reaction time false alarm rate0.10.10.2-0.1-0.40.4
Reaction time premature initiation rate1.21.52.9-0.11.3-1.7
Reaction time premature initiations0.50.70.9-1.00.5-0.9
Std. dev. reaction times0.40.50.91.00.6-0.5
Reaction time trials completed1.11.51.7-1.2-1.31.2
Reaction time trials AUC0.81.21.3-1.1-1.21.0
Social response proportion0.20.20.30.4-0.20.6
Social responses0.40.51.0-0.4-0.71.0
Social time0.50.70.9-0.7-0.91.0
Conditioned locomotion0.40.41.2-1.1-0.1-0.3
Cocaine response after cond. corrected0.20.30.4-0.3-0.60.6
Cocaine response after cond. not corrected0.00.00.00.00.0-0.2
Cocaine response before conditioning1.92.33.90.61.7-2.0
Saline control response0.10.10.30.1-0.30.5
Condit. Reinf. active minus inactive responses0.50.61.81.30.20.2
Condit. Reinf. active-inactive response ratio0.70.71.00.9-0.51.0
Condit. Reinf. active responses0.30.41.01.00.4-0.2
Condit. Reinf. inactive responses1.11.32.60.11.2-1.6
Condit. Reinf. lever presses1.11.61.71.31.3-1.2
Condit. Reinf. lever reinforcers received0.10.20.50.70.10.1
Pavlov. Cond. lever latency1.01.31.4-1.2-1.21.1
Pavlov. Cond. magazine entry latency1.92.23.2-1.8-1.51.1
Pavlov. Cond. change in total contacts0.20.30.60.8-0.10.5
Pavlov. Cond. index score0.00.00.1-0.1-0.30.2
Pavlov. Cond. latency score0.00.00.0-0.1-0.20.1
Pavlov. Cond. lever contacts1.01.41.51.11.2-1.2
Pavlov. Cond. magazine entry number2.12.62.91.51.7-1.6
Pavlov. Cond. intertrial magazine entries2.63.33.61.71.9-1.8
Pavlov. Cond. lever-magazine prob. diff.0.10.20.2-0.4-0.50.4
Pavlov. Cond. response bias0.00.00.10.20.1-0.1
Conditioned reinforcement - actives1.11.01.50.91.2-1.0
Conditioned reinforcement - inactives0.10.10.20.40.30.1
Conditioned locomotion0.20.20.3-0.50.4-0.4
Intermittent access intake day 1-15 change0.20.20.2-0.3-0.40.5
Intermittent access intake escalation0.20.20.3-0.1-0.40.5
Intermittent access intake escalation 20.80.81.1-0.3-1.01.1
Intermitt. access day 1 inactive lever presses0.10.10.10.0-0.20.3
Intermitt. access day 15 inactive lever presses1.11.21.80.61.2-1.3
Intermitt. access escalation Index1.51.32.31.51.0-0.8
Intermittent access day 1 total infusions1.21.31.80.81.3-1.2
Intermittent access day 15 total infusions0.40.50.60.70.8-0.5
Intermittent access terminal intake (last 3 days)0.50.50.60.80.8-0.5
Intermittent access total infusions1.71.92.61.21.6-1.4
Intermittent access day 1 locomotion1.11.21.71.31.1-0.8
Intermittent access day 15 total locomotion0.50.51.01.00.10.8
Intermittent access total locomotion1.61.83.61.91.2-0.5
Intermittent access standard deviation0.20.20.50.70.3-0.3
Cocaine induced anxiety0.40.40.70.5-0.60.8
Post-drug Anxiety0.70.81.40.4-0.91.2
Baseline Anxiety0.30.30.50.40.6-0.7
Lifetime Intake2.62.93.81.42.0-1.8
Incentive Sensitization - Responses0.70.70.9-0.41.0-1.0
Incentive Sensitization - Breakpoint0.80.81.2-0.21.1-1.1
Progressive ratio test 1 active lever presses0.70.71.00.81.0-0.8
Progressive ratio test 1 breakpoint0.60.60.80.70.9-0.7
Progressive ratio test 1 inactive lever presses1.61.72.51.01.6-1.3
Progressive ratio test 2 active lever presses0.60.71.10.31.1-0.9
Progressive ratio test 2 breakpoint0.70.81.40.41.2-1.0
Progressive ratio test 2 inactive lever presses0.50.61.10.51.0-0.7
Total sessions with >9 infusions5.86.48.91.52.8-3.0
Short access day 1 total inactive lever presses0.10.10.30.10.5-0.4
Short access day 10 total inactive lever presses0.40.40.6-0.4-0.70.8
Short access day 1 total infusions1.31.41.90.61.4-1.4
Short access day 10 total infusions2.73.04.30.82.0-2.1
Short access total infusions3.74.15.41.52.3-2.2
Short access day 1 locomotion0.40.40.60.10.8-0.7
Short access day 10 total locomotion2.12.33.51.91.4-1.2
Short access total locomotion3.03.14.42.11.8-1.3
Compulsive drug intake0.00.00.10.30.10.1
One hour access (0.3 mA shock)2.52.94.32.11.6-1.3
One hour access (shock baseline)0.20.20.40.7-0.00.3
Number of responses in last shaping day0.20.20.5-0.00.5-0.7
Context. condit. distance diff. score0.70.91.2-0.7-1.11.0
Locomotion velocity, session 10.00.00.00.1-0.0-0.2
Locomotion distance, session 10.50.70.80.80.8-0.9
Locomotion velocity, session 20.00.00.1-0.2-0.20.1
Locomotion distance, session 21.62.43.11.21.6-1.8
Locomotion velocity, session 30.20.30.50.30.5-0.7
Locomotion distance, session 30.20.20.5-0.30.3-0.7
Stereotopy head waving bouts, day 30.40.40.7-0.5-0.60.8
Stereotopy head waving duration, day 30.20.20.4-0.2-0.40.6
Locomotion velocity, session 70.80.92.2-0.30.7-1.5
Locomotion distance, session 70.40.61.0-1.0-0.80.2
Stereotopy head waving bouts, day 70.80.91.30.61.1-1.1
Stereotopy head waving duration, day 72.73.34.11.32.0-2.0
Locomotion velocity, session 80.00.00.10.00.1-0.3
Locomotion distance, session 80.00.00.10.20.0-0.3
Degree of sensitization distance0.80.81.60.1-0.91.3
Degree of sensitization stereotypy3.03.34.71.02.1-2.2
Condit. Reinf. active minus inactive responses0.20.20.3-0.3-0.40.5
Condit. Reinf. active-inactive response ratio0.00.00.0-0.2-0.10.1
Condit. Reinf. active responses0.20.30.50.1-0.50.7
Condit. Reinf. inactive responses0.30.30.60.4-0.50.8
Incentive salience index mean0.00.00.1-0.3-0.1-0.0
Condit. Reinf. lever presses0.20.30.4-0.7-0.50.3
Time in familiar zone, hab. session 10.60.61.10.6-0.61.0
Time in novel zone, hab. session 11.41.32.4-1.00.8-1.6
Total zone transitions, hab. session 13.44.85.42.32.1-2.1
Total locomotion distance, hab. session 16.08.79.33.03.0-2.8
Locomotion velocity, hab. session 14.66.68.83.02.5-2.2
Time in familiar zone, hab. session 20.40.40.70.80.6-0.4
Time in novel zone, hab. session 20.00.00.1-0.2-0.20.2
Total zone transitions, hab. session 22.83.63.81.91.9-1.8
Total locomotion distance, hab. session 23.24.34.52.12.1-2.0
Locomotion velocity, hab. session 23.95.25.42.32.3-2.2
Novel to familiar place preference ratio0.40.40.9-0.2-0.61.0
Novelty place preference0.50.51.0-0.3-0.71.0
Time in novel zone, NPP test0.50.51.0-0.1-0.61.0
Total zone transitions, NPP test2.13.03.21.71.8-1.8
Total locomotion distance, NPP test1.82.53.21.81.6-1.4
Locomotion velocity, NPP test1.42.02.51.61.4-1.3
Pavlov. Cond. lever latency0.20.30.50.6-0.20.7
Pavlov. Cond. magazine entry latency0.91.22.30.21.1-1.5
Pavlov. Cond. change in total contacts0.60.61.3-1.2-0.0-0.7
Pavlov. Cond. index score0.30.40.8-0.60.4-0.9
Pavlov. Cond. latency score0.30.40.8-0.30.4-0.9
Pavlov. Cond. lever contacts0.40.51.0-0.60.4-1.0
Pavlov. Cond. magazine entry number0.50.61.00.7-0.41.0
Pavlov. Cond. intertrial magazine entries0.70.91.90.2-0.81.4
Pavlov. Cond. lever-magazine prob. diff.0.40.61.2-0.30.6-1.1
Pavlov. Cond. response bias0.60.81.2-1.00.4-1.1
Bone: apparent density1.01.61.81.11.3-1.3
Bone surface0.91.52.60.61.3-1.6
Bone volume1.62.73.61.31.7-1.9
Bone: connectivity density0.40.70.90.60.8-1.0
Bone: cortical apparent density0.60.81.2-0.6-1.01.1
Bone: cortical area3.75.67.01.82.6-2.6
Bone: cortical porosity0.91.01.50.51.1-1.2
Bone: cortical porosity0.20.20.40.00.5-0.7
Bone: cortical thickness1.93.13.51.61.9-1.8
Bone: cortical thickness0.40.50.80.90.7-0.5
Bone: cortical tissue density0.70.91.2-0.7-1.01.1
Bone: elastic displacement0.20.20.5-0.1-0.40.7
Bone: elastic work0.30.40.50.50.7-0.7
Bone: endosteal estimation1.43.04.51.01.8-2.1
Bone: endosteal perimeter0.81.62.90.41.3-1.7
Bone: final force6.510.612.02.83.5-3.4
Bone: final moment5.59.010.12.73.2-3.1
Bone: marrow area1.22.53.90.91.7-2.0
Bone: maximum diameter2.03.74.51.52.0-2.1
Bone: maximum force5.18.910.52.53.2-3.2
Bone: maximum moment4.27.48.52.32.9-2.9
Bone: minimum diameter2.24.06.11.12.1-2.5
Bone: periosteal estimation3.26.69.01.82.8-3.0
Bone: periosteal perimeter1.62.73.81.11.7-1.9
Bone: post-yield work2.33.13.51.51.9-1.8
Bone: stiffness4.57.18.02.32.8-2.8
Bone: tissue strength0.00.00.1-0.20.0-0.2
Bone: trabecular number0.81.21.31.01.1-1.1
Bone: trabecular spacing0.81.01.4-1.2-1.00.8
Bone: trabecular thickness2.93.56.02.41.7-1.3
Bone: trabecular tissue density0.10.10.20.50.2-0.0
Breakpoint value in progressive ratio session0.50.50.6-0.8-0.60.8
Distance traveled before self-admin0.10.10.20.20.3-0.4
Distance traveled after self-admin0.60.71.00.70.8-1.0
Delta time in closed arm before/after self-admin0.50.51.2-1.1-0.50.1
Delta time in open arm before/after self-admin3.33.15.82.41.5-1.1
Diff in mean of infusions in LGA sessions0.60.60.90.9-0.41.0
Extinction: sum of active levers before priming0.40.40.5-0.3-0.70.7
Active lever presses in extinction session 60.10.10.10.40.20.2
Delta distance traveled before/after self-admin0.80.81.20.60.9-1.1
Delta ambulatory time before/after self-admin0.70.81.20.70.9-1.1
Time in closed arm before self-admin1.11.31.41.21.2-1.0
Time in closed arm after self-admin0.40.40.8-0.3-0.70.9
Time in open arm before self-admin3.33.54.0-1.7-2.01.9
Time in open arm after self-admin0.91.01.51.20.9-0.9
Sum of active levers in priming session hrs 5-60.10.10.1-0.3-0.30.3
Time to tail flick, vehicle, before self-admin0.10.10.10.40.2-0.3
Time to tail flick, vehicle, after self-admin0.80.91.0-1.0-1.00.8
Time to tail flick, test, before self-admin0.50.50.8-0.00.8-0.9
Time to tail flick, test, after self-admin0.40.40.6-0.7-0.80.5
Delta time to tail flick, vehicle, before/after SA0.10.10.2-0.3-0.40.4
Delta time to tail flick, test, before/after SA0.10.10.2-0.0-0.40.3
Ambulatory time before self-admin0.00.00.00.10.1-0.0
Ambulatory time after self-admin0.60.61.10.50.7-1.1
Total heroin consumption0.30.40.4-0.6-0.60.7
Area under the delay curve0.10.10.1-0.2-0.40.2
Delay disc. indifference point, 0s delay0.70.81.30.50.9-1.1
Delay disc. indifference point, 16s delay3.93.95.3-1.4-2.12.3
Delay disc. indifference point, 2s delay3.53.94.91.72.0-2.2
Delay disc. indifference point, 24s delay2.52.42.7-1.4-1.61.6
Delay disc. indifference point, 4s delay0.10.10.30.50.1-0.0
Delay disc. indifference point, 8s delay0.10.10.3-0.10.3-0.5
Delay discount exponential model param0.10.20.20.30.5-0.3
Delay discount hyperbolic model param0.00.00.10.10.2-0.1
Fecal boli incidents, locomotor time 10.80.91.9-1.4-0.70.4
Change in fecal boli incidents, locomotor task0.80.71.61.30.7-0.5
Time >=10cm from walls, locomotor time 11.51.51.90.91.4-1.4
Bouts of movement, locomotor time 13.33.75.2-1.1-2.12.3
Total resting periods, locomotor time 14.14.55.5-1.7-2.32.3
Rest time, locomotor task time 12.52.74.8-2.2-1.51.0
Distance moved, locomotor task time 13.13.45.62.41.7-1.2
Vertical activity count, locomotor time 15.15.38.52.92.2-1.6
Time >=10cm from walls, locomotor time 23.73.95.81.02.2-2.4
Bouts of movement, locomotor time 20.10.10.2-0.40.1-0.4
Total resting periods, locomotor time 20.20.20.4-0.30.3-0.6
Rest time, locomotor task time 20.00.00.0-0.20.0-0.1
Distance moved, locomotor task time 20.70.80.90.91.0-0.9
Vertical activity count, locomotor time 21.11.22.11.41.0-0.6
Weight adjusted by age0.10.10.20.40.1-0.1
Seeking ratio, delayed vs. immediate footshock0.00.00.1-0.1-0.20.2
Locomotion in novel chamber0.70.91.91.40.8-0.4
Locomotion in novel chamber post-restriction1.01.22.40.5-1.01.5
Progressive ratio0.10.10.20.40.00.3
Food seeking constrained by brief footshock1.31.62.1-0.9-1.31.5
Seeking ratio, punishment vs. effort0.10.10.2-0.4-0.1-0.3
Run reversals in cocaine runway, females4.44.36.31.52.1-2.5
Run reversals in cocaine runway, males0.10.10.2-0.4-0.00.1
Latency to leave start box in cocaine runway0.10.20.40.60.10.3
Latency to leave start box in cocaine runway, F0.10.10.2-0.4-0.30.3
Latency to leave start box in cocaine runway, M0.40.41.21.10.30.2
Cd content in liver4.44.86.9-1.5-2.32.6
Co content in liver0.50.61.20.3-0.71.1
Cu content in liver0.50.71.71.30.5-0.1
Fe content in liver0.91.11.90.1-1.21.4
K content in liver0.10.10.30.50.20.0
Mg content in liver0.10.10.2-0.2-0.30.4
Mn content in liver0.20.20.4-0.10.5-0.6
Na content in liver4.14.36.91.02.2-2.6
Rb content in liver0.70.81.50.8-0.61.2
Se content in liver0.10.20.40.60.2-0.2
Sr content in liver0.50.50.60.50.8-0.7
Zn content in liver2.62.93.71.31.9-1.9